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I just downloaded and installed Rosetta 3, and was hoping to use the Holes functionality. I can't seem to find any documentation on it yet (as far as I've looked). When I looked through the files, I could locate the source files under Scoring, but was not sure if it has been included in the build process or not.

Can someone tell me how I could use the Holes functionality? TIA.

Thu, 2009-07-30 16:52

Looks like Will decided not to release that with 3.0 in February. I assume it's planned for 3.1 (which is supposed to be soon).

The low-level stuff (the scoring stuff you found) is still there, but the executeable level stuff was removed from the code before release for whatever reason. I don't know enough about the low-level bits to tell you how to use them. I can tell you that "rosettaholes" and "packstat" are the same thing.

Fri, 2009-07-31 06:32

tangentially related but is there also a flexible backbone design application planned for 3.1? There was such functionality in Rosetta++ if I remember correctly. I am currently running fixbb/relax cycles but not sure if this is the best way to do flexible backbone design.

Mon, 2009-08-03 09:11

There are multiple flexible backbone design applications under development. Nobody knows what the best way is yet, so don't feel lost in the woods. I don't think anyone is planning on releasing with 3.1. (I think cycles of design and relax may have been what was in ++ anyway, for what it's worth).

Fri, 2009-08-07 15:43