I recently installed Rosetta3.1. When I tried to run the demo for the Docking application, I received the error message:
ERROR: Option matching -dock_mcm not found in command line top-level context.
Since the documentation says that the default dock_mcm is "true", I tried running docking without the -dock_mcm flag. In that case, the the application runs but includes the warning:
Warning: Unable to detect database file Dunbrack02.lib.bin.
I am not sure if these two problems are related. Any ideas?