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Problems with building bindings.

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Problems with building bindings.

Hello, I'm having trouble running the bindings, I appear to be having some problems with the boost library. There are two copies of the boost library installed on the cluster that I work at; One for communal use and one I have installed for PyRosetta. I have followed the instructions, but the installation appears to be using files from the communal install, which is off limits. I would use these files, however, I cannot modify the preprocessor.hpp file as described. Here is my error message:

[abworth@cactus bindings]$ ./ -I/home/abworth/y/include/boost \ -I/home/abworth/y/include \ -L /home/abworth/y/lib/ -L .
-I ['/home/abworth/y/include/boost']
-L ['.']
-1 []
--BuildMiniLibs True
--gccxml gccxml
--boost_lib boost_python-xgcc40-mt-1_38
--update False
Building mini libraries...
cd /home/abworth/Softwares/Rosetta3.1/rosetta_source && ./ mode=release
scons: Reading SConscript files ...
svn: '.' is not a working copy
scons: done reading SConscript files.
scons: Building targets ...
scons: `numeric' is up to date.
scons: `utility' is up to date.
scons: `ObjexxFCL' is up to date.
scons: `core' is up to date.
scons: `protocols' is up to date.
scons: `devel' is up to date.
scons: done building targets.
cp libs...
cd /home/abworth/Softwares/Rosetta3.1/rosetta_source && cp build/src/release/linux/2.6/64/x86/gcc//lib* /home/abworth/Softwares/Rosetta3.1/rosetta_source/src/python/bindings/rosetta

buildModules(...): 'utility',
Directory: utility
Processing utility
Excluding new header: utility/FixedSizeLexicographicalIterator.hh
Excluding new header: utility/FixedSizeLexicographicalIterator.tmpl.hh
Excluding new header: utility/OrderedTuple.hh
Excluding header: utility/all.hh
Excluding header: utility/fix_boinc_read.hh
Excluding new header: utility/fixedsizearray1.hh
Excluding header: utility/random.functions.hh
Excluding header: utility/sort_predicates.hh
Excluding header: utility/vector0_bool.hh
Excluding header: utility/vectorL.hh
Excluding header: utility/vectorL_bool.hh
['utility/BitSet.hh', 'utility/BitVector.hh', 'utility/Bound.hh', 'utility/LexicographicalIterator.hh', 'utility/PeriodicSplineReader.hh', 'utility/Show.hh', 'utility/assert.hh', 'utility/basic_sys_util.hh', 'utility/down_cast.hh', 'utility/exit.hh', 'utility/heap.hh', 'utility/string_util.hh', 'utility/utility.functions.hh', 'utility/vector0.hh', 'utility/vector1.functions.hh', 'utility/vector1.hh', 'utility/vector1_bool.hh', 'utility/vectorL_Selector.hh']
Creating file...
INFO Parsing source file "utility/BitSet.hh" ...
INFO gccxml cmd: /home/abworth/y/bin/gccxml -I"." -I"../src/platform/linux" -I"../external/include" -I"../external/boost_1_38_0" "utility/BitSet.hh" -fxml="/tmp/tmpsR4lte.xml"
INFO GCCXML version - 0.9
/home/abworth/y/lib/python2.5/site-packages/pygccxml/parser/ UserWarning: unable to find out array size from expression ""
warnings.warn( msg )
Manual excluding: utility

INFO: file "" - updated( 0.000000 seconds )
Adding by bindings writen by hand...
gcc /home/abworth/Softwares/Rosetta3.1/rosetta_source/src/python/bindings/rosetta/utility/ -o /home/abworth/Softwares/Rosetta3.1/rosetta_source/src/python/bindings/rosetta/utility/_BitSet.o -c -ffloat-store -ffor-scope -fPIC -DBOOST_PYTHON_MAX_ARITY=20 -I../external/include -I/home/abworth/y/include/boost -I../src/platform/linux -I../src
In file included from /usr/include/boost/python/detail/prefix.hpp:13,
from /usr/include/boost/python/args.hpp:8,
from /usr/include/boost/python.hpp:11,
from /home/abworth/Softwares/Rosetta3.1/rosetta_source/src/python/bindings/rosetta/utility/
/usr/include/boost/python/detail/wrap_python.hpp:50:23: error: pyconfig.h: No such file or directory
/usr/include/boost/python/detail/wrap_python.hpp:74:24: error: patchlevel.h: No such file or directory

any thoughts?

Thu, 2010-02-04 17:26