Hi All,
I am trying to dock a peptide (12AA) onto a protein (structure available in PDB). However, I got the structure for the peptide using MD simulations. The issue is that the peptide ends are N-acetylated (ACE) and C-amidated (NHE). RosettaDock does not recognize these residues. Is there any way I can resolve this case.
Thanks,
Regards,
Mohan