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Predict the N-terminal of a protein

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Predict the N-terminal of a protein

I have two proteins as restraint and then predict the N-terminal of one protein which interact the other protein. Which protocol I should use?
Thanks in advance

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Mon, 2010-11-08 03:23

You can try FloppyTail protocol.

Mon, 2010-11-08 05:48

Your question is a little vague - what exactly do you have? Do you have structures of two proteins, which bind to each other through an N-terminal region of one not present in its structure?

The FloppyTail protocol is intended for sampling space of flexible tail regions, including those which bind some other partner.

Mon, 2010-11-08 06:48