I am completely new to this forum and to rosetta, so be kind with me...
I am trying to minimize a structure using rosetta and more specifically -score_app:linmin flag together with score_jd2.linuxgccrelease. First I don't have in my installation the score.linuxgccrelease executable, is that a mistake? Are score.linuxgccrelease and score_jd2.linuxgccrelease similar / identical /different?
Second I tried to run the following command, without much success :-(
>score_jd2.linuxgccrelease -database $rosettadb -s 1ubiA.pdb -score_app:linmin -out:output –out:prefix linmin_
ERROR: Option matching -score_app:linmin not found in command line top-level context
Can somebody help me to find the mistake and how to correct it?