I'm trying to run alanine scanning on a structure using the RosettaScripts program. I've used the attached xml input, gleaned from looking through the forums for alanine scanning, with the following command-line:
/bin/rosetta_scripts.linuxgccrelease -s 2K2I.pdb.clean -use_input_sc -nstruct 1 -jd2:ntrials 1 -database rosetta_database/ -ex1 -ex2 -parser:protocol ala_scan.xml -out:file:2K2I.pdb.clean.out -out:file:scorefile 2K2I.pdb.clean.sc
It seems to run just fine, but I don't get a .report output file at all. I get some ddG values in the log file, but no .report file as advertised by the RosettaScripts documentation. Am I doing something silly?