Hello:
I am trying to do protein/protein docking with rosetta. I already know that some residues involved in the binding, and I am just wondering how can I specify in the input file that some of the residues must be included for pose sampling?
thank you very much.
best
Albert
Post Situation:
Yes, you can.
See the SiteConstraint part of the docking manual, and you should be good to go.
https://www.rosettacommons.org/manuals/archive/rosetta3.5_user_guide/d0/...