After running the Plexpepdock, I have 40000 decoys. I try to use the cluter program of Rosetta 3.4 . But, I do not understand the meaning of cluster. Because , after I tried to run with 200 decoys and get the out:file with 200 file c.0.XXX.pdb format. I do not understand how cluster work.
In my case, I want to device 40000 decoys base on score, and group decoys have near score on a group. Can I use cluster program?
Thank you so much!