Can I ask how to eliminate "NUL"s when scoring PDBs? When I want to score PDB files, I have tried
1) -s /mnt/hgfs/test/name.pdb
2) -s /mnt/hgfs/test/*.pdb # for all the PDB files in the "test" folder
3) -l /mnt/hgfs/test/list.txt
These three methods all work fine if only one structure is scored. However, it always generates "NUL"s when two or more PDBs are scored. Sometimes it works fine again even for 100 files but sometimes "NUL"s come back again. I am so frustrating about it and I end up scoring the PDB one by one.
The attachment is an example for the NUL document. I would appreciate it if this can be solved.
By the way, I install Rosetta on Ubuntu, and the Ubuntu is on VMwarePlayer.
Thank you very much.