Any one knows why the Rosie Server for protein docking (docking2) automatically gave two plots that seem not consistent with each other on the x-axis which is the "RMSD". Or me please give some suggestion if I understand something wrong. Please see the attached figure.
I know from the Rosie website that the clustering of lowest energy poses like a funnel shape is a gold standard for success of identifying a potential binding pocket. But not sure why the top 20 low energy poses show up differently along the x-axis in the two plots, which kind of limits my confidence in the usage of these results...). Thanks for any comments.