Looking through the doucmentation, I found references to an application called "relax_cdrs", which enables relaxation of CDRs with constraints derived from their corresponding CDR cluster. (link to documentaiton below).
I've looked through recent weekly releases, but I can't find this binary. Can somone point me to the source file for this protocol, or some equivalent that would enable me to do the same thing? Alternatively, an explanation of how to do this in pyrosetta would be even better.