Dear all,
I submitted six jobs to Rosie (28069 through 28074) under the username dstork. They failed quickly with no error messages beyond "Failed * Tech support has been notified of this error" anywhere that I can see. After waiting a few weeks the issue hasn't been resolved. What can I do to get this job to work?
Thanks,
-Devon
Category:
Post Situation:
I looked at the first one. The PDB has at least one flaw: the TER card inserted between chains didn't get an endline character, so it looks like this:
ATOM 4278 2HA GLY A 314 -22.943 -27.890 -53.537 1.00 0.00
TERATOM 37105 CA LYS B 2 -5.906 -14.805 -49.957 1.00 0.00
ATOM 37106 C LYS B 2 -6.439 -13.943 -51.110 1.00 0.00
I guess that could be the problem, especially if that was a residue you were working with.
Thank you for your fast response, that was a good catch. I fixed the TER issue, resubmitted (28417-28422) and got the same problem. Could the issue be that between Chain A & Chain B the atom number jumps from 4278 to 37105 because this was originally a much larger file?
Thanks.
I expect not. Rosetta ignores atom numbers in all cases of which I am aware. It pays close attention to RESIDUES and their numbering, but not the atom numbers.
There don't seem to be log files for me to diagnose further. Maybe there's a missing executable or something server side. I'll bring it Sergey's attention.
Sergey showed me a log file I couldn't find that shows there's a bug in the script being run. No idea when it can be fixed.
Thank you for the information and the help.
I will pursue other ways of doing the same computation, but I still hope to run it here eventually.
Script is not fixed but only "positive" result is that app is now terminated silently. I am contacting original auhor of this app so maybe he will know what going on here...