Hi Rosetta community,
I'm running the prepack protocol using as input a PDB file containing a dimer (chain A and B). The protocol seemed to work ("... reported success in 3 seconds") but I get the following warning :
[ WARNING ] When switching to a fa_standard ResidueTypeSet: Pose already contains fa_standard ResidueTypes.
and my score_sc file contains 0.000 for the total score for every generated structure.
Here the command I used to run prepack:
$Programs/rosetta_src_2017.13.59376_bundle/main/source/bin/docking_prepack_protocol.mpi.macosclangrelease -s dimer_BW.pdb -docking:partners A_B -docking::sc_min -nstruct 4
My pdb file contains no header and all heteroatoms have been removed.
Am I doing something wrong ? I can't really see the problem.