############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2023.06+release.27ba97a [COMMIT_DATE]: 2023-02-11T03:48:06.000718 [APPLICATION]: /storage/coda1/p-rkane32/0/shared/rosetta/rosetta.source.release-340/main/source/bin/rosetta_scripts_jd3.cxx11threadmpiserialization.linuxgccrelease [MODE]: Release [EXTRAS]: cxx11thread mpi (MVAPICH2 2.3.6)serialization [OS]: GNU/Linux [COMPILER]: GCC version "10.3.0" [STDLIB]: libstdc++ version 20210408 [START_OPTIONS] -in:use_truncated_termini -in:missing_density_to_jump -in:file:job_definition_file=/storage/home/hcoda1/7/aduffy33/scratch/test/relax_jd3_2023-10-30T12.58.57.627139.xml -out:overwrite -out:mpi_tracer_to_file=logs/mpi -jd3:n_archive_nodes=1 -packing:linmem_ig=10 [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /storage/coda1/p-rkane32/0/shared/rosetta/rosetta.source.release-340/main/source/build/src/release/linux/3.10/64/x86/gcc/10.3/cxx11thread-mpi-serialization/libutility.so(backtrace_string[abi:cxx11](int)+0x43) [0x2aaabdeb8c53] /storage/coda1/p-rkane32/0/shared/rosetta/rosetta.source.release-340/main/source/build/src/release/linux/3.10/64/x86/gcc/10.3/cxx11thread-mpi-serialization/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string, std::allocator > const&)+0xce) [0x2aaabdf0770e] /storage/coda1/p-rkane32/0/shared/rosetta/rosetta.source.release-340/main/source/build/src/release/linux/3.10/64/x86/gcc/10.3/cxx11thread-mpi-serialization/libprotocols.7.so(std::__cxx11::basic_string, std::allocator > utility::tag::Tag::getOption, std::allocator > >(std::__cxx11::basic_string, std::allocator > const&) const+0x3f2) [0x2aaaaba45812] /storage/coda1/p-rkane32/0/shared/rosetta/rosetta.source.release-340/main/source/build/src/release/linux/3.10/64/x86/gcc/10.3/cxx11thread-mpi-serialization/libprotocols.1.so(protocols::jd3::pose_outputters::SilentFilePoseOutputter::filename_for_output_job[abi:cxx11](std::shared_ptr, utility::options::OptionCollection const&) const+0x15a) [0x2aaab69ce8ea] /storage/coda1/p-rkane32/0/shared/rosetta/rosetta.source.release-340/main/source/build/src/release/linux/3.10/64/x86/gcc/10.3/cxx11thread-mpi-serialization/libprotocols.1.so(protocols::jd3::pose_outputters::SilentFilePoseOutputter::outputter_for_job[abi:cxx11](std::shared_ptr, utility::options::OptionCollection const&, protocols::jd3::InnerLarvalJob const&) const+0x39) [0x2aaab69cfbc9] /storage/coda1/p-rkane32/0/shared/rosetta/rosetta.source.release-340/main/source/build/src/release/linux/3.10/64/x86/gcc/10.3/cxx11thread-mpi-serialization/libprotocols.1.so(protocols::jd3::standard::StandardJobQueen::pose_outputter_for_job(protocols::jd3::InnerLarvalJob const&, utility::options::OptionCollection const&)+0x20e) [0x2aaab6a50bbe] /storage/coda1/p-rkane32/0/shared/rosetta/rosetta.source.release-340/main/source/build/src/release/linux/3.10/64/x86/gcc/10.3/cxx11thread-mpi-serialization/libprotocols.1.so(protocols::jd3::standard::StandardJobQueen::pose_outputter_for_job(protocols::jd3::InnerLarvalJob const&)+0x2c) [0x2aaab6a5140c] /storage/coda1/p-rkane32/0/shared/rosetta/rosetta.source.release-340/main/source/build/src/release/linux/3.10/64/x86/gcc/10.3/cxx11thread-mpi-serialization/libprotocols.1.so(protocols::jd3::standard::StandardJobQueen::next_batch_of_larval_jobs_from_prelim[abi:cxx11](utility::StrongT, unsigned long)+0x6c4) [0x2aaab6a51af4] /storage/coda1/p-rkane32/0/shared/rosetta/rosetta.source.release-340/main/source/build/src/release/linux/3.10/64/x86/gcc/10.3/cxx11thread-mpi-serialization/libprotocols.1.so(protocols::jd3::standard::StandardJobQueen::determine_job_list[abi:cxx11](utility::StrongT, unsigned long)+0x12e) [0x2aaab6a52abe] /storage/coda1/p-rkane32/0/shared/rosetta/rosetta.source.release-340/main/source/build/src/release/linux/3.10/64/x86/gcc/10.3/cxx11thread-mpi-serialization/libprotocols.1.so(protocols::jd3::JobQueen::determine_job_list_and_track[abi:cxx11](utility::StrongT, unsigned long)+0x10) [0x2aaab68302a0] /storage/coda1/p-rkane32/0/shared/rosetta/rosetta.source.release-340/main/source/build/src/release/linux/3.10/64/x86/gcc/10.3/cxx11thread-mpi-serialization/libprotocols.1.so(protocols::jd3::job_distributors::JobExtractor::query_job_queen_for_more_jobs_for_current_node()+0x63) [0x2aaab68a0d63] /storage/coda1/p-rkane32/0/shared/rosetta/rosetta.source.release-340/main/source/build/src/release/linux/3.10/64/x86/gcc/10.3/cxx11thread-mpi-serialization/libprotocols.1.so(protocols::jd3::job_distributors::JobExtractor::find_jobs_for_next_node()+0xeb) [0x2aaab68a209b] /storage/coda1/p-rkane32/0/shared/rosetta/rosetta.source.release-340/main/source/build/src/release/linux/3.10/64/x86/gcc/10.3/cxx11thread-mpi-serialization/libprotocols.1.so(protocols::jd3::job_distributors::JobExtractor::get_initial_job_dag_and_queue()+0x9e) [0x2aaab68a285e] /storage/coda1/p-rkane32/0/shared/rosetta/rosetta.source.release-340/main/source/build/src/release/linux/3.10/64/x86/gcc/10.3/cxx11thread-mpi-serialization/libprotocols.1.so(protocols::jd3::job_distributors::MPIWorkPoolJobDistributor::master_setup()+0x25) [0x2aaab68ae0b5] /storage/coda1/p-rkane32/0/shared/rosetta/rosetta.source.release-340/main/source/build/src/release/linux/3.10/64/x86/gcc/10.3/cxx11thread-mpi-serialization/libprotocols.1.so(protocols::jd3::job_distributors::MPIWorkPoolJobDistributor::go_master()+0x17) [0x2aaab68c7917] /storage/coda1/p-rkane32/0/shared/rosetta/rosetta.source.release-340/main/source/build/src/release/linux/3.10/64/x86/gcc/10.3/cxx11thread-mpi-serialization/libprotocols.1.so(protocols::jd3::job_distributors::MPIWorkPoolJobDistributor::go(std::shared_ptr)+0x9c) [0x2aaab68c7f2c] /storage/coda1/p-rkane32/0/shared/rosetta/rosetta.source.release-340/main/source/bin/rosetta_scripts_jd3.cxx11threadmpiserialization.linuxgccrelease() [0x402ac4] /lib64/libc.so.6(__libc_start_main+0xf5) [0x2aaac24a4555] /storage/coda1/p-rkane32/0/shared/rosetta/rosetta.source.release-340/main/source/bin/rosetta_scripts_jd3.cxx11threadmpiserialization.linuxgccrelease() [0x402c60] [END_BACKTRACE] [FILE]: src/utility/tag/Tag.hh [LINE]: 182 [START_MESSAGE] Option filename not found. [END_MESSAGE] [END_CRASH_REPORT]