-in -file -s 'target.pdb eza_H.pdb' -extra_res_fa eza.params -extra_patch_fa eza_patches.txt -coupled_moves -backbone_mover backrub -ligand_mode true -pH -pH_mode true -keep_input_protonation_state true -chemical -set_atomic_charge fa_standard:EZL:N1:-1 -set_atomic_charge fa_standard:ZN:ZN:+1 -exclude_nonclashing_positions true -packing -ex1 -ex1aro -ex2 -extrachi_cutoff 0 -no_optH false -flip_HNQ true -parser -protocol Dock_coupledmoves.xml #-qsar # -max_grid_cache_size 1 -analytic_etable_evaluation true