##############################################################################################################
#
# Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/
# or use the script Rosetta/main/source/scripts/python/public/report_crashes.py
#

[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2021.16+release.8ee4f02
[COMMIT_DATE]: 2021-04-20T20:57:38.289184
[APPLICATION]: /truba/home/aniyaz/softs/rosetta/main/source/bin/mp_domain_assembly.mpi.linuxgccrelease
[MODE]: Release
[EXTRAS]: mpi (OpenMPI 4.1.1) 
[OS]: GNU/Linux
[COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-44)"
[STDLIB]: libstdc++ version 20150623
[START_OPTIONS]
 -in:ignore_unrecognized_res -in:auto_setup_metals -in:path:database=/truba/home/aniyaz/softs/rosetta/main/database/ -in:file:extra_res_fa=./CA.params ./ZN.params -in:file:frag3=./aat000_03_05.200_v1_3 -in:file:frag9=./aat000_09_05.200_v1_3 -in:file:fasta=./O14672_NtoQ_AtoG_ZZ.fasta -out:nstruct=1 -out:file:silent=silent.out -mp:assembly:TM_pose_number=3 -mp:assembly:poses=./experimental_zn.pdb ./extracellular.pdb ./transmembrane.pdb ./intracellular.pdb -relax:range:angle_max=0.5

[END_OPTIONS]

[START_BACKTRACE]: RAW_LIBC
/truba/home/aniyaz/softs/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(backtrace_string(int)+0x3a) [0x2b68508409fa]
/truba/home/aniyaz/softs/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::excn::Exception::Exception(char const*, int, std::string const&)+0x51) [0x2b685083ff81]
/truba/home/aniyaz/softs/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::exit(char const*, int, std::string const&, int)+0xa5) [0x2b68508e2f05]
/truba/home/aniyaz/softs/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libcore.2.so(core::chemical::ResidueTypeSetCache::add_residue_type(std::shared_ptr<core::chemical::ResidueType const>)+0x31d) [0x2b684f2ddf2d]
/truba/home/aniyaz/softs/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libcore.2.so(core::chemical::ResidueTypeSet::add_base_residue_type(std::shared_ptr<core::chemical::MutableResidueType>)+0x141) [0x2b684f2d5ff1]
/truba/home/aniyaz/softs/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libcore.2.so(core::chemical::GlobalResidueTypeSet::init_restypes_from_commandline()+0x345) [0x2b684f1a58a5]
/truba/home/aniyaz/softs/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libcore.2.so(core::chemical::GlobalResidueTypeSet::GlobalResidueTypeSet(std::string const&, std::string const&)+0x1a1) [0x2b684f1a7371]
/truba/home/aniyaz/softs/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libcore.2.so(core::chemical::ChemicalManager::create_residue_type_set(std::string const&) const+0x126) [0x2b684f173006]
/truba/home/aniyaz/softs/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libcore.2.so(std::_Function_handler<std::shared_ptr<core::chemical::GlobalResidueTypeSet> (), std::_Bind<std::_Mem_fn<std::shared_ptr<core::chemical::GlobalResidueTypeSet> (core::chemical::ChemicalManager::*)(std::string const&) const> (core::chemical::ChemicalManager*, std::reference_wrapper<std::string const>)> >::_M_invoke(std::_Any_data const&)+0x27) [0x2b684f173c77]
/truba/home/aniyaz/softs/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libcore.2.so(core::chemical::ChemicalManager::residue_type_set(std::string const&)+0x172) [0x2b684f171122]
/truba/home/aniyaz/softs/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libcore.6.so(core::import_pose::poses_from_files(utility::vector1<std::string, std::allocator<std::string> > const&, bool, core::import_pose::FileType)+0x40) [0x2b684b311910]
/truba/home/aniyaz/softs/rosetta/main/source/bin/mp_domain_assembly.mpi.linuxgccrelease() [0x40f2ba]
/truba/home/aniyaz/softs/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols.1.so(protocols::jd2::JobDistributor::run_one_job(std::shared_ptr<protocols::moves::Mover>&, long, std::string&, std::string&, unsigned long&, unsigned long&, bool)+0xc52) [0x2b684ace0d02]
/truba/home/aniyaz/softs/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols.1.so(protocols::jd2::JobDistributor::go_main(std::shared_ptr<protocols::moves::Mover>)+0xc1) [0x2b684ace2a21]
/truba/home/aniyaz/softs/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols.1.so(protocols::jd2::MPIFileBufJobDistributor::go(std::shared_ptr<protocols::moves::Mover>)+0xd6) [0x2b684ad017c6]
/truba/home/aniyaz/softs/rosetta/main/source/bin/mp_domain_assembly.mpi.linuxgccrelease() [0x40cb8d]
/lib64/libc.so.6(__libc_start_main+0xf5) [0x2b6853aca555]
/truba/home/aniyaz/softs/rosetta/main/source/bin/mp_domain_assembly.mpi.linuxgccrelease() [0x40cc76]

[END_BACKTRACE]

[FILE]: src/core/chemical/ResidueTypeSetCache.cc
[LINE]: 106
[START_MESSAGE]
[ ERROR ] UtilityExitException
ERROR: Error in core::chemical::ResidueTypeSetCache::add_residue_type(): Attempting to add a new residue type, but residue type 'CA' already exists in the cache.  (Did you load a .params file with the -extra_res_fa commandline option that was already listed in residue_types.txt, perhaps?)



[END_MESSAGE]
[END_CRASH_REPORT]