############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/0/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/9/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/13/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/5/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/24/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/25/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/21/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/28/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/20/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/8/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/17/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/11/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/3/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/30/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/22/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/23/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/1/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/10/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/26/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/6/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/15/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/18/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/12/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/2/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/16/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/14/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/31/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/4/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/27/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/29/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/7/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/19/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/33/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/35/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/39/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/36/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/37/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/32/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/43/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/45/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/34/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/38/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/44/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/40/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/47/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/49/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/41/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/42/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/46/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.01+master.1785269 [COMMIT_DATE]: 2019-12-29T14:09:34 [APPLICATION]: condor_exec.exe [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-4)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -denovo:use_legacy_job_distributor -in:ignore_unrecognized_res -in:file:fasta=/home/rosie/rosie/rosie.back/Jobs/96904/input/target_fasta -out:nstruct=1 -out:file:silent=/home/rosie/rosie/rosie.back/Jobs/96904/output/FARFAR2/48/farna_rebuild.out -run:ignore_zero_occupancy=false -score:weights=stepwise/rna/rna_res_level_energy4.wts -score:loop_close:allow_complex_loop_graph -corrections:restore_talaris_behavior -rna:denovo:temperature=2 -rna:denovo:minimize_rna -rna:denovo:secstruct_file=/home/rosie/rosie/rosie.back/Jobs/96904/input/secstruct -rna:denovo:symm_hack_arity=1 -rna:denovo:staged_constraints=false -rna:denovo:fuzz_fragments=0 -rna:denovo:bps_moves [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC [0x3c3056f] [0x6172993] [0x6218f56] [0x4876414] [0x3be60af] [0x3bf1ebb] [0x638dae] [0x6390b7] [0x412dbc] [0x6713f54] [0x63827d] [END_BACKTRACE] [FILE]: src/core/pose/rna/RNA_SecStruct.cc [LINE]: 286 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Not complementary at positions A 8 and U 13 [END_MESSAGE] [END_CRASH_REPORT]