############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2021.16+release.8ee4f02 [COMMIT_DATE]: 2021-04-20T20:57:38.289184 [APPLICATION]: AbinitioRelax.mpi.linuxgccrelease [MODE]: Release [EXTRAS]: mpi (OpenMPI 4.1.4) [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-11)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -in -in:file -in:file:native=2LZMA.pdb -in:file:frag3=aa2LZMA03_05.200_v1_3 -in:file:frag9=aa2LZMA09_05.200_v1_3 -in:file:fasta=2LZMA.fasta -out -out:overwrite -out:nstruct=1 -out:file -out:file:scorefile=2LZM_broker.sc -out:file:silent=2LZM_broker.out -out:file:silent_struct_type=binary -run -run:protocol=broker -run:reinitialize_mover_for_each_job -score -score:find_neighbors_3dgrid -evaluation -evaluation:rmsd=NATIVE _core 2LZMA_core.txt -abinitio -abinitio:relax -abinitio:increase_cycles=10 -abinitio:rg_reweight=0.5 -abinitio:rsd_wt_helix=0.5 -abinitio:rsd_wt_loop=0.5 -broker -broker:setup=topology_broker.tpb -relax -relax:fast [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::save_crash_report(char const*, std::string const&, int)+0x25) [0x2aef8b2838b5] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::signal_handler(int)+0xaa) [0x2aef8b2839ea] /lib64/libc.so.6(+0x36400) [0x2aef8e487400] /lib64/libstdc++.so.6(std::string::assign(std::string const&)+0x19) [0x2aef8dad4d39] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols.1.so(protocols::jobdist::BaseJobDistributor::next_job(std::shared_ptr&, int&)+0x19b) [0x2aef854179db] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::fold(core::pose::Pose&, std::shared_ptr)+0x65c) [0x2aef7ec1d13c] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::run()+0xd3) [0x2aef7ec1feb3] AbinitioRelax.mpi.linuxgccrelease() [0x402dea] /lib64/libc.so.6(__libc_start_main+0xf5) [0x2aef8e473555] AbinitioRelax.mpi.linuxgccrelease() [0x403007] [END_BACKTRACE] [FILE]: SIGSEGV [LINE]: 11 [START_MESSAGE] Segmentation Fault [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2021.16+release.8ee4f02 [COMMIT_DATE]: 2021-04-20T20:57:38.289184 [APPLICATION]: AbinitioRelax.mpi.linuxgccrelease [MODE]: Release [EXTRAS]: mpi (OpenMPI 4.1.4) [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-11)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -in -in:file -in:file:native=2LZMA.pdb -in:file:frag3=aa2LZMA03_05.200_v1_3 -in:file:frag9=aa2LZMA09_05.200_v1_3 -in:file:fasta=2LZMA.fasta -out -out:overwrite -out:nstruct=1 -out:file -out:file:scorefile=2LZM_broker.sc -out:file:silent=2LZM_broker.out -out:file:silent_struct_type=binary -run -run:protocol=broker -run:reinitialize_mover_for_each_job -score -score:find_neighbors_3dgrid -evaluation -evaluation:rmsd=NATIVE _core 2LZMA_core.txt -abinitio -abinitio:relax -abinitio:increase_cycles=10 -abinitio:rg_reweight=0.5 -abinitio:rsd_wt_helix=0.5 -abinitio:rsd_wt_loop=0.5 -broker -broker:setup=topology_broker.tpb -relax -relax:fast [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::save_crash_report(char const*, std::string const&, int)+0x25) [0x2b13040ac8b5] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::signal_handler(int)+0xaa) [0x2b13040ac9ea] /lib64/libc.so.6(+0x36400) [0x2b13072b0400] /lib64/libstdc++.so.6(std::string::assign(std::string const&)+0x19) [0x2b13068fdd39] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols.1.so(protocols::jobdist::BaseJobDistributor::next_job(std::shared_ptr&, int&)+0x19b) [0x2b12fe2409db] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::fold(core::pose::Pose&, std::shared_ptr)+0x65c) [0x2b12f7a4613c] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::run()+0xd3) [0x2b12f7a48eb3] AbinitioRelax.mpi.linuxgccrelease() [0x402dea] /lib64/libc.so.6(__libc_start_main+0xf5) [0x2b130729c555] AbinitioRelax.mpi.linuxgccrelease() [0x403007] [END_BACKTRACE] [FILE]: SIGSEGV [LINE]: 11 [START_MESSAGE] Segmentation Fault [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2021.16+release.8ee4f02 [COMMIT_DATE]: 2021-04-20T20:57:38.289184 [APPLICATION]: AbinitioRelax.mpi.linuxgccrelease [MODE]: Release [EXTRAS]: mpi (OpenMPI 4.1.4) [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-11)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -in -in:file -in:file:native=2LZMA.pdb -in:file:frag3=aa2LZMA03_05.200_v1_3 -in:file:frag9=aa2LZMA09_05.200_v1_3 -in:file:fasta=2LZMA.fasta -out -out:overwrite -out:nstruct=1 -out:file -out:file:scorefile=2LZM_broker.sc -out:file:silent=2LZM_broker.out -out:file:silent_struct_type=binary -run -run:protocol=broker -run:reinitialize_mover_for_each_job -score -score:find_neighbors_3dgrid -evaluation -evaluation:rmsd=NATIVE _core 2LZMA_core.txt -abinitio -abinitio:relax -abinitio:increase_cycles=10 -abinitio:rg_reweight=0.5 -abinitio:rsd_wt_helix=0.5 -abinitio:rsd_wt_loop=0.5 -broker -broker:setup=topology_broker.tpb -relax -relax:fast [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::save_crash_report(char const*, std::string const&, int)+0x25) [0x2b0a7ed018b5] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::signal_handler(int)+0xaa) [0x2b0a7ed019ea] /lib64/libc.so.6(+0x36400) [0x2b0a81f05400] /lib64/libstdc++.so.6(std::string::assign(std::string const&)+0x19) [0x2b0a81552d39] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols.1.so(protocols::jobdist::BaseJobDistributor::next_job(std::shared_ptr&, int&)+0x19b) [0x2b0a78e959db] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::fold(core::pose::Pose&, std::shared_ptr)+0x65c) [0x2b0a7269b13c] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::run()+0xd3) [0x2b0a7269deb3] AbinitioRelax.mpi.linuxgccrelease() [0x402dea] /lib64/libc.so.6(__libc_start_main+0xf5) [0x2b0a81ef1555] AbinitioRelax.mpi.linuxgccrelease() [0x403007] [END_BACKTRACE] [FILE]: SIGSEGV [LINE]: 11 [START_MESSAGE] Segmentation Fault [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2021.16+release.8ee4f02 [COMMIT_DATE]: 2021-04-20T20:57:38.289184 [APPLICATION]: AbinitioRelax.mpi.linuxgccrelease [MODE]: Release [EXTRAS]: mpi (OpenMPI 4.1.4) [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-11)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -in -in:file -in:file:native=2LZMA.pdb -in:file:frag3=aa2LZMA03_05.200_v1_3 -in:file:frag9=aa2LZMA09_05.200_v1_3 -in:file:fasta=2LZMA.fasta -out -out:overwrite -out:nstruct=1 -out:file -out:file:scorefile=2LZM_broker.sc -out:file:silent=2LZM_broker.out -out:file:silent_struct_type=binary -run -run:protocol=broker -run:reinitialize_mover_for_each_job -score -score:find_neighbors_3dgrid -evaluation -evaluation:rmsd=NATIVE _core 2LZMA_core.txt -abinitio -abinitio:relax -abinitio:increase_cycles=10 -abinitio:rg_reweight=0.5 -abinitio:rsd_wt_helix=0.5 -abinitio:rsd_wt_loop=0.5 -broker -broker:setup=topology_broker.tpb -relax -relax:fast [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::save_crash_report(char const*, std::string const&, int)+0x25) [0x2b3bf0f2d8b5] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::signal_handler(int)+0xaa) [0x2b3bf0f2d9ea] /lib64/libc.so.6(+0x36400) [0x2b3bf4131400] /lib64/libstdc++.so.6(std::string::assign(std::string const&)+0x19) [0x2b3bf377ed39] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols.1.so(protocols::jobdist::BaseJobDistributor::next_job(std::shared_ptr&, int&)+0x19b) [0x2b3beb0c19db] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::fold(core::pose::Pose&, std::shared_ptr)+0x65c) [0x2b3be48c713c] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::run()+0xd3) [0x2b3be48c9eb3] AbinitioRelax.mpi.linuxgccrelease() [0x402dea] /lib64/libc.so.6(__libc_start_main+0xf5) [0x2b3bf411d555] AbinitioRelax.mpi.linuxgccrelease() [0x403007] [END_BACKTRACE] [FILE]: SIGSEGV [LINE]: 11 [START_MESSAGE] Segmentation Fault [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2021.16+release.8ee4f02 [COMMIT_DATE]: 2021-04-20T20:57:38.289184 [APPLICATION]: AbinitioRelax.mpi.linuxgccrelease [MODE]: Release [EXTRAS]: mpi (OpenMPI 4.1.4) [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-11)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -in -in:file -in:file:native=2LZMA.pdb -in:file:frag3=aa2LZMA03_05.200_v1_3 -in:file:frag9=aa2LZMA09_05.200_v1_3 -in:file:fasta=2LZMA.fasta -out -out:overwrite -out:nstruct=1 -out:file -out:file:scorefile=2LZM_broker.sc -out:file:silent=2LZM_broker.out -out:file:silent_struct_type=binary -run -run:protocol=broker -run:reinitialize_mover_for_each_job -score -score:find_neighbors_3dgrid -evaluation -evaluation:rmsd=NATIVE _core 2LZMA_core.txt -abinitio -abinitio:relax -abinitio:increase_cycles=10 -abinitio:rg_reweight=0.5 -abinitio:rsd_wt_helix=0.5 -abinitio:rsd_wt_loop=0.5 -broker -broker:setup=topology_broker.tpb -relax -relax:fast [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::save_crash_report(char const*, std::string const&, int)+0x25) [0x2b1c1a1f88b5] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::signal_handler(int)+0xaa) [0x2b1c1a1f89ea] /lib64/libc.so.6(+0x36400) [0x2b1c1d3fc400] /lib64/libstdc++.so.6(std::string::assign(std::string const&)+0x19) [0x2b1c1ca49d39] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols.1.so(protocols::jobdist::BaseJobDistributor::next_job(std::shared_ptr&, int&)+0x19b) [0x2b1c1438c9db] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::fold(core::pose::Pose&, std::shared_ptr)+0x65c) [0x2b1c0db9213c] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::run()+0xd3) [0x2b1c0db94eb3] AbinitioRelax.mpi.linuxgccrelease() [0x402dea] /lib64/libc.so.6(__libc_start_main+0xf5) [0x2b1c1d3e8555] AbinitioRelax.mpi.linuxgccrelease() [0x403007] [END_BACKTRACE] [FILE]: SIGSEGV [LINE]: 11 [START_MESSAGE] Segmentation Fault [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2021.16+release.8ee4f02 [COMMIT_DATE]: 2021-04-20T20:57:38.289184 [APPLICATION]: AbinitioRelax.mpi.linuxgccrelease [MODE]: Release [EXTRAS]: mpi (OpenMPI 4.1.4) [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-11)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -in -in:file -in:file:native=2LZMA.pdb -in:file:frag3=aa2LZMA03_05.200_v1_3 -in:file:frag9=aa2LZMA09_05.200_v1_3 -in:file:fasta=2LZMA.fasta -out -out:overwrite -out:nstruct=1 -out:file -out:file:scorefile=2LZM_broker.sc -out:file:silent=2LZM_broker.out -out:file:silent_struct_type=binary -run -run:protocol=broker -run:reinitialize_mover_for_each_job -score -score:find_neighbors_3dgrid -evaluation -evaluation:rmsd=NATIVE _core 2LZMA_core.txt -abinitio -abinitio:relax -abinitio:increase_cycles=10 -abinitio:rg_reweight=0.5 -abinitio:rsd_wt_helix=0.5 -abinitio:rsd_wt_loop=0.5 -broker -broker:setup=topology_broker.tpb -relax -relax:fast [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::save_crash_report(char const*, std::string const&, int)+0x25) [0x2b57c62468b5] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::signal_handler(int)+0xaa) [0x2b57c62469ea] /lib64/libc.so.6(+0x36400) [0x2b57c944a400] /lib64/libstdc++.so.6(std::string::assign(std::string const&)+0x19) [0x2b57c8a97d39] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols.1.so(protocols::jobdist::BaseJobDistributor::next_job(std::shared_ptr&, int&)+0x19b) [0x2b57c03da9db] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::fold(core::pose::Pose&, std::shared_ptr)+0x65c) [0x2b57b9be013c] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::run()+0xd3) [0x2b57b9be2eb3] AbinitioRelax.mpi.linuxgccrelease() [0x402dea] /lib64/libc.so.6(__libc_start_main+0xf5) [0x2b57c9436555] AbinitioRelax.mpi.linuxgccrelease() [0x403007] [END_BACKTRACE] [FILE]: SIGSEGV [LINE]: 11 [START_MESSAGE] Segmentation Fault [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2021.16+release.8ee4f02 [COMMIT_DATE]: 2021-04-20T20:57:38.289184 [APPLICATION]: AbinitioRelax.mpi.linuxgccrelease [MODE]: Release [EXTRAS]: mpi (OpenMPI 4.1.4) [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-11)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -in -in:file -in:file:native=2LZMA.pdb -in:file:frag3=aa2LZMA03_05.200_v1_3 -in:file:frag9=aa2LZMA09_05.200_v1_3 -in:file:fasta=2LZMA.fasta -out -out:overwrite -out:nstruct=1 -out:file -out:file:scorefile=2LZM_broker.sc -out:file:silent=2LZM_broker.out -out:file:silent_struct_type=binary -run -run:protocol=broker -run:reinitialize_mover_for_each_job -score -score:find_neighbors_3dgrid -evaluation -evaluation:rmsd=NATIVE _core 2LZMA_core.txt -abinitio -abinitio:relax -abinitio:increase_cycles=10 -abinitio:rg_reweight=0.5 -abinitio:rsd_wt_helix=0.5 -abinitio:rsd_wt_loop=0.5 -broker -broker:setup=topology_broker.tpb -relax -relax:fast [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::save_crash_report(char const*, std::string const&, int)+0x25) [0x2b40d65168b5] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::signal_handler(int)+0xaa) [0x2b40d65169ea] /lib64/libc.so.6(+0x36400) [0x2b40d971a400] /lib64/libstdc++.so.6(std::string::assign(std::string const&)+0x19) [0x2b40d8d67d39] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols.1.so(protocols::jobdist::BaseJobDistributor::next_job(std::shared_ptr&, int&)+0x19b) [0x2b40d06aa9db] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::fold(core::pose::Pose&, std::shared_ptr)+0x65c) [0x2b40c9eb013c] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::run()+0xd3) [0x2b40c9eb2eb3] AbinitioRelax.mpi.linuxgccrelease() [0x402dea] /lib64/libc.so.6(__libc_start_main+0xf5) [0x2b40d9706555] AbinitioRelax.mpi.linuxgccrelease() [0x403007] [END_BACKTRACE] [FILE]: SIGSEGV [LINE]: 11 [START_MESSAGE] Segmentation Fault [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2021.16+release.8ee4f02 [COMMIT_DATE]: 2021-04-20T20:57:38.289184 [APPLICATION]: AbinitioRelax.mpi.linuxgccrelease [MODE]: Release [EXTRAS]: mpi (OpenMPI 4.1.4) [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-11)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -in -in:file -in:file:native=2LZMA.pdb -in:file:frag3=aa2LZMA03_05.200_v1_3 -in:file:frag9=aa2LZMA09_05.200_v1_3 -in:file:fasta=2LZMA.fasta -out -out:overwrite -out:nstruct=1 -out:file -out:file:scorefile=2LZM_broker.sc -out:file:silent=2LZM_broker.out -out:file:silent_struct_type=binary -run -run:protocol=broker -run:reinitialize_mover_for_each_job -score -score:find_neighbors_3dgrid -evaluation -evaluation:rmsd=NATIVE _core 2LZMA_core.txt -abinitio -abinitio:relax -abinitio:increase_cycles=10 -abinitio:rg_reweight=0.5 -abinitio:rsd_wt_helix=0.5 -abinitio:rsd_wt_loop=0.5 -broker -broker:setup=topology_broker.tpb -relax -relax:fast [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::save_crash_report(char const*, std::string const&, int)+0x25) [0x2b6ec40dc8b5] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::signal_handler(int)+0xaa) [0x2b6ec40dc9ea] /lib64/libc.so.6(+0x36400) [0x2b6ec72e0400] /lib64/libstdc++.so.6(std::string::assign(std::string const&)+0x19) [0x2b6ec692dd39] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols.1.so(protocols::jobdist::BaseJobDistributor::next_job(std::shared_ptr&, int&)+0x19b) [0x2b6ebe2709db] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::fold(core::pose::Pose&, std::shared_ptr)+0x65c) [0x2b6eb7a7613c] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::run()+0xd3) [0x2b6eb7a78eb3] AbinitioRelax.mpi.linuxgccrelease() [0x402dea] /lib64/libc.so.6(__libc_start_main+0xf5) [0x2b6ec72cc555] AbinitioRelax.mpi.linuxgccrelease() [0x403007] [END_BACKTRACE] [FILE]: SIGSEGV [LINE]: 11 [START_MESSAGE] Segmentation Fault [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2021.16+release.8ee4f02 [COMMIT_DATE]: 2021-04-20T20:57:38.289184 [APPLICATION]: AbinitioRelax.mpi.linuxgccrelease [MODE]: Release [EXTRAS]: mpi (OpenMPI 4.1.4) [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-11)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -in -in:file -in:file:native=2LZMA.pdb -in:file:frag3=aa2LZMA03_05.200_v1_3 -in:file:frag9=aa2LZMA09_05.200_v1_3 -in:file:fasta=2LZMA.fasta -out -out:overwrite -out:nstruct=1 -out:file -out:file:scorefile=2LZM_broker.sc -out:file:silent=2LZM_broker.out -out:file:silent_struct_type=binary -run -run:protocol=broker -run:reinitialize_mover_for_each_job -score -score:find_neighbors_3dgrid -evaluation -evaluation:rmsd=NATIVE _core 2LZMA_core.txt -abinitio -abinitio:relax -abinitio:increase_cycles=10 -abinitio:rg_reweight=0.5 -abinitio:rsd_wt_helix=0.5 -abinitio:rsd_wt_loop=0.5 -broker -broker:setup=topology_broker.tpb -relax -relax:fast [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::save_crash_report(char const*, std::string const&, int)+0x25) [0x2aab26f228b5] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::signal_handler(int)+0xaa) [0x2aab26f229ea] /lib64/libc.so.6(+0x36400) [0x2aab2a126400] /lib64/libstdc++.so.6(std::string::assign(std::string const&)+0x19) [0x2aab29773d39] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols.1.so(protocols::jobdist::BaseJobDistributor::next_job(std::shared_ptr&, int&)+0x19b) [0x2aab210b69db] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::fold(core::pose::Pose&, std::shared_ptr)+0x65c) [0x2aab1a8bc13c] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::run()+0xd3) [0x2aab1a8beeb3] AbinitioRelax.mpi.linuxgccrelease() [0x402dea] /lib64/libc.so.6(__libc_start_main+0xf5) [0x2aab2a112555] AbinitioRelax.mpi.linuxgccrelease() [0x403007] [END_BACKTRACE] [FILE]: SIGSEGV [LINE]: 11 [START_MESSAGE] Segmentation Fault [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2021.16+release.8ee4f02 [COMMIT_DATE]: 2021-04-20T20:57:38.289184 [APPLICATION]: AbinitioRelax.mpi.linuxgccrelease [MODE]: Release [EXTRAS]: mpi (OpenMPI 4.1.4) [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-11)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -in -in:file -in:file:native=2LZMA.pdb -in:file:frag3=aa2LZMA03_05.200_v1_3 -in:file:frag9=aa2LZMA09_05.200_v1_3 -in:file:fasta=2LZMA.fasta -out -out:overwrite -out:nstruct=1 -out:file -out:file:scorefile=2LZM_broker.sc -out:file:silent=2LZM_broker.out -out:file:silent_struct_type=binary -run -run:protocol=broker -run:reinitialize_mover_for_each_job -score -score:find_neighbors_3dgrid -evaluation -evaluation:rmsd=NATIVE _core 2LZMA_core.txt -abinitio -abinitio:relax -abinitio:increase_cycles=10 -abinitio:rg_reweight=0.5 -abinitio:rsd_wt_helix=0.5 -abinitio:rsd_wt_loop=0.5 -broker -broker:setup=topology_broker.tpb -relax -relax:fast [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::save_crash_report(char const*, std::string const&, int)+0x25) [0x2b5418e948b5] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::signal_handler(int)+0xaa) [0x2b5418e949ea] /lib64/libc.so.6(+0x36400) [0x2b541c098400] /lib64/libstdc++.so.6(std::string::assign(std::string const&)+0x19) [0x2b541b6e5d39] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols.1.so(protocols::jobdist::BaseJobDistributor::next_job(std::shared_ptr&, int&)+0x19b) [0x2b54130289db] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::fold(core::pose::Pose&, std::shared_ptr)+0x65c) [0x2b540c82e13c] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::run()+0xd3) [0x2b540c830eb3] AbinitioRelax.mpi.linuxgccrelease() [0x402dea] /lib64/libc.so.6(__libc_start_main+0xf5) [0x2b541c084555] AbinitioRelax.mpi.linuxgccrelease() [0x403007] [END_BACKTRACE] [FILE]: SIGSEGV [LINE]: 11 [START_MESSAGE] Segmentation Fault [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2021.16+release.8ee4f02 [COMMIT_DATE]: 2021-04-20T20:57:38.289184 [APPLICATION]: AbinitioRelax.mpi.linuxgccrelease [MODE]: Release [EXTRAS]: mpi (OpenMPI 4.1.4) [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-11)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -in -in:file -in:file:native=2LZMA.pdb -in:file:frag3=aa2LZMA03_05.200_v1_3 -in:file:frag9=aa2LZMA09_05.200_v1_3 -in:file:fasta=2LZMA.fasta -out -out:overwrite -out:nstruct=1 -out:file -out:file:scorefile=2LZM_broker.sc -out:file:silent=2LZM_broker.out -out:file:silent_struct_type=binary -run -run:protocol=broker -run:reinitialize_mover_for_each_job -score -score:find_neighbors_3dgrid -evaluation -evaluation:rmsd=NATIVE _core 2LZMA_core.txt -abinitio -abinitio:relax -abinitio:increase_cycles=10 -abinitio:rg_reweight=0.5 -abinitio:rsd_wt_helix=0.5 -abinitio:rsd_wt_loop=0.5 -broker -broker:setup=topology_broker.tpb -relax -relax:fast [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::save_crash_report(char const*, std::string const&, int)+0x25) [0x2ae0d25068b5] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::signal_handler(int)+0xaa) [0x2ae0d25069ea] /lib64/libc.so.6(+0x36400) [0x2ae0d570a400] /lib64/libstdc++.so.6(std::string::assign(std::string const&)+0x19) [0x2ae0d4d57d39] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols.1.so(protocols::jobdist::BaseJobDistributor::next_job(std::shared_ptr&, int&)+0x19b) [0x2ae0cc69a9db] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::fold(core::pose::Pose&, std::shared_ptr)+0x65c) [0x2ae0c5ea013c] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::run()+0xd3) [0x2ae0c5ea2eb3] AbinitioRelax.mpi.linuxgccrelease() [0x402dea] /lib64/libc.so.6(__libc_start_main+0xf5) [0x2ae0d56f6555] AbinitioRelax.mpi.linuxgccrelease() [0x403007] [END_BACKTRACE] [FILE]: SIGSEGV [LINE]: 11 [START_MESSAGE] Segmentation Fault [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2021.16+release.8ee4f02 [COMMIT_DATE]: 2021-04-20T20:57:38.289184 [APPLICATION]: AbinitioRelax.mpi.linuxgccrelease [MODE]: Release [EXTRAS]: mpi (OpenMPI 4.1.4) [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-11)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -in -in:file -in:file:native=2LZMA.pdb -in:file:frag3=aa2LZMA03_05.200_v1_3 -in:file:frag9=aa2LZMA09_05.200_v1_3 -in:file:fasta=2LZMA.fasta -out -out:overwrite -out:nstruct=1 -out:file -out:file:scorefile=2LZM_broker.sc -out:file:silent=2LZM_broker.out -out:file:silent_struct_type=binary -run -run:protocol=broker -run:reinitialize_mover_for_each_job -score -score:find_neighbors_3dgrid -evaluation -evaluation:rmsd=NATIVE _core 2LZMA_core.txt -abinitio -abinitio:relax -abinitio:increase_cycles=10 -abinitio:rg_reweight=0.5 -abinitio:rsd_wt_helix=0.5 -abinitio:rsd_wt_loop=0.5 -broker -broker:setup=topology_broker.tpb -relax -relax:fast [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::save_crash_report(char const*, std::string const&, int)+0x25) [0x2b536e7f68b5] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::signal_handler(int)+0xaa) [0x2b536e7f69ea] /lib64/libc.so.6(+0x36400) [0x2b53719fa400] /lib64/libstdc++.so.6(std::string::assign(std::string const&)+0x19) [0x2b5371047d39] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols.1.so(protocols::jobdist::BaseJobDistributor::next_job(std::shared_ptr&, int&)+0x19b) [0x2b536898a9db] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::fold(core::pose::Pose&, std::shared_ptr)+0x65c) [0x2b536219013c] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::run()+0xd3) [0x2b5362192eb3] AbinitioRelax.mpi.linuxgccrelease() [0x402dea] /lib64/libc.so.6(__libc_start_main+0xf5) [0x2b53719e6555] AbinitioRelax.mpi.linuxgccrelease() [0x403007] [END_BACKTRACE] [FILE]: SIGSEGV [LINE]: 11 [START_MESSAGE] Segmentation Fault [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2021.16+release.8ee4f02 [COMMIT_DATE]: 2021-04-20T20:57:38.289184 [APPLICATION]: AbinitioRelax.mpi.linuxgccrelease [MODE]: Release [EXTRAS]: mpi (OpenMPI 4.1.4) [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-11)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -in -in:file -in:file:native=2LZMA.pdb -in:file:frag3=aa2LZMA03_05.200_v1_3 -in:file:frag9=aa2LZMA09_05.200_v1_3 -in:file:fasta=2LZMA.fasta -out -out:overwrite -out:nstruct=1 -out:file -out:file:scorefile=2LZM_broker.sc -out:file:silent=2LZM_broker.out -out:file:silent_struct_type=binary -run -run:protocol=broker -run:reinitialize_mover_for_each_job -score -score:find_neighbors_3dgrid -evaluation -evaluation:rmsd=NATIVE _core 2LZMA_core.txt -abinitio -abinitio:relax -abinitio:increase_cycles=10 -abinitio:rg_reweight=0.5 -abinitio:rsd_wt_helix=0.5 -abinitio:rsd_wt_loop=0.5 -broker -broker:setup=topology_broker.tpb -relax -relax:fast [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::save_crash_report(char const*, std::string const&, int)+0x25) [0x2af9866468b5] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::signal_handler(int)+0xaa) [0x2af9866469ea] /lib64/libc.so.6(+0x36400) [0x2af98984a400] /lib64/libstdc++.so.6(std::string::assign(std::string const&)+0x19) [0x2af988e97d39] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols.1.so(protocols::jobdist::BaseJobDistributor::next_job(std::shared_ptr&, int&)+0x19b) [0x2af9807da9db] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::fold(core::pose::Pose&, std::shared_ptr)+0x65c) [0x2af979fe013c] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::run()+0xd3) [0x2af979fe2eb3] AbinitioRelax.mpi.linuxgccrelease() [0x402dea] /lib64/libc.so.6(__libc_start_main+0xf5) [0x2af989836555] AbinitioRelax.mpi.linuxgccrelease() [0x403007] [END_BACKTRACE] [FILE]: SIGSEGV [LINE]: 11 [START_MESSAGE] Segmentation Fault [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2021.16+release.8ee4f02 [COMMIT_DATE]: 2021-04-20T20:57:38.289184 [APPLICATION]: AbinitioRelax.mpi.linuxgccrelease [MODE]: Release [EXTRAS]: mpi (OpenMPI 4.1.4) [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-11)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -in -in:file -in:file:native=2LZMA.pdb -in:file:frag3=aa2LZMA03_05.200_v1_3 -in:file:frag9=aa2LZMA09_05.200_v1_3 -in:file:fasta=2LZMA.fasta -out -out:overwrite -out:nstruct=1 -out:file -out:file:scorefile=2LZM_broker.sc -out:file:silent=2LZM_broker.out -out:file:silent_struct_type=binary -run -run:protocol=broker -run:reinitialize_mover_for_each_job -score -score:find_neighbors_3dgrid -evaluation -evaluation:rmsd=NATIVE _core 2LZMA_core.txt -abinitio -abinitio:relax -abinitio:increase_cycles=10 -abinitio:rg_reweight=0.5 -abinitio:rsd_wt_helix=0.5 -abinitio:rsd_wt_loop=0.5 -broker -broker:setup=topology_broker.tpb -relax -relax:fast [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::save_crash_report(char const*, std::string const&, int)+0x25) [0x2b22a68ce8b5] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::signal_handler(int)+0xaa) [0x2b22a68ce9ea] /lib64/libc.so.6(+0x36400) [0x2b22a9ad2400] /lib64/libstdc++.so.6(std::string::assign(std::string const&)+0x19) [0x2b22a911fd39] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols.1.so(protocols::jobdist::BaseJobDistributor::next_job(std::shared_ptr&, int&)+0x19b) [0x2b22a0a629db] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::fold(core::pose::Pose&, std::shared_ptr)+0x65c) [0x2b229a26813c] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::run()+0xd3) [0x2b229a26aeb3] AbinitioRelax.mpi.linuxgccrelease() [0x402dea] /lib64/libc.so.6(__libc_start_main+0xf5) [0x2b22a9abe555] AbinitioRelax.mpi.linuxgccrelease() [0x403007] [END_BACKTRACE] [FILE]: SIGSEGV [LINE]: 11 [START_MESSAGE] Segmentation Fault [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2021.16+release.8ee4f02 [COMMIT_DATE]: 2021-04-20T20:57:38.289184 [APPLICATION]: AbinitioRelax.mpi.linuxgccrelease [MODE]: Release [EXTRAS]: mpi (OpenMPI 4.1.4) [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-11)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -in -in:file -in:file:native=2LZMA.pdb -in:file:frag3=aa2LZMA03_05.200_v1_3 -in:file:frag9=aa2LZMA09_05.200_v1_3 -in:file:fasta=2LZMA.fasta -out -out:overwrite -out:nstruct=1 -out:file -out:file:scorefile=2LZM_broker.sc -out:file:silent=2LZM_broker.out -out:file:silent_struct_type=binary -run -run:protocol=broker -run:reinitialize_mover_for_each_job -score -score:find_neighbors_3dgrid -evaluation -evaluation:rmsd=NATIVE _core 2LZMA_core.txt -abinitio -abinitio:relax -abinitio:increase_cycles=10 -abinitio:rg_reweight=0.5 -abinitio:rsd_wt_helix=0.5 -abinitio:rsd_wt_loop=0.5 -broker -broker:setup=topology_broker.tpb -relax -relax:fast [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::save_crash_report(char const*, std::string const&, int)+0x25) [0x2b753cbd18b5] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::signal_handler(int)+0xaa) [0x2b753cbd19ea] /lib64/libc.so.6(+0x36400) [0x2b753fdd5400] /lib64/libstdc++.so.6(std::string::assign(std::string const&)+0x19) [0x2b753f422d39] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols.1.so(protocols::jobdist::BaseJobDistributor::next_job(std::shared_ptr&, int&)+0x19b) [0x2b7536d659db] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::fold(core::pose::Pose&, std::shared_ptr)+0x65c) [0x2b753056b13c] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::run()+0xd3) [0x2b753056deb3] AbinitioRelax.mpi.linuxgccrelease() [0x402dea] /lib64/libc.so.6(__libc_start_main+0xf5) [0x2b753fdc1555] AbinitioRelax.mpi.linuxgccrelease() [0x403007] [END_BACKTRACE] [FILE]: SIGSEGV [LINE]: 11 [START_MESSAGE] Segmentation Fault [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2021.16+release.8ee4f02 [COMMIT_DATE]: 2021-04-20T20:57:38.289184 [APPLICATION]: AbinitioRelax.mpi.linuxgccrelease [MODE]: Release [EXTRAS]: mpi (OpenMPI 4.1.4) [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-11)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -in -in:file -in:file:native=2LZMA.pdb -in:file:frag3=aa2LZMA03_05.200_v1_3 -in:file:frag9=aa2LZMA09_05.200_v1_3 -in:file:fasta=2LZMA.fasta -out -out:overwrite -out:nstruct=1 -out:file -out:file:scorefile=2LZM_broker.sc -out:file:silent=2LZM_broker.out -out:file:silent_struct_type=binary -run -run:protocol=broker -run:reinitialize_mover_for_each_job -score -score:find_neighbors_3dgrid -evaluation -evaluation:rmsd=NATIVE _core 2LZMA_core.txt -abinitio -abinitio:relax -abinitio:increase_cycles=10 -abinitio:rg_reweight=0.5 -abinitio:rsd_wt_helix=0.5 -abinitio:rsd_wt_loop=0.5 -broker -broker:setup=topology_broker.tpb -relax -relax:fast [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::save_crash_report(char const*, std::string const&, int)+0x25) [0x2ab16acd98b5] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::signal_handler(int)+0xaa) [0x2ab16acd99ea] /lib64/libc.so.6(+0x36400) [0x2ab16dedd400] /lib64/libstdc++.so.6(std::string::assign(std::string const&)+0x19) [0x2ab16d52ad39] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols.1.so(protocols::jobdist::BaseJobDistributor::next_job(std::shared_ptr&, int&)+0x19b) [0x2ab164e6d9db] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::fold(core::pose::Pose&, std::shared_ptr)+0x65c) [0x2ab15e67313c] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::run()+0xd3) [0x2ab15e675eb3] AbinitioRelax.mpi.linuxgccrelease() [0x402dea] /lib64/libc.so.6(__libc_start_main+0xf5) [0x2ab16dec9555] AbinitioRelax.mpi.linuxgccrelease() [0x403007] [END_BACKTRACE] [FILE]: SIGSEGV [LINE]: 11 [START_MESSAGE] Segmentation Fault [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2021.16+release.8ee4f02 [COMMIT_DATE]: 2021-04-20T20:57:38.289184 [APPLICATION]: AbinitioRelax.mpi.linuxgccrelease [MODE]: Release [EXTRAS]: mpi (OpenMPI 4.1.4) [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-11)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -in -in:file -in:file:native=2LZMA.pdb -in:file:frag3=aa2LZMA03_05.200_v1_3 -in:file:frag9=aa2LZMA09_05.200_v1_3 -in:file:fasta=2LZMA.fasta -out -out:overwrite -out:nstruct=1 -out:file -out:file:scorefile=2LZM_broker.sc -out:file:silent=2LZM_broker.out -out:file:silent_struct_type=binary -run -run:protocol=broker -run:reinitialize_mover_for_each_job -score -score:find_neighbors_3dgrid -evaluation -evaluation:rmsd=NATIVE _core 2LZMA_core.txt -abinitio -abinitio:relax -abinitio:increase_cycles=10 -abinitio:rg_reweight=0.5 -abinitio:rsd_wt_helix=0.5 -abinitio:rsd_wt_loop=0.5 -broker -broker:setup=topology_broker.tpb -relax -relax:fast [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::save_crash_report(char const*, std::string const&, int)+0x25) [0x2b3d225b98b5] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::signal_handler(int)+0xaa) [0x2b3d225b99ea] /lib64/libc.so.6(+0x36400) [0x2b3d257bd400] /lib64/libstdc++.so.6(std::string::assign(std::string const&)+0x19) [0x2b3d24e0ad39] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols.1.so(protocols::jobdist::BaseJobDistributor::next_job(std::shared_ptr&, int&)+0x19b) [0x2b3d1c74d9db] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::fold(core::pose::Pose&, std::shared_ptr)+0x65c) [0x2b3d15f5313c] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::run()+0xd3) [0x2b3d15f55eb3] AbinitioRelax.mpi.linuxgccrelease() [0x402dea] /lib64/libc.so.6(__libc_start_main+0xf5) [0x2b3d257a9555] AbinitioRelax.mpi.linuxgccrelease() [0x403007] [END_BACKTRACE] [FILE]: SIGSEGV [LINE]: 11 [START_MESSAGE] Segmentation Fault [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2021.16+release.8ee4f02 [COMMIT_DATE]: 2021-04-20T20:57:38.289184 [APPLICATION]: AbinitioRelax.mpi.linuxgccrelease [MODE]: Release [EXTRAS]: mpi (OpenMPI 4.1.4) [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-11)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -in -in:file -in:file:native=2LZMA.pdb -in:file:frag3=aa2LZMA03_05.200_v1_3 -in:file:frag9=aa2LZMA09_05.200_v1_3 -in:file:fasta=2LZMA.fasta -out -out:overwrite -out:nstruct=1 -out:file -out:file:scorefile=2LZM_broker.sc -out:file:silent=2LZM_broker.out -out:file:silent_struct_type=binary -run -run:protocol=broker -run:reinitialize_mover_for_each_job -score -score:find_neighbors_3dgrid -evaluation -evaluation:rmsd=NATIVE _core 2LZMA_core.txt -abinitio -abinitio:relax -abinitio:increase_cycles=10 -abinitio:rg_reweight=0.5 -abinitio:rsd_wt_helix=0.5 -abinitio:rsd_wt_loop=0.5 -broker -broker:setup=topology_broker.tpb -relax -relax:fast [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::save_crash_report(char const*, std::string const&, int)+0x25) [0x2b2ef4f398b5] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::signal_handler(int)+0xaa) [0x2b2ef4f399ea] /lib64/libc.so.6(+0x36400) [0x2b2ef813d400] /lib64/libstdc++.so.6(std::string::assign(std::string const&)+0x19) [0x2b2ef778ad39] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols.1.so(protocols::jobdist::BaseJobDistributor::next_job(std::shared_ptr&, int&)+0x19b) [0x2b2eef0cd9db] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::fold(core::pose::Pose&, std::shared_ptr)+0x65c) [0x2b2ee88d313c] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::run()+0xd3) [0x2b2ee88d5eb3] AbinitioRelax.mpi.linuxgccrelease() [0x402dea] /lib64/libc.so.6(__libc_start_main+0xf5) [0x2b2ef8129555] AbinitioRelax.mpi.linuxgccrelease() [0x403007] [END_BACKTRACE] [FILE]: SIGSEGV [LINE]: 11 [START_MESSAGE] Segmentation Fault [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2021.16+release.8ee4f02 [COMMIT_DATE]: 2021-04-20T20:57:38.289184 [APPLICATION]: AbinitioRelax.mpi.linuxgccrelease [MODE]: Release [EXTRAS]: mpi (OpenMPI 4.1.4) [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-11)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -in -in:file -in:file:native=2LZMA.pdb -in:file:frag3=aa2LZMA03_05.200_v1_3 -in:file:frag9=aa2LZMA09_05.200_v1_3 -in:file:fasta=2LZMA.fasta -out -out:overwrite -out:nstruct=1 -out:file -out:file:scorefile=2LZM_broker.sc -out:file:silent=2LZM_broker.out -out:file:silent_struct_type=binary -run -run:protocol=broker -run:reinitialize_mover_for_each_job -score -score:find_neighbors_3dgrid -evaluation -evaluation:rmsd=NATIVE _core 2LZMA_core.txt -abinitio -abinitio:relax -abinitio:increase_cycles=10 -abinitio:rg_reweight=0.5 -abinitio:rsd_wt_helix=0.5 -abinitio:rsd_wt_loop=0.5 -broker -broker:setup=topology_broker.tpb -relax -relax:fast [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::save_crash_report(char const*, std::string const&, int)+0x25) [0x2b4e553a88b5] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::signal_handler(int)+0xaa) [0x2b4e553a89ea] /lib64/libc.so.6(+0x36400) [0x2b4e585ac400] /lib64/libstdc++.so.6(std::string::assign(std::string const&)+0x19) [0x2b4e57bf9d39] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols.1.so(protocols::jobdist::BaseJobDistributor::next_job(std::shared_ptr&, int&)+0x19b) [0x2b4e4f53c9db] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::fold(core::pose::Pose&, std::shared_ptr)+0x65c) [0x2b4e48d4213c] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::run()+0xd3) [0x2b4e48d44eb3] AbinitioRelax.mpi.linuxgccrelease() [0x402dea] /lib64/libc.so.6(__libc_start_main+0xf5) [0x2b4e58598555] AbinitioRelax.mpi.linuxgccrelease() [0x403007] [END_BACKTRACE] [FILE]: SIGSEGV [LINE]: 11 [START_MESSAGE] Segmentation Fault [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2021.16+release.8ee4f02 [COMMIT_DATE]: 2021-04-20T20:57:38.289184 [APPLICATION]: AbinitioRelax.mpi.linuxgccrelease [MODE]: Release [EXTRAS]: mpi (OpenMPI 4.1.4) [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-11)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -in -in:file -in:file:native=2LZMA.pdb -in:file:frag3=aa2LZMA03_05.200_v1_3 -in:file:frag9=aa2LZMA09_05.200_v1_3 -in:file:fasta=2LZMA.fasta -out -out:overwrite -out:nstruct=1 -out:file -out:file:scorefile=2LZM_broker.sc -out:file:silent=2LZM_broker.out -out:file:silent_struct_type=binary -run -run:protocol=broker -run:reinitialize_mover_for_each_job -score -score:find_neighbors_3dgrid -evaluation -evaluation:rmsd=NATIVE _core 2LZMA_core.txt -abinitio -abinitio:relax -abinitio:increase_cycles=10 -abinitio:rg_reweight=0.5 -abinitio:rsd_wt_helix=0.5 -abinitio:rsd_wt_loop=0.5 -broker -broker:setup=topology_broker.tpb -relax -relax:fast [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::save_crash_report(char const*, std::string const&, int)+0x25) [0x2b4fb24d28b5] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::signal_handler(int)+0xaa) [0x2b4fb24d29ea] /lib64/libc.so.6(+0x36400) [0x2b4fb56d6400] /lib64/libstdc++.so.6(std::string::assign(std::string const&)+0x19) [0x2b4fb4d23d39] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols.1.so(protocols::jobdist::BaseJobDistributor::next_job(std::shared_ptr&, int&)+0x19b) [0x2b4fac6669db] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::fold(core::pose::Pose&, std::shared_ptr)+0x65c) [0x2b4fa5e6c13c] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::run()+0xd3) [0x2b4fa5e6eeb3] AbinitioRelax.mpi.linuxgccrelease() [0x402dea] /lib64/libc.so.6(__libc_start_main+0xf5) [0x2b4fb56c2555] AbinitioRelax.mpi.linuxgccrelease() [0x403007] [END_BACKTRACE] [FILE]: SIGSEGV [LINE]: 11 [START_MESSAGE] Segmentation Fault [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2021.16+release.8ee4f02 [COMMIT_DATE]: 2021-04-20T20:57:38.289184 [APPLICATION]: AbinitioRelax.mpi.linuxgccrelease [MODE]: Release [EXTRAS]: mpi (OpenMPI 4.1.4) [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-11)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -in -in:file -in:file:native=2LZMA.pdb -in:file:frag3=aa2LZMA03_05.200_v1_3 -in:file:frag9=aa2LZMA09_05.200_v1_3 -in:file:fasta=2LZMA.fasta -out -out:overwrite -out:nstruct=1 -out:file -out:file:scorefile=2LZM_broker.sc -out:file:silent=2LZM_broker.out -out:file:silent_struct_type=binary -run -run:protocol=broker -run:reinitialize_mover_for_each_job -score -score:find_neighbors_3dgrid -evaluation -evaluation:rmsd=NATIVE _core 2LZMA_core.txt -abinitio -abinitio:relax -abinitio:increase_cycles=10 -abinitio:rg_reweight=0.5 -abinitio:rsd_wt_helix=0.5 -abinitio:rsd_wt_loop=0.5 -broker -broker:setup=topology_broker.tpb -relax -relax:fast [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::save_crash_report(char const*, std::string const&, int)+0x25) [0x2b301cb118b5] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::signal_handler(int)+0xaa) [0x2b301cb119ea] /lib64/libc.so.6(+0x36400) [0x2b301fd15400] /lib64/libstdc++.so.6(std::string::assign(std::string const&)+0x19) [0x2b301f362d39] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols.1.so(protocols::jobdist::BaseJobDistributor::next_job(std::shared_ptr&, int&)+0x19b) [0x2b3016ca59db] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::fold(core::pose::Pose&, std::shared_ptr)+0x65c) [0x2b30104ab13c] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::run()+0xd3) [0x2b30104adeb3] AbinitioRelax.mpi.linuxgccrelease() [0x402dea] /lib64/libc.so.6(__libc_start_main+0xf5) [0x2b301fd01555] AbinitioRelax.mpi.linuxgccrelease() [0x403007] [END_BACKTRACE] [FILE]: SIGSEGV [LINE]: 11 [START_MESSAGE] Segmentation Fault [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2021.16+release.8ee4f02 [COMMIT_DATE]: 2021-04-20T20:57:38.289184 [APPLICATION]: AbinitioRelax.mpi.linuxgccrelease [MODE]: Release [EXTRAS]: mpi (OpenMPI 4.1.4) [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-11)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -in -in:file -in:file:native=2LZMA.pdb -in:file:frag3=aa2LZMA03_05.200_v1_3 -in:file:frag9=aa2LZMA09_05.200_v1_3 -in:file:fasta=2LZMA.fasta -out -out:overwrite -out:nstruct=1 -out:file -out:file:scorefile=2LZM_broker.sc -out:file:silent=2LZM_broker.out -out:file:silent_struct_type=binary -run -run:protocol=broker -run:reinitialize_mover_for_each_job -score -score:find_neighbors_3dgrid -evaluation -evaluation:rmsd=NATIVE _core 2LZMA_core.txt -abinitio -abinitio:relax -abinitio:increase_cycles=10 -abinitio:rg_reweight=0.5 -abinitio:rsd_wt_helix=0.5 -abinitio:rsd_wt_loop=0.5 -broker -broker:setup=topology_broker.tpb -relax -relax:fast [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::save_crash_report(char const*, std::string const&, int)+0x25) [0x2aff75be08b5] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::signal_handler(int)+0xaa) [0x2aff75be09ea] /lib64/libc.so.6(+0x36400) [0x2aff78de4400] /lib64/libstdc++.so.6(std::string::assign(std::string const&)+0x19) [0x2aff78431d39] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols.1.so(protocols::jobdist::BaseJobDistributor::next_job(std::shared_ptr&, int&)+0x19b) [0x2aff6fd749db] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::fold(core::pose::Pose&, std::shared_ptr)+0x65c) [0x2aff6957a13c] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::run()+0xd3) [0x2aff6957ceb3] AbinitioRelax.mpi.linuxgccrelease() [0x402dea] /lib64/libc.so.6(__libc_start_main+0xf5) [0x2aff78dd0555] AbinitioRelax.mpi.linuxgccrelease() [0x403007] [END_BACKTRACE] [FILE]: SIGSEGV [LINE]: 11 [START_MESSAGE] Segmentation Fault [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2021.16+release.8ee4f02 [COMMIT_DATE]: 2021-04-20T20:57:38.289184 [APPLICATION]: AbinitioRelax.mpi.linuxgccrelease [MODE]: Release [EXTRAS]: mpi (OpenMPI 4.1.4) [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-11)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -in -in:file -in:file:native=2LZMA.pdb -in:file:frag3=aa2LZMA03_05.200_v1_3 -in:file:frag9=aa2LZMA09_05.200_v1_3 -in:file:fasta=2LZMA.fasta -out -out:overwrite -out:nstruct=1 -out:file -out:file:scorefile=2LZM_broker.sc -out:file:silent=2LZM_broker.out -out:file:silent_struct_type=binary -run -run:protocol=broker -run:reinitialize_mover_for_each_job -score -score:find_neighbors_3dgrid -evaluation -evaluation:rmsd=NATIVE _core 2LZMA_core.txt -abinitio -abinitio:relax -abinitio:increase_cycles=10 -abinitio:rg_reweight=0.5 -abinitio:rsd_wt_helix=0.5 -abinitio:rsd_wt_loop=0.5 -broker -broker:setup=topology_broker.tpb -relax -relax:fast [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::save_crash_report(char const*, std::string const&, int)+0x25) [0x2b1475e108b5] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::signal_handler(int)+0xaa) [0x2b1475e109ea] /lib64/libc.so.6(+0x36400) [0x2b1479014400] /lib64/libstdc++.so.6(std::string::assign(std::string const&)+0x19) [0x2b1478661d39] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols.1.so(protocols::jobdist::BaseJobDistributor::next_job(std::shared_ptr&, int&)+0x19b) [0x2b146ffa49db] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::fold(core::pose::Pose&, std::shared_ptr)+0x65c) [0x2b14697aa13c] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::run()+0xd3) [0x2b14697aceb3] AbinitioRelax.mpi.linuxgccrelease() [0x402dea] /lib64/libc.so.6(__libc_start_main+0xf5) [0x2b1479000555] AbinitioRelax.mpi.linuxgccrelease() [0x403007] [END_BACKTRACE] [FILE]: SIGSEGV [LINE]: 11 [START_MESSAGE] Segmentation Fault [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2021.16+release.8ee4f02 [COMMIT_DATE]: 2021-04-20T20:57:38.289184 [APPLICATION]: AbinitioRelax.mpi.linuxgccrelease [MODE]: Release [EXTRAS]: mpi (OpenMPI 4.1.4) [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-11)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -in -in:file -in:file:native=2LZMA.pdb -in:file:frag3=aa2LZMA03_05.200_v1_3 -in:file:frag9=aa2LZMA09_05.200_v1_3 -in:file:fasta=2LZMA.fasta -out -out:overwrite -out:nstruct=1 -out:file -out:file:scorefile=2LZM_broker.sc -out:file:silent=2LZM_broker.out -out:file:silent_struct_type=binary -run -run:protocol=broker -run:reinitialize_mover_for_each_job -score -score:find_neighbors_3dgrid -evaluation -evaluation:rmsd=NATIVE _core 2LZMA_core.txt -abinitio -abinitio:relax -abinitio:increase_cycles=10 -abinitio:rg_reweight=0.5 -abinitio:rsd_wt_helix=0.5 -abinitio:rsd_wt_loop=0.5 -broker -broker:setup=topology_broker.tpb -relax -relax:fast [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::save_crash_report(char const*, std::string const&, int)+0x25) [0x2b6af91cb8b5] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::signal_handler(int)+0xaa) [0x2b6af91cb9ea] /lib64/libc.so.6(+0x36400) [0x2b6afc3cf400] /lib64/libstdc++.so.6(std::string::assign(std::string const&)+0x19) [0x2b6afba1cd39] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols.1.so(protocols::jobdist::BaseJobDistributor::next_job(std::shared_ptr&, int&)+0x19b) [0x2b6af335f9db] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::fold(core::pose::Pose&, std::shared_ptr)+0x65c) [0x2b6aecb6513c] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::run()+0xd3) [0x2b6aecb67eb3] AbinitioRelax.mpi.linuxgccrelease() [0x402dea] /lib64/libc.so.6(__libc_start_main+0xf5) [0x2b6afc3bb555] AbinitioRelax.mpi.linuxgccrelease() [0x403007] [END_BACKTRACE] [FILE]: SIGSEGV [LINE]: 11 [START_MESSAGE] Segmentation Fault [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2021.16+release.8ee4f02 [COMMIT_DATE]: 2021-04-20T20:57:38.289184 [APPLICATION]: AbinitioRelax.mpi.linuxgccrelease [MODE]: Release [EXTRAS]: mpi (OpenMPI 4.1.4) [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-11)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -in -in:file -in:file:native=2LZMA.pdb -in:file:frag3=aa2LZMA03_05.200_v1_3 -in:file:frag9=aa2LZMA09_05.200_v1_3 -in:file:fasta=2LZMA.fasta -out -out:overwrite -out:nstruct=1 -out:file -out:file:scorefile=2LZM_broker.sc -out:file:silent=2LZM_broker.out -out:file:silent_struct_type=binary -run -run:protocol=broker -run:reinitialize_mover_for_each_job -score -score:find_neighbors_3dgrid -evaluation -evaluation:rmsd=NATIVE _core 2LZMA_core.txt -abinitio -abinitio:relax -abinitio:increase_cycles=10 -abinitio:rg_reweight=0.5 -abinitio:rsd_wt_helix=0.5 -abinitio:rsd_wt_loop=0.5 -broker -broker:setup=topology_broker.tpb -relax -relax:fast [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::save_crash_report(char const*, std::string const&, int)+0x25) [0x2b2a084288b5] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::signal_handler(int)+0xaa) [0x2b2a084289ea] /lib64/libc.so.6(+0x36400) [0x2b2a0b62c400] /lib64/libstdc++.so.6(std::string::assign(std::string const&)+0x19) [0x2b2a0ac79d39] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols.1.so(protocols::jobdist::BaseJobDistributor::next_job(std::shared_ptr&, int&)+0x19b) [0x2b2a025bc9db] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::fold(core::pose::Pose&, std::shared_ptr)+0x65c) [0x2b29fbdc213c] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::run()+0xd3) [0x2b29fbdc4eb3] AbinitioRelax.mpi.linuxgccrelease() [0x402dea] /lib64/libc.so.6(__libc_start_main+0xf5) [0x2b2a0b618555] AbinitioRelax.mpi.linuxgccrelease() [0x403007] [END_BACKTRACE] [FILE]: SIGSEGV [LINE]: 11 [START_MESSAGE] Segmentation Fault [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2021.16+release.8ee4f02 [COMMIT_DATE]: 2021-04-20T20:57:38.289184 [APPLICATION]: AbinitioRelax.mpi.linuxgccrelease [MODE]: Release [EXTRAS]: mpi (OpenMPI 4.1.4) [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-11)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -in -in:file -in:file:native=2LZMA.pdb -in:file:frag3=aa2LZMA03_05.200_v1_3 -in:file:frag9=aa2LZMA09_05.200_v1_3 -in:file:fasta=2LZMA.fasta -out -out:overwrite -out:nstruct=1 -out:file -out:file:scorefile=2LZM_broker.sc -out:file:silent=2LZM_broker.out -out:file:silent_struct_type=binary -run -run:protocol=broker -run:reinitialize_mover_for_each_job -score -score:find_neighbors_3dgrid -evaluation -evaluation:rmsd=NATIVE _core 2LZMA_core.txt -abinitio -abinitio:relax -abinitio:increase_cycles=10 -abinitio:rg_reweight=0.5 -abinitio:rsd_wt_helix=0.5 -abinitio:rsd_wt_loop=0.5 -broker -broker:setup=topology_broker.tpb -relax -relax:fast [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::save_crash_report(char const*, std::string const&, int)+0x25) [0x2aafe06b18b5] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::signal_handler(int)+0xaa) [0x2aafe06b19ea] /lib64/libc.so.6(+0x36400) [0x2aafe38b5400] /lib64/libstdc++.so.6(std::string::assign(std::string const&)+0x19) [0x2aafe2f02d39] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols.1.so(protocols::jobdist::BaseJobDistributor::next_job(std::shared_ptr&, int&)+0x19b) [0x2aafda8459db] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::fold(core::pose::Pose&, std::shared_ptr)+0x65c) [0x2aafd404b13c] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::run()+0xd3) [0x2aafd404deb3] AbinitioRelax.mpi.linuxgccrelease() [0x402dea] /lib64/libc.so.6(__libc_start_main+0xf5) [0x2aafe38a1555] AbinitioRelax.mpi.linuxgccrelease() [0x403007] [END_BACKTRACE] [FILE]: SIGSEGV [LINE]: 11 [START_MESSAGE] Segmentation Fault [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2021.16+release.8ee4f02 [COMMIT_DATE]: 2021-04-20T20:57:38.289184 [APPLICATION]: AbinitioRelax.mpi.linuxgccrelease [MODE]: Release [EXTRAS]: mpi (OpenMPI 4.1.4) [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-11)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -in -in:file -in:file:native=2LZMA.pdb -in:file:frag3=aa2LZMA03_05.200_v1_3 -in:file:frag9=aa2LZMA09_05.200_v1_3 -in:file:fasta=2LZMA.fasta -out -out:overwrite -out:nstruct=1 -out:file -out:file:scorefile=2LZM_broker.sc -out:file:silent=2LZM_broker.out -out:file:silent_struct_type=binary -run -run:protocol=broker -run:reinitialize_mover_for_each_job -score -score:find_neighbors_3dgrid -evaluation -evaluation:rmsd=NATIVE _core 2LZMA_core.txt -abinitio -abinitio:relax -abinitio:increase_cycles=10 -abinitio:rg_reweight=0.5 -abinitio:rsd_wt_helix=0.5 -abinitio:rsd_wt_loop=0.5 -broker -broker:setup=topology_broker.tpb -relax -relax:fast [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::save_crash_report(char const*, std::string const&, int)+0x25) [0x2b827d2bd8b5] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::signal_handler(int)+0xaa) [0x2b827d2bd9ea] /lib64/libc.so.6(+0x36400) [0x2b82804c1400] /lib64/libstdc++.so.6(std::string::assign(std::string const&)+0x19) [0x2b827fb0ed39] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols.1.so(protocols::jobdist::BaseJobDistributor::next_job(std::shared_ptr&, int&)+0x19b) [0x2b82774519db] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::fold(core::pose::Pose&, std::shared_ptr)+0x65c) [0x2b8270c5713c] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::run()+0xd3) [0x2b8270c59eb3] AbinitioRelax.mpi.linuxgccrelease() [0x402dea] /lib64/libc.so.6(__libc_start_main+0xf5) [0x2b82804ad555] AbinitioRelax.mpi.linuxgccrelease() [0x403007] [END_BACKTRACE] [FILE]: SIGSEGV [LINE]: 11 [START_MESSAGE] Segmentation Fault [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2021.16+release.8ee4f02 [COMMIT_DATE]: 2021-04-20T20:57:38.289184 [APPLICATION]: AbinitioRelax.mpi.linuxgccrelease [MODE]: Release [EXTRAS]: mpi (OpenMPI 4.1.4) [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-11)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -in -in:file -in:file:native=2LZMA.pdb -in:file:frag3=aa2LZMA03_05.200_v1_3 -in:file:frag9=aa2LZMA09_05.200_v1_3 -in:file:fasta=2LZMA.fasta -out -out:overwrite -out:nstruct=1 -out:file -out:file:scorefile=2LZM_broker.sc -out:file:silent=2LZM_broker.out -out:file:silent_struct_type=binary -run -run:protocol=broker -run:reinitialize_mover_for_each_job -score -score:find_neighbors_3dgrid -evaluation -evaluation:rmsd=NATIVE _core 2LZMA_core.txt -abinitio -abinitio:relax -abinitio:increase_cycles=10 -abinitio:rg_reweight=0.5 -abinitio:rsd_wt_helix=0.5 -abinitio:rsd_wt_loop=0.5 -broker -broker:setup=topology_broker.tpb -relax -relax:fast [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::save_crash_report(char const*, std::string const&, int)+0x25) [0x2b4fa694d8b5] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::signal_handler(int)+0xaa) [0x2b4fa694d9ea] /lib64/libc.so.6(+0x36400) [0x2b4fa9b51400] /lib64/libstdc++.so.6(std::string::assign(std::string const&)+0x19) [0x2b4fa919ed39] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols.1.so(protocols::jobdist::BaseJobDistributor::next_job(std::shared_ptr&, int&)+0x19b) [0x2b4fa0ae19db] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::fold(core::pose::Pose&, std::shared_ptr)+0x65c) [0x2b4f9a2e713c] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::run()+0xd3) [0x2b4f9a2e9eb3] AbinitioRelax.mpi.linuxgccrelease() [0x402dea] /lib64/libc.so.6(__libc_start_main+0xf5) [0x2b4fa9b3d555] AbinitioRelax.mpi.linuxgccrelease() [0x403007] [END_BACKTRACE] [FILE]: SIGSEGV [LINE]: 11 [START_MESSAGE] Segmentation Fault [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2021.16+release.8ee4f02 [COMMIT_DATE]: 2021-04-20T20:57:38.289184 [APPLICATION]: AbinitioRelax.mpi.linuxgccrelease [MODE]: Release [EXTRAS]: mpi (OpenMPI 4.1.4) [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-11)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -in -in:file -in:file:native=2LZMA.pdb -in:file:frag3=aa2LZMA03_05.200_v1_3 -in:file:frag9=aa2LZMA09_05.200_v1_3 -in:file:fasta=2LZMA.fasta -out -out:overwrite -out:nstruct=1 -out:file -out:file:scorefile=2LZM_broker.sc -out:file:silent=2LZM_broker.out -out:file:silent_struct_type=binary -run -run:protocol=broker -run:reinitialize_mover_for_each_job -score -score:find_neighbors_3dgrid -evaluation -evaluation:rmsd=NATIVE _core 2LZMA_core.txt -abinitio -abinitio:relax -abinitio:increase_cycles=10 -abinitio:rg_reweight=0.5 -abinitio:rsd_wt_helix=0.5 -abinitio:rsd_wt_loop=0.5 -broker -broker:setup=topology_broker.tpb -relax -relax:fast [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::save_crash_report(char const*, std::string const&, int)+0x25) [0x2b1f96f548b5] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::signal_handler(int)+0xaa) [0x2b1f96f549ea] /lib64/libc.so.6(+0x36400) [0x2b1f9a158400] /lib64/libstdc++.so.6(std::string::assign(std::string const&)+0x19) [0x2b1f997a5d39] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols.1.so(protocols::jobdist::BaseJobDistributor::next_job(std::shared_ptr&, int&)+0x19b) [0x2b1f910e89db] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::fold(core::pose::Pose&, std::shared_ptr)+0x65c) [0x2b1f8a8ee13c] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::run()+0xd3) [0x2b1f8a8f0eb3] AbinitioRelax.mpi.linuxgccrelease() [0x402dea] /lib64/libc.so.6(__libc_start_main+0xf5) [0x2b1f9a144555] AbinitioRelax.mpi.linuxgccrelease() [0x403007] [END_BACKTRACE] [FILE]: SIGSEGV [LINE]: 11 [START_MESSAGE] Segmentation Fault [END_MESSAGE] [END_CRASH_REPORT] ############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2021.16+release.8ee4f02 [COMMIT_DATE]: 2021-04-20T20:57:38.289184 [APPLICATION]: AbinitioRelax.mpi.linuxgccrelease [MODE]: Release [EXTRAS]: mpi (OpenMPI 4.1.4) [OS]: GNU/Linux [COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-11)" [STDLIB]: libstdc++ version 20150623 [START_OPTIONS] -in -in:file -in:file:native=2LZMA.pdb -in:file:frag3=aa2LZMA03_05.200_v1_3 -in:file:frag9=aa2LZMA09_05.200_v1_3 -in:file:fasta=2LZMA.fasta -out -out:overwrite -out:nstruct=1 -out:file -out:file:scorefile=2LZM_broker.sc -out:file:silent=2LZM_broker.out -out:file:silent_struct_type=binary -run -run:protocol=broker -run:reinitialize_mover_for_each_job -score -score:find_neighbors_3dgrid -evaluation -evaluation:rmsd=NATIVE _core 2LZMA_core.txt -abinitio -abinitio:relax -abinitio:increase_cycles=10 -abinitio:rg_reweight=0.5 -abinitio:rsd_wt_helix=0.5 -abinitio:rsd_wt_loop=0.5 -broker -broker:setup=topology_broker.tpb -relax -relax:fast [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::save_crash_report(char const*, std::string const&, int)+0x25) [0x2b41806718b5] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libutility.so(utility::signal_handler(int)+0xaa) [0x2b41806719ea] /lib64/libc.so.6(+0x36400) [0x2b4183875400] /lib64/libstdc++.so.6(std::string::assign(std::string const&)+0x19) [0x2b4182ec2d39] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols.1.so(protocols::jobdist::BaseJobDistributor::next_job(std::shared_ptr&, int&)+0x19b) [0x2b417a8059db] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::fold(core::pose::Pose&, std::shared_ptr)+0x65c) [0x2b417400b13c] /data/home/ldx022/software/rosetta_src_2021.16.61629_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libprotocols_b.6.so(protocols::abinitio::AbrelaxApplication::run()+0xd3) [0x2b417400deb3] AbinitioRelax.mpi.linuxgccrelease() [0x402dea] /lib64/libc.so.6(__libc_start_main+0xf5) [0x2b4183861555] AbinitioRelax.mpi.linuxgccrelease() [0x403007] [END_BACKTRACE] [FILE]: SIGSEGV [LINE]: 11 [START_MESSAGE] Segmentation Fault [END_MESSAGE] [END_CRASH_REPORT]