############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.08+release.cb1caba [COMMIT_DATE]: 2020-02-22T18:49:33.865989 [APPLICATION]: /home/gszwbwsk/Rosetta/rosetta_src_2020.08.61146_bundle/main/source/bin/rosetta_scripts.default.linuxgccrelease [MODE]: Release [EXTRAS]: default [OS]: GNU/Linux [COMPILER]: GCC version "7.2.0" [STDLIB]: libstdc++ version 20170814 [START_OPTIONS] -in:ignore_unrecognized_res -in:file:s=P2Y12_PAR1_LB_ligand_ECL2.pdb -in:file:extra_res_fa=VPX.params -in:file:load_PDB_components=false -in:file:fullatom -out:nstruct=1 -out:suffix=_A -out:pdb -out:mute=core.io.database protocols.looprelax.FragmentPerturber core.fragments.ConstantLengthFragSet -parser -parser:protocol=nothing.xml -packing:ex1 -packing:ex2 -constraints:cst_fa_file=disulf.cst -constraints:cst_fa_weight=1000 -corrections:beta_nov16 -loops:loop_file=P2Y12.loops -loops:frag_sizes=9 3 1 -loops:frag_files=P2Y12_9_frag.txt P2Y12_3_frag.txt none -loops:remodel=perturb_kic_with_fragments -loops:refine=refine_kic_with_fragments [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /home/gszwbwsk/Rosetta/rosetta_src_2020.08.61146_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/7.2/default/libcore.6.so(backtrace_string[abi:cxx11](int)+0x43) [0x2aaab5a91ea3] /home/gszwbwsk/Rosetta/rosetta_src_2020.08.61146_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/7.2/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string, std::allocator > const&)+0xd3) [0x2aaabb20cb33] /home/gszwbwsk/Rosetta/rosetta_src_2020.08.61146_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/7.2/default/libutility.so(utility::UtilityExitException::UtilityExitException(char const*, int, std::__cxx11::basic_string, std::allocator > const&)+0xfb) [0x2aaabb2acd1b] /home/gszwbwsk/Rosetta/rosetta_src_2020.08.61146_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/7.2/default/libutility.so(utility::exit(char const*, int, std::__cxx11::basic_string, std::allocator > const&, int)+0x36) [0x2aaabb2acae6] /home/gszwbwsk/Rosetta/rosetta_src_2020.08.61146_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/7.2/default/libprotocols.3.so(protocols::loops::fold_tree_from_loops(core::pose::Pose const&, protocols::loops::Loops const&, core::kinematics::FoldTree&, bool)+0x719) [0x2aaab3d366c9] /home/gszwbwsk/Rosetta/rosetta_src_2020.08.61146_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/7.2/default/libprotocols.3.so(protocols::loop_modeling::LoopMover::setup_fold_tree(core::pose::Pose&, std::shared_ptr, protocols::loop_modeling::FoldTreeRequest)+0x90b) [0x2aaab341704b] /home/gszwbwsk/Rosetta/rosetta_src_2020.08.61146_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/7.2/default/libprotocols.3.so(protocols::loop_modeling::LoopMover::apply(core::pose::Pose&)+0x1a10) [0x2aaab3418c90] /home/gszwbwsk/Rosetta/rosetta_src_2020.08.61146_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/7.2/default/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply_mover(core::pose::Pose&, protocols::rosetta_scripts::ParsedProtocol::MoverFilterPair const&)+0x28d) [0x2aaab51c29fd] /home/gszwbwsk/Rosetta/rosetta_src_2020.08.61146_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/7.2/default/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::sequence_protocol(core::pose::Pose&, __gnu_cxx::__normal_iterator > >)+0x3b) [0x2aaab51c3a8b] /home/gszwbwsk/Rosetta/rosetta_src_2020.08.61146_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/7.2/default/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply(core::pose::Pose&)+0x19e) [0x2aaab51c434e] /home/gszwbwsk/Rosetta/rosetta_src_2020.08.61146_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/7.2/default/libprotocols.1.so(protocols::jd2::JobDistributor::run_one_job(std::shared_ptr&, long, std::__cxx11::basic_string, std::allocator >&, std::__cxx11::basic_string, std::allocator >&, unsigned long&, unsigned long&, bool)+0xcd0) [0x2aaab53523e0] /home/gszwbwsk/Rosetta/rosetta_src_2020.08.61146_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/7.2/default/libprotocols.1.so(protocols::jd2::JobDistributor::go_main(std::shared_ptr)+0x1ab) [0x2aaab535449b] /home/gszwbwsk/Rosetta/rosetta_src_2020.08.61146_bundle/main/source/build/src/release/linux/3.10/64/x86/gcc/7.2/default/libprotocols.1.so(protocols::jd2::FileSystemJobDistributor::go(std::shared_ptr)+0x46) [0x2aaab533a856] /home/gszwbwsk/Rosetta/rosetta_src_2020.08.61146_bundle/main/source/bin/rosetta_scripts.default.linuxgccrelease() [0x40205a] /lib64/libc.so.6(__libc_start_main+0xf5) [0x2aaabd111495] /home/gszwbwsk/Rosetta/rosetta_src_2020.08.61146_bundle/main/source/bin/rosetta_scripts.default.linuxgccrelease() [0x4022fe] [END_BACKTRACE] [FILE]: src/protocols/loops/loops_main.cc [LINE]: 253 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Can't build a fold tree from a loop with an unspecified cut point. [END_MESSAGE] [END_CRASH_REPORT]