############################################################################################################## # # Rosetta crash log. Please submit the contents of this file to http://crash.rosettacommons.org/ # or use the script Rosetta/main/source/scripts/python/public/report_crashes.py # [START_CRASH_REPORT] [ROSETTA_VERSION]: 2020.50+release.1295438 [COMMIT_DATE]: 2020-12-13T19:49:34.241001 [APPLICATION]: rosetta_scripts.mpi.linuxgccrelease [MODE]: Release [EXTRAS]: mpi (OpenMPI 4.0.3) [OS]: GNU/Linux [COMPILER]: GCC version "9.3.0" [STDLIB]: libstdc++ version 20200808 [START_OPTIONS] -in:ignore_unrecognized_res -in:file:s=2BRR.ppk_ideal.pdb -out:overwrite -out:file:fullatom -out:file:pdb_comments -out:path:pdb=pdb/ -run:nodelay -parser:protocol=AbPredict_xsd.xml -parser:script_vars=template_pdb=2BRR.ppk_ideal.pdb H1_H2.db=AB_db_files/H1_H2.db H3.db=AB_db_files/H3.db L3.db=AB_db_files/L3.db L1_L2.db=AB_db_files/L1_L2.db rb.db=AB_db_files/rb.db entry_H1_H2=5CD3E entry_L1_L2=4WCYL entry_H3=4YBQD entry_L3=4GAGL sequence=MVLTQSPASLAVSLGQRATISCKASQSVDYDGDSYMNWYQQKPGQPPKLLIYVASNLKSGIPARFSGSGSGTDFTLNIHPVEEEDAATYYCQQSNEDPFTFGSGTKLEVQLQQSGPELVKPGASVKMSCKASGYTFTDYYMKWVKQSHGKSLEWIGDINPNNGGTGYNQKFKGKATLTVDKSSSTAYMQLNSLTSEDSAVYYCANDYGSTYGFAYWGQGTLVTVS -packing:use_input_sc [END_OPTIONS] [START_BACKTRACE]: RAW_LIBC /home/aravinda1879/software/rosetta_bin_linux_2020.50.61505_bundle/main/source/build/src/release/linux/5.8/64/x86/gcc/9/mpi/libutility.so(backtrace_string[abi:cxx11](int)+0x5a) [0x7f9464c0152a] /home/aravinda1879/software/rosetta_bin_linux_2020.50.61505_bundle/main/source/build/src/release/linux/5.8/64/x86/gcc/9/mpi/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string, std::allocator > const&)+0x103) [0x7f9464c3f5f3] /home/aravinda1879/software/rosetta_bin_linux_2020.50.61505_bundle/main/source/build/src/release/linux/5.8/64/x86/gcc/9/mpi/libutility.so(utility::UtilityExitException::UtilityExitException(char const*, int, std::__cxx11::basic_string, std::allocator > const&)+0x113) [0x7f9464c0a593] /home/aravinda1879/software/rosetta_bin_linux_2020.50.61505_bundle/main/source/build/src/release/linux/5.8/64/x86/gcc/9/mpi/libutility.so(utility::exit(char const*, int, std::__cxx11::basic_string, std::allocator > const&, int)+0x3b) [0x7f9464c0a1ab] /home/aravinda1879/software/rosetta_bin_linux_2020.50.61505_bundle/main/source/build/src/release/linux/5.8/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply(core::pose::Pose&)+0x4f8) [0x7f9465ef1098] /home/aravinda1879/software/rosetta_bin_linux_2020.50.61505_bundle/main/source/build/src/release/linux/5.8/64/x86/gcc/9/mpi/libprotocols.4.so(protocols::monte_carlo::GenericSimulatedAnnealer::apply_mover(core::pose::Pose&)+0x95) [0x7f94623f77b5] /home/aravinda1879/software/rosetta_bin_linux_2020.50.61505_bundle/main/source/build/src/release/linux/5.8/64/x86/gcc/9/mpi/libprotocols.4.so(protocols::monte_carlo::GenericSimulatedAnnealer::apply(core::pose::Pose&)+0x390) [0x7f94623f7f60] /home/aravinda1879/software/rosetta_bin_linux_2020.50.61505_bundle/main/source/build/src/release/linux/5.8/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply_mover(core::pose::Pose&, protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const&)+0x202) [0x7f9465eebe92] /home/aravinda1879/software/rosetta_bin_linux_2020.50.61505_bundle/main/source/build/src/release/linux/5.8/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply_step(core::pose::Pose&, protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const&, bool)+0x21) [0x7f9465eec371] /home/aravinda1879/software/rosetta_bin_linux_2020.50.61505_bundle/main/source/build/src/release/linux/5.8/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::sequence_protocol(core::pose::Pose&, __gnu_cxx::__normal_iterator > >)+0x40) [0x7f9465eeca60] /home/aravinda1879/software/rosetta_bin_linux_2020.50.61505_bundle/main/source/build/src/release/linux/5.8/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::rosetta_scripts::ParsedProtocol::apply(core::pose::Pose&)+0x1fe) [0x7f9465ef0d9e] /home/aravinda1879/software/rosetta_bin_linux_2020.50.61505_bundle/main/source/build/src/release/linux/5.8/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::jd2::JobDistributor::run_one_job(std::shared_ptr&, long, std::__cxx11::basic_string, std::allocator >&, std::__cxx11::basic_string, std::allocator >&, unsigned long&, unsigned long&, bool)+0x2294) [0x7f9465a20ea4] /home/aravinda1879/software/rosetta_bin_linux_2020.50.61505_bundle/main/source/build/src/release/linux/5.8/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::jd2::JobDistributor::go_main(std::shared_ptr)+0x238) [0x7f9465a223e8] /home/aravinda1879/software/rosetta_bin_linux_2020.50.61505_bundle/main/source/build/src/release/linux/5.8/64/x86/gcc/9/mpi/libprotocols.1.so(protocols::jd2::FileSystemJobDistributor::go(std::shared_ptr)+0x57) [0x7f9465a092e7] rosetta_scripts.mpi.linuxgccrelease(+0x4aa6) [0x556149370aa6] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3) [0x7f94646680b3] rosetta_scripts.mpi.linuxgccrelease(+0x4dae) [0x556149370dae] [END_BACKTRACE] [FILE]: src/protocols/rosetta_scripts/ParsedProtocol.cc [LINE]: 169 [START_MESSAGE] [ ERROR ] UtilityExitException ERROR: Assertion `n_steps_passed_in_previous_run_ == steps_.size()` failed. [END_MESSAGE] [END_CRASH_REPORT]