(base) jack@jack-Home:~/PROTAC-pkg/rosetta_src_2021.16.61629_bundle/main/source$ ./scons.py -j3 mode=release bin /home/jack/PROTAC-pkg/rosetta_src_2021.16.61629_bundle/main/source/external/scons-local/scons-local-3.0.4/SCons/Defaults.py:213: SyntaxWarning: "is not" with a literal. Did you mean "!="? if len(operation_list) is not 2: scons: Reading SConscript files ... Copy("user.options", "user.options.template") Copy("user.settings", "user.settings.template") Copy("/home/jack/PROTAC-pkg/rosetta_src_2021.16.61629_bundle/main/source/src/pilot_apps.src.settings", "/home/jack/PROTAC-pkg/rosetta_src_2021.16.61629_bundle/main/source/src/pilot_apps.src.settings.template") Running versioning script ... Release package detected, using rosetta/main/.release.json to acquire version information... Done. (0.0 seconds) file ./options.dox being updated file ./full-options-list.md being updated Number of option files updated: 2 Total 4580 options. Finished updating ResidueProperty code -- no changes needed Finished updating VariantType code -- no changes needed scons: done reading SConscript files. scons: Building targets ... g++ -o build/src/release/linux/5.15/64/x86/gcc/11/default/apps/public/AbinitioRelax.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/11 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux src/apps/public/AbinitioRelax.cc g++: warning: switch '-ffor-scope' is no longer supported g++ -o build/src/release/linux/5.15/64/x86/gcc/11/default/devel/init.os -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/11 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux src/devel/init.cc g++: warning: switch '-ffor-scope' is no longer supported g++ -o build/src/release/linux/5.15/64/x86/gcc/11/default/protocols/init/init.os -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/11 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux src/protocols/init/init.cc g++: warning: switch '-ffor-scope' is no longer supported g++ -o build/src/release/linux/5.15/64/x86/gcc/11/default/protocols/init/register1.os -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/11 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux src/protocols/init/register1.cc g++: warning: switch '-ffor-scope' is no longer supported g++ -o build/src/release/linux/5.15/64/x86/gcc/11/default/protocols/init/register2.os -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/11 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux src/protocols/init/register2.cc g++: warning: switch '-ffor-scope' is no longer supported g++ -o build/src/release/linux/5.15/64/x86/gcc/11/default/protocols/init/register3.os -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/11 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux src/protocols/init/register3.cc g++: warning: switch '-ffor-scope' is no longer supported g++ -o build/src/release/linux/5.15/64/x86/gcc/11/default/protocols/init/register4.os -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/11 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux src/protocols/init/register4.cc g++: warning: switch '-ffor-scope' is no longer supported g++ -o build/src/release/linux/5.15/64/x86/gcc/11/default/protocols/antibody_legacy/AntibodyClass.os -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/11 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux src/protocols/antibody_legacy/AntibodyClass.cc g++: warning: switch '-ffor-scope' is no longer supported g++ -o build/src/release/linux/5.15/64/x86/gcc/11/default/protocols/antibody_legacy/AntibodyModeler.os -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/11 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux src/protocols/antibody_legacy/AntibodyModeler.cc g++: warning: switch '-ffor-scope' is no longer supported g++ -o build/src/release/linux/5.15/64/x86/gcc/11/default/protocols/antibody_legacy/CDRH3Modeler.os -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/11 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux src/protocols/antibody_legacy/CDRH3Modeler.cc g++: warning: switch '-ffor-scope' is no longer supported g++ -o build/src/release/linux/5.15/64/x86/gcc/11/default/protocols/antibody_legacy/LHRepulsiveRampLegacy.os -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/11 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux src/protocols/antibody_legacy/LHRepulsiveRampLegacy.cc g++: warning: switch '-ffor-scope' is no longer supported g++ -o build/src/release/linux/5.15/64/x86/gcc/11/default/protocols/antibody_legacy/LHSnugFitLegacy.os -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/11 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux src/protocols/antibody_legacy/LHSnugFitLegacy.cc g++: warning: switch '-ffor-scope' is no longer supported g++ -o build/src/release/linux/5.15/64/x86/gcc/11/default/protocols/antibody_legacy/GraftMover.os -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/11 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux src/protocols/antibody_legacy/GraftMover.cc g++: warning: switch '-ffor-scope' is no longer supported g++ -o build/src/release/linux/5.15/64/x86/gcc/11/default/protocols/antibody_legacy/Ubiquitin_E2C_Modeler.os -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/11 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux src/protocols/antibody_legacy/Ubiquitin_E2C_Modeler.cc g++: warning: switch '-ffor-scope' is no longer supported g++ -o build/src/release/linux/5.15/64/x86/gcc/11/default/protocols/antibody/Ab_TemplateInfo.os -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/11 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux src/protocols/antibody/Ab_TemplateInfo.cc g++: warning: switch '-ffor-scope' is no longer supported g++ -o build/src/release/linux/5.15/64/x86/gcc/11/default/protocols/antibody/AntibodyCDRGrafter.os -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/11 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux src/protocols/antibody/AntibodyCDRGrafter.cc g++: warning: switch '-ffor-scope' is no longer supported g++ -o build/src/release/linux/5.15/64/x86/gcc/11/default/protocols/antibody/AntibodyEnumManager.os -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/11 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux src/protocols/antibody/AntibodyEnumManager.cc g++: warning: switch '-ffor-scope' is no longer supported g++ -o build/src/release/linux/5.15/64/x86/gcc/11/default/protocols/antibody/AntibodyInfo.os -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/11 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux src/protocols/antibody/AntibodyInfo.cc g++: warning: switch '-ffor-scope' is no longer supported g++ -o build/src/release/linux/5.15/64/x86/gcc/11/default/protocols/antibody/AntibodyFeatures.os -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/11 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux src/protocols/antibody/AntibodyFeatures.cc g++: warning: switch '-ffor-scope' is no longer supported g++ -o build/src/release/linux/5.15/64/x86/gcc/11/default/protocols/antibody/AntibodyFeaturesCreator.os -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/11 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux src/protocols/antibody/AntibodyFeaturesCreator.cc g++: warning: switch '-ffor-scope' is no longer supported In file included from src/protocols/features/FeaturesReporterCreator.hh:21, from src/protocols/antibody/AntibodyFeaturesCreator.hh:18, from src/protocols/antibody/AntibodyFeaturesCreator.cc:15: src/protocols/features/FeaturesReporter.fwd.hh:27:14: error: 'uint64_t' in namespace 'std' does not name a type; did you mean 'wint_t'? 27 | typedef std::uint64_t StructureID; | ^~~~~~~~ | wint_t In file included from src/protocols/features/FeaturesReporter.hh:19, from src/protocols/features/InterfaceFeatures.hh:18, from src/protocols/antibody/AntibodyFeatures.hh:18, from src/protocols/antibody/AntibodyFeatures.cc:14: src/protocols/features/FeaturesReporter.fwd.hh:27:14: error: 'uint64_t' in namespace 'std' does not name a type; did you mean 'wint_t'? 27 | typedef std::uint64_t StructureID; | ^~~~~~~~ | wint_t In file included from src/protocols/features/InterfaceFeatures.hh:18, from src/protocols/antibody/AntibodyFeatures.hh:18, from src/protocols/antibody/AntibodyFeaturesCreator.cc:21: src/protocols/features/FeaturesReporter.hh:99:17: error: 'StructureID' has not been declared 99 | StructureID /*parent id*/, | ^~~~~~~~~~~ src/protocols/features/FeaturesReporter.hh:109:17: error: 'StructureID' has not been declared 109 | StructureID /*parent id*/, | ^~~~~~~~~~~ src/protocols/features/FeaturesReporter.hh:124:17: error: 'StructureID' has not been declared 124 | StructureID, | ^~~~~~~~~~~ src/protocols/features/FeaturesReporter.hh:130:17: error: 'StructureID' has not been declared 130 | StructureID, | ^~~~~~~~~~~ In file included from src/protocols/features/InterfaceFeatures.hh:18, from src/protocols/antibody/AntibodyFeatures.hh:18, from src/protocols/antibody/AntibodyFeaturesCreator.cc:21: src/protocols/features/FeaturesReporter.hh:185:17: error: 'StructureID' has not been declared 185 | StructureID struct_id, | ^~~~~~~~~~~ In file included from src/protocols/features/InterfaceFeatures.hh:18, from src/protocols/antibody/AntibodyFeatures.hh:18, from src/protocols/antibody/AntibodyFeatures.cc:14: src/protocols/features/FeaturesReporter.hh:99:17: error: 'StructureID' has not been declared 99 | StructureID /*parent id*/, | ^~~~~~~~~~~ src/protocols/features/FeaturesReporter.hh:109:17: error: 'StructureID' has not been declared 109 | StructureID /*parent id*/, | ^~~~~~~~~~~ src/protocols/features/FeaturesReporter.hh:124:17: error: 'StructureID' has not been declared 124 | StructureID, | ^~~~~~~~~~~ src/protocols/features/FeaturesReporter.hh:130:17: error: 'StructureID' has not been declared 130 | StructureID, | ^~~~~~~~~~~ In file included from src/protocols/features/InterfaceFeatures.hh:18, from src/protocols/antibody/AntibodyFeatures.hh:18, from src/protocols/antibody/AntibodyFeatures.cc:14: src/protocols/features/FeaturesReporter.hh:185:17: error: 'StructureID' has not been declared 185 | StructureID struct_id, | ^~~~~~~~~~~ In file included from src/protocols/antibody/AntibodyFeatures.hh:18, from src/protocols/antibody/AntibodyFeaturesCreator.cc:21: src/protocols/features/InterfaceFeatures.hh:71:17: error: 'StructureID' has not been declared 71 | StructureID struct_id, | ^~~~~~~~~~~ src/protocols/features/InterfaceFeatures.hh:126:17: error: 'StructureID' has not been declared 126 | StructureID struct_id, | ^~~~~~~~~~~ src/protocols/features/InterfaceFeatures.hh:135:17: error: 'StructureID' has not been declared 135 | StructureID struct_id, | ^~~~~~~~~~~ src/protocols/features/InterfaceFeatures.hh:144:17: error: 'StructureID' has not been declared 144 | StructureID struct_id, | ^~~~~~~~~~~ src/protocols/features/InterfaceFeatures.hh:156:17: error: 'StructureID' has not been declared 156 | StructureID struct_id, | ^~~~~~~~~~~ src/protocols/features/InterfaceFeatures.hh:181:17: error: 'StructureID' has not been declared 181 | StructureID struct_id, | ^~~~~~~~~~~ In file included from src/protocols/antibody/AntibodyFeatures.hh:18, from src/protocols/antibody/AntibodyFeatures.cc:14: src/protocols/features/InterfaceFeatures.hh:71:17: error: 'StructureID' has not been declared 71 | StructureID struct_id, | ^~~~~~~~~~~ src/protocols/features/InterfaceFeatures.hh:126:17: error: 'StructureID' has not been declared 126 | StructureID struct_id, | ^~~~~~~~~~~ src/protocols/features/InterfaceFeatures.hh:135:17: error: 'StructureID' has not been declared 135 | StructureID struct_id, | ^~~~~~~~~~~ src/protocols/features/InterfaceFeatures.hh:144:17: error: 'StructureID' has not been declared 144 | StructureID struct_id, | ^~~~~~~~~~~ src/protocols/features/InterfaceFeatures.hh:156:17: error: 'StructureID' has not been declared 156 | StructureID struct_id, | ^~~~~~~~~~~ src/protocols/features/InterfaceFeatures.hh:181:17: error: 'StructureID' has not been declared 181 | StructureID struct_id, | ^~~~~~~~~~~ In file included from src/protocols/antibody/AntibodyFeaturesCreator.cc:21: src/protocols/antibody/AntibodyFeatures.hh:84:27: error: 'protocols::features::StructureID' has not been declared 84 | features::StructureID struct_id, | ^~~~~~~~~~~ src/protocols/antibody/AntibodyFeatures.hh:92:27: error: 'protocols::features::StructureID' has not been declared 92 | features::StructureID struct_id, | ^~~~~~~~~~~ src/protocols/antibody/AntibodyFeatures.hh:98:27: error: 'protocols::features::StructureID' has not been declared 98 | features::StructureID struct_id, | ^~~~~~~~~~~ src/protocols/antibody/AntibodyFeatures.hh:104:27: error: 'protocols::features::StructureID' has not been declared 104 | features::StructureID struct_id, | ^~~~~~~~~~~ src/protocols/antibody/AntibodyFeatures.hh:111:27: error: 'protocols::features::StructureID' has not been declared 111 | features::StructureID struct_id, | ^~~~~~~~~~~ src/protocols/antibody/AntibodyFeatures.hh:119:27: error: 'protocols::features::StructureID' has not been declared 119 | features::StructureID struct_id, | ^~~~~~~~~~~ In file included from src/protocols/antibody/AntibodyFeatures.cc:14: src/protocols/antibody/AntibodyFeatures.hh:84:27: error: 'protocols::features::StructureID' has not been declared 84 | features::StructureID struct_id, | ^~~~~~~~~~~ src/protocols/antibody/AntibodyFeatures.hh:92:27: error: 'protocols::features::StructureID' has not been declared 92 | features::StructureID struct_id, | ^~~~~~~~~~~ src/protocols/antibody/AntibodyFeatures.hh:98:27: error: 'protocols::features::StructureID' has not been declared 98 | features::StructureID struct_id, | ^~~~~~~~~~~ src/protocols/antibody/AntibodyFeatures.hh:104:27: error: 'protocols::features::StructureID' has not been declared 104 | features::StructureID struct_id, | ^~~~~~~~~~~ src/protocols/antibody/AntibodyFeatures.hh:111:27: error: 'protocols::features::StructureID' has not been declared 111 | features::StructureID struct_id, | ^~~~~~~~~~~ src/protocols/antibody/AntibodyFeatures.hh:119:27: error: 'protocols::features::StructureID' has not been declared 119 | features::StructureID struct_id, | ^~~~~~~~~~~ scons: *** [build/src/release/linux/5.15/64/x86/gcc/11/default/protocols/antibody/AntibodyFeaturesCreator.os] Error 1 In file included from src/protocols/antibody/AntibodyFeatures.cc:30: src/protocols/features/util.hh:79:9: error: 'StructureID' was not declared in this scope 79 | StructureID struct_id, | ^~~~~~~~~~~ src/protocols/features/util.hh:80:42: error: expected primary-expression before 'db_session' 80 | utility::sql_database::sessionOP db_session | ^~~~~~~~~~ src/protocols/features/util.hh:81:1: error: expression list treated as compound expression in initializer [-fpermissive] 81 | ); | ^ src/protocols/features/util.hh:83:18: error: 'StructureID' was not declared in this scope 83 | utility::vector1 | ^~~~~~~~~~~ src/protocols/features/util.hh:83:29: error: template argument 1 is invalid 83 | utility::vector1 | ^ src/protocols/features/util.hh:83:29: error: template argument 2 is invalid src/protocols/antibody/AntibodyFeatures.cc:118:9: error: 'StructureID' has not been declared 118 | StructureID struct_id, | ^~~~~~~~~~~ src/protocols/antibody/AntibodyFeatures.cc:321:9: error: 'StructureID' has not been declared 321 | StructureID struct_id, | ^~~~~~~~~~~ src/protocols/antibody/AntibodyFeatures.cc:443:9: error: 'StructureID' has not been declared 443 | StructureID struct_id, | ^~~~~~~~~~~ src/protocols/antibody/AntibodyFeatures.cc:540:9: error: 'StructureID' has not been declared 540 | StructureID struct_id, | ^~~~~~~~~~~ src/protocols/antibody/AntibodyFeatures.cc:557:9: error: 'StructureID' has not been declared 557 | StructureID struct_id, | ^~~~~~~~~~~ src/protocols/antibody/AntibodyFeatures.cc:623:9: error: 'StructureID' has not been declared 623 | StructureID struct_id, | ^~~~~~~~~~~ scons: *** [build/src/release/linux/5.15/64/x86/gcc/11/default/protocols/antibody/AntibodyFeatures.os] Error 1 scons: building terminated because of errors.