{\rtf1\ansi\ansicpg1252\cocoartf2513 \cocoatextscaling0\cocoaplatform0{\fonttbl\f0\fnil\fcharset0 Menlo-Regular;\f1\fswiss\fcharset0 Helvetica;} {\colortbl;\red255\green255\blue255;\red0\green0\blue0;} {\*\expandedcolortbl;;\csgray\c0;} \margl1440\margr1440\vieww14200\viewh16580\viewkind0 \pard\tx560\tx1120\tx1680\tx2240\tx2800\tx3360\tx3920\tx4480\tx5040\tx5600\tx6160\tx6720\pardirnatural\partightenfactor0 \f0\fs22 \cf2 \CocoaLigature0 The default interactive shell is now zsh.\ To update your account to use zsh, please run `chsh -s /bin/zsh`.\ For more details, please visit https://support.apple.com/kb/HT208050.\ \pard\tx720\tx1440\tx2160\tx2880\tx3600\tx4320\tx5040\tx5760\tx6480\tx7200\tx7920\tx8640\pardirnatural\partightenfactor0 \f1\fs24 \cf0 \CocoaLigature1 \ \pard\tx560\tx1120\tx1680\tx2240\tx2800\tx3360\tx3920\tx4480\tx5040\tx5600\tx6160\tx6720\pardirnatural\partightenfactor0 \f0\fs22 \cf2 \CocoaLigature0 (base) Johnnys-MBP:source johnny$ ./scons.py -j 2 bin\ scons: Reading SConscript files ...\ Running versioning script ... Release package detected, using rosetta/main/.release.json to acquire version information...\ Done. (0.0 seconds)\ Number of option files updated: 0\ Total 4176 options.\ Finished updating ResidueProperty code -- no changes needed\ Finished updating VariantType code -- no changes needed\ scons: done reading SConscript files.\ scons: Building targets ...\ clang++ -o build/src/release/macos/19.6/64/x86/clang/11.0/default/protocols/antibody/database/CDRSetOptionsParser.os -c -std=c++11 -isystem external/boost_1_55_0/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -O3 -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DPTR_STD -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/11.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos -Iexternal/boost_1_55_0 -Iexternal/libxml2/include -Iexternal -Iexternal/dbio -I/usr/include -I/usr/local/include src/protocols/antibody/database/CDRSetOptionsParser.cc\ clang++ -o build/src/release/macos/19.6/64/x86/clang/11.0/default/protocols/sic_dock/SICFast.os -c -std=c++11 -isystem external/boost_1_55_0/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -O3 -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DPTR_STD -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/11.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos -Iexternal/boost_1_55_0 -Iexternal/libxml2/include -Iexternal -Iexternal/dbio -I/usr/include -I/usr/local/include src/protocols/sic_dock/SICFast.cc\ src/protocols/antibody/database/CDRSetOptionsParser.cc:81:8: error: reference to 'core' is ambiguous\ for ( core::Size i = 1; i <= core::Size(CDRNameEnum_proto_total); ++i ) \{\ ^\ src/core/types.hh:32:11: note: candidate found by name lookup is 'core'\ namespace core \{\ ^\ /usr/local/include/boost/core/demangle.hpp:47:11: note: candidate found by name lookup is 'boost::core'\ namespace core\ ^\ src/protocols/antibody/database/CDRSetOptionsParser.cc:81:31: error: reference to 'core' is ambiguous\ for ( core::Size i = 1; i <= core::Size(CDRNameEnum_proto_total); ++i ) \{\ ^\ src/core/types.hh:32:11: note: candidate found by name lookup is 'core'\ namespace core \{\ ^\ /usr/local/include/boost/core/demangle.hpp:47:11: note: candidate found by name lookup is 'boost::core'\ namespace core\ ^\ src/protocols/antibody/database/CDRSetOptionsParser.cc:104:8: error: reference to 'core' is ambiguous\ for ( core::Size i = 1; i <= core::Size(CDRNameEnum_proto_total); ++i ) \{\ ^\ src/core/types.hh:32:11: note: candidate found by name lookup is 'core'\ namespace core \{\ ^\ /usr/local/include/boost/core/demangle.hpp:47:11: note: candidate found by name lookup is 'boost::core'\ namespace core\ ^\ src/protocols/antibody/database/CDRSetOptionsParser.cc:104:31: error: reference to 'core' is ambiguous\ for ( core::Size i = 1; i <= core::Size(CDRNameEnum_proto_total); ++i ) \{\ ^\ src/core/types.hh:32:11: note: candidate found by name lookup is 'core'\ namespace core \{\ ^\ /usr/local/include/boost/core/demangle.hpp:47:11: note: candidate found by name lookup is 'boost::core'\ namespace core\ ^\ 4 errors generated.\ scons: *** [build/src/release/macos/19.6/64/x86/clang/11.0/default/protocols/antibody/database/CDRSetOptionsParser.os] Error 1\ In file included from src/protocols/sic_dock/SICFast.cc:28:\ In file included from src/core/pose/util.hh:20:\ In file included from src/core/pose/util.tmpl.hh:31:\ In file included from src/core/conformation/Conformation.hh:21:\ In file included from src/core/conformation/Residue.hh:30:\ In file included from src/core/chemical/Orbital.hh:30:\ In file included from src/core/chemical/orbitals/ICoorOrbitalData.hh:48:\ In file included from src/core/chemical/ResidueGraphTypes.hh:37:\ In file included from /usr/local/include/boost/graph/undirected_graph.hpp:10:\ In file included from /usr/local/include/boost/graph/adjacency_list.hpp:255:\ In file included from /usr/local/include/boost/graph/detail/adjacency_list.hpp:37:\ In file included from /usr/local/include/boost/graph/adjacency_iterator.hpp:13:\ /usr/local/include/boost/detail/iterator.hpp:13:1: warning: This header is deprecated. Use instead. [-W#pragma-messages]\ BOOST_HEADER_DEPRECATED("")\ ^\ /usr/local/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED'\ # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.")\ ^\ /usr/local/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE'\ # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x)))\ ^\ :108:2: note: expanded from here\ message("This header is deprecated. Use " "" " instead.")\ ^\ In file included from src/protocols/sic_dock/SICFast.cc:28:\ In file included from src/core/pose/util.hh:20:\ In file included from src/core/pose/util.tmpl.hh:31:\ In file included from src/core/conformation/Conformation.hh:21:\ In file included from src/core/conformation/Residue.hh:35:\ In file included from src/core/chemical/ResidueType.hh:75:\ In file included from src/utility/signals/BufferedSignalHub.hh:29:\ In file included from src/utility/signals/SignalHub.hh:30:\ /usr/local/include/boost/bind.hpp:36:1: warning: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use\ + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior. [-W#pragma-messages]\ BOOST_PRAGMA_MESSAGE(\ ^\ /usr/local/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE'\ # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x)))\ ^\ :152:2: note: expanded from here\ message("The practice of declaring the Bind placeholders (_1, _2, ...) " "in the global namespace is deprecated. Please use " " + usi...\ ^\ 2 warnings generated.\ scons: building terminated because of errors.\ (base) Johnnys-MBP:source johnny$ }