lanselibai@ubuntu:~/Cheng/rosetta_2014.30.57114_bundle/main/source/bin$ ls
AbinitioRelax.default.linuxgccrelease                              minirosetta.linuxgccrelease
AbinitioRelax.linuxgccrelease                                      mpi_msd.default.linuxgccrelease
AnchoredDesign.default.linuxgccrelease                             mpi_msd.linuxgccrelease
AnchoredDesign.linuxgccrelease                                     mr_protocols.default.linuxgccrelease
AnchoredPDBCreator.default.linuxgccrelease                         mr_protocols.linuxgccrelease
AnchoredPDBCreator.linuxgccrelease                                 oop_design.default.linuxgccrelease
AnchorFinder.default.linuxgccrelease                               oop_design.linuxgccrelease
AnchorFinder.linuxgccrelease                                       optE_parallel.default.linuxgccrelease
antibody_graft.default.linuxgccrelease                             optE_parallel.linuxgccrelease
antibody_graft.linuxgccrelease                                     packstat.default.linuxgccrelease
antibody_H3.default.linuxgccrelease                                packstat.linuxgccrelease
antibody_H3.linuxgccrelease                                        partial_thread.default.linuxgccrelease
antibody_legacy.default.linuxgccrelease                            partial_thread.linuxgccrelease
antibody_legacy.linuxgccrelease                                    pepspec_anchor_dock.default.linuxgccrelease
backrub.default.linuxgccrelease                                    pepspec_anchor_dock.linuxgccrelease
backrub.linuxgccrelease                                            pepspec.default.linuxgccrelease
beta_peptide_modeling.default.linuxgccrelease                      pepspec.linuxgccrelease
beta_peptide_modeling.linuxgccrelease                              peptoid_design.default.linuxgccrelease
BuildPeptide.default.linuxgccrelease                               peptoid_design.linuxgccrelease
BuildPeptide.linuxgccrelease                                       performance_benchmark.default.linuxgccrelease
ca_to_allatom.default.linuxgccrelease                              performance_benchmark.linuxgccrelease
ca_to_allatom.linuxgccrelease                                      per_residue_energies.default.linuxgccrelease
cluster_alns.default.linuxgccrelease                               per_residue_energies.linuxgccrelease
cluster_alns.linuxgccrelease                                       pmut_scan_parallel.default.linuxgccrelease
cluster.default.linuxgccrelease                                    pmut_scan_parallel.linuxgccrelease
cluster.linuxgccrelease                                            pocket_measure.default.linuxgccrelease
combine_silent.default.linuxgccrelease                             pocket_measure.linuxgccrelease
combine_silent.linuxgccrelease                                     relax.default.linuxgccrelease
contactMap.default.linuxgccrelease                                 relax.linuxgccrelease
contactMap.linuxgccrelease                                         remodel.default.linuxgccrelease
CstfileToTheozymePDB.default.linuxgccrelease                       remodel.linuxgccrelease
CstfileToTheozymePDB.linuxgccrelease                               residue_energy_breakdown.default.linuxgccrelease
DARC.default.linuxgccrelease                                       residue_energy_breakdown.linuxgccrelease
DARC.linuxgccrelease                                               revert_design_to_native.default.linuxgccrelease
ddg_benchmark.default.linuxgccrelease                              revert_design_to_native.linuxgccrelease
ddg_benchmark.linuxgccrelease                                      rna_cluster.default.linuxgccrelease
ddg_monomer.default.linuxgccrelease                                rna_cluster.linuxgccrelease
ddg_monomer.linuxgccrelease                                        rna_database.default.linuxgccrelease
design_contrast_and_statistic.default.linuxgccrelease              rna_database.linuxgccrelease
design_contrast_and_statistic.linuxgccrelease                      rna_denovo.default.linuxgccrelease
docking_prepack_protocol.default.linuxgccrelease                   rna_denovo.linuxgccrelease
docking_prepack_protocol.linuxgccrelease                           rna_design.default.linuxgccrelease
docking_protocol.default.linuxgccrelease                           rna_design.linuxgccrelease
docking_protocol.linuxgccrelease                                   rna_extract.default.linuxgccrelease
doug_dock_design_min_mod2_cal_cal.default.linuxgccrelease          rna_extract.linuxgccrelease
doug_dock_design_min_mod2_cal_cal.linuxgccrelease                  rna_features.default.linuxgccrelease
ensemble_analysis.default.linuxgccrelease                          rna_features.linuxgccrelease
ensemble_analysis.linuxgccrelease                                  rna_graft.default.linuxgccrelease
ensemble_generator_score12_sidechain_ver2.default.linuxgccrelease  rna_graft.linuxgccrelease
ensemble_generator_score12_sidechain_ver2.linuxgccrelease          rna_helix.default.linuxgccrelease
enzyme_design.default.linuxgccrelease                              rna_helix.linuxgccrelease
enzyme_design.linuxgccrelease                                      rna_minimize.default.linuxgccrelease
erraser_minimizer.default.linuxgccrelease                          rna_minimize.linuxgccrelease
erraser_minimizer.linuxgccrelease                                  rna_predict_chem_map.default.linuxgccrelease
exposed_strand_finder.default.linuxgccrelease                      rna_predict_chem_map.linuxgccrelease
exposed_strand_finder.linuxgccrelease                              rna_score.default.linuxgccrelease
extract_atomtree_diffs.default.linuxgccrelease                     rna_score.linuxgccrelease
extract_atomtree_diffs.linuxgccrelease                             rna_suitename.default.linuxgccrelease
extract_motifs.default.linuxgccrelease                             rna_suitename.linuxgccrelease
extract_motifs.linuxgccrelease                                     rna_thread.default.linuxgccrelease
extract_pdbs.default.linuxgccrelease                               rna_thread.linuxgccrelease
extract_pdbs.linuxgccrelease                                       r_noe_assign.default.linuxgccrelease
fast_clustering.default.linuxgccrelease                            r_noe_assign.linuxgccrelease
fast_clustering.linuxgccrelease                                    rosettaDNA.default.linuxgccrelease
fix_alignment_to_match_pdb.default.linuxgccrelease                 rosettaDNA.linuxgccrelease
fix_alignment_to_match_pdb.linuxgccrelease                         rosetta_scripts.default.linuxgccrelease
fixbb.default.linuxgccrelease                                      rosetta_scripts.linuxgccrelease
fixbb.linuxgccrelease                                              rotamer_recovery.default.linuxgccrelease
FlexPepDocking.default.linuxgccrelease                             rotamer_recovery.linuxgccrelease
FlexPepDocking.linuxgccrelease                                     score_aln2.default.linuxgccrelease
FloppyTail.default.linuxgccrelease                                 score_aln2.linuxgccrelease
FloppyTail.linuxgccrelease                                         score_aln.default.linuxgccrelease
fragment_picker.default.linuxgccrelease                            score_aln.linuxgccrelease
fragment_picker.linuxgccrelease                                    score.default.linuxgccrelease
full_length_model.default.linuxgccrelease                          score_jd2.default.linuxgccrelease
full_length_model.linuxgccrelease                                  score_jd2.linuxgccrelease
gen_apo_grids.default.linuxgccrelease                              score.linuxgccrelease
gen_apo_grids.linuxgccrelease                                      select_best_unique_ligand_poses.default.linuxgccrelease
gen_lig_grids.default.linuxgccrelease                              select_best_unique_ligand_poses.linuxgccrelease
gen_lig_grids.linuxgccrelease                                      sequence_recovery.default.linuxgccrelease
hbs_design.default.linuxgccrelease                                 sequence_recovery.linuxgccrelease
hbs_design.linuxgccrelease                                         sequence_tolerance.default.linuxgccrelease
homodimer_design.default.linuxgccrelease                           sequence_tolerance.linuxgccrelease
homodimer_design.linuxgccrelease                                   stepwise.default.linuxgccrelease
homodimer_maker.default.linuxgccrelease                            stepwise.linuxgccrelease
homodimer_maker.linuxgccrelease                                    super_aln.default.linuxgccrelease
idealize_jd2.default.linuxgccrelease                               super_aln.linuxgccrelease
idealize_jd2.linuxgccrelease                                       supercharge.default.linuxgccrelease
incorporate_motifs.default.linuxgccrelease                         supercharge.linuxgccrelease
incorporate_motifs.linuxgccrelease                                 surface_docking.default.linuxgccrelease
InterfaceAnalyzer.default.linuxgccrelease                          surface_docking.linuxgccrelease
InterfaceAnalyzer.linuxgccrelease                                  swa_protein_main.default.linuxgccrelease
ligand_dock.default.linuxgccrelease                                swa_protein_main.linuxgccrelease
ligand_dock.linuxgccrelease                                        swa_rna_main.default.linuxgccrelease
ligand_rpkmin.default.linuxgccrelease                              swa_rna_main.linuxgccrelease
ligand_rpkmin.linuxgccrelease                                      swa_rna_util.default.linuxgccrelease
loopmodel.default.linuxgccrelease                                  swa_rna_util.linuxgccrelease
loopmodel.linuxgccrelease                                          SymDock.default.linuxgccrelease
loops_from_density.default.linuxgccrelease                         SymDock.linuxgccrelease
loops_from_density.linuxgccrelease                                 UBQ_E2_thioester.default.linuxgccrelease
make_exemplar.default.linuxgccrelease                              UBQ_E2_thioester.linuxgccrelease
make_exemplar.linuxgccrelease                                      UBQ_Gp_CYD-CYD.default.linuxgccrelease
make_ray_files.default.linuxgccrelease                             UBQ_Gp_CYD-CYD.linuxgccrelease
make_ray_files.linuxgccrelease                                     UBQ_Gp_LYX-Cterm.default.linuxgccrelease
MakeRotLib.default.linuxgccrelease                                 UBQ_Gp_LYX-Cterm.linuxgccrelease
MakeRotLib.linuxgccrelease                                         UnfoldedStateEnergyCalculator.default.linuxgccrelease
match.default.linuxgccrelease                                      UnfoldedStateEnergyCalculator.linuxgccrelease
match.linuxgccrelease                                              validate_silent.default.linuxgccrelease
membrane_abinitio2.default.linuxgccrelease                         validate_silent.linuxgccrelease
membrane_abinitio2.linuxgccrelease                                 vip.default.linuxgccrelease
minimize.default.linuxgccrelease                                   vip.linuxgccrelease
minimize.linuxgccrelease                                           zinc2_homodimer_design.default.linuxgccrelease
minimize_with_cst.default.linuxgccrelease                          zinc2_homodimer_design.linuxgccrelease
minimize_with_cst.linuxgccrelease                                  zinc2_homodimer_setup.default.linuxgccrelease
minirosetta.default.linuxgccrelease                                zinc2_homodimer_setup.linuxgccrelease
minirosetta_graphics.default.linuxgccrelease                       zinc_heterodimer_design.default.linuxgccrelease
minirosetta_graphics.linuxgccrelease                               zinc_heterodimer_design.linuxgccrelease