core.init: Checking for fconfig files in pwd and ./rosetta/flags core.init: Rosetta version: rosetta.source.release-217 r217 2019.14+release.dfe4ffc dfe4ffc992818823029b241b83f5929be37b0392 https://www.rosettacommons.org 2019-04-07T03:12:09.988768 core.init: command: ~/Rosetta/rosetta_src_2019.14.60699_bundle/main/source/bin/loopmodel.default.linuxgccrelease @chainbreak_fix.options -nstruct 10 core.init: 'RNG device' seed mode, using '/dev/urandom', seed=-759543575 seed_offset=0 real_seed=-759543575 core.init.random: RandomGenerator:init: Normal mode, seed=-759543575 RG_type=mt19937 core.init: Resolved executable path: ~/Rosetta/rosetta_src_2019.14.60699_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/4.8/default/loopmodel.default.linuxgccrelease core.init: Looking for database based on location of executable: ~/Rosetta/rosetta_src_2019.14.60699_bundle/main/database/ protocols.loop_build.LoopBuild: ==== Loop protocol: ================================================= protocols.loop_build.LoopBuild: remodel perturb_kic protocols.loop_build.LoopBuild: intermedrelax no protocols.loop_build.LoopBuild: refine refine_kic protocols.loop_build.LoopBuild: relax no basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/env_log.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cbeta_den.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/pair_log.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cenpack_log.txt basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/HBPoly1D.csv basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/HBFadeIntervals.csv basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/HBEval.csv basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/DonStrength.csv basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/AccStrength.csv core.scoring.ramachandran: shapovalov_lib::shap_rama_smooth_level of 4( aka highest_smooth ) got activated. basic.io.database: Database file opened: scoring/score_functions/rama/shapovalov/kappa25/all.ramaProb core.scoring.ScoreFunctionFactory: SCOREFUNCTION: talaris2014.wts ERROR: talaris2014(.wts) requested, but -corrections::restore_talaris_behavior not set to true. This leads to a garbage scorefunction. Exiting. ERROR:: Exit from: src/core/scoring/ScoreFunctionFactory.cc line: 157 BACKTRACE: ~/Rosetta/rosetta_src_2019.14.60699_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/4.8/default/libutility.so(utility::exit(char const*, int, std::string const&, int)+0x229) [0x7fc74bd07299] ~/Rosetta/rosetta_src_2019.14.60699_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/4.8/default/libcore.3.so(core::scoring::ScoreFunctionFactory::validate_talaris(std::string const&, utility::options::OptionCollection const&)+0x1f4) [0x7fc74e69e684] ~/Rosetta/rosetta_src_2019.14.60699_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/4.8/default/libcore.3.so(core::scoring::ScoreFunctionFactory::create_score_function(utility::options::OptionCollection const&, std::string const&, utility::vector1 > const&)+0x1cd) [0x7fc74e6a077d] ~/Rosetta/rosetta_src_2019.14.60699_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/4.8/default/libcore.3.so(core::scoring::ScoreFunctionFactory::create_score_function(std::string const&, utility::vector1 > const&)+0x16) [0x7fc74e6a0fc6] ~/Rosetta/rosetta_src_2019.14.60699_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/4.8/default/libcore.3.so(core::scoring::get_score_function(utility::options::OptionCollection const&, bool)+0x5b2) [0x7fc74e6a1582] ~/Rosetta/rosetta_src_2019.14.60699_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/4.8/default/libcore.3.so(core::scoring::get_score_function(bool)+0x14) [0x7fc74e6a1d94] ~/Rosetta/rosetta_src_2019.14.60699_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/4.8/default/libprotocols.3.so(protocols::loops::get_fa_scorefxn()+0xe) [0x7fc752910f1e] ~/Rosetta/rosetta_src_2019.14.60699_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/4.8/default/libprotocols_g.5.so(protocols::comparative_modeling::LoopRelaxMover::set_defaults_()+0x2fc) [0x7fc7560d176c] ~/Rosetta/rosetta_src_2019.14.60699_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/4.8/default/libprotocols_g.5.so(protocols::comparative_modeling::LoopRelaxMover::LoopRelaxMover()+0x122) [0x7fc7560d2ce2] ~/Rosetta/rosetta_src_2019.14.60699_bundle/main/source/build/src/release/linux/4.4/64/x86/gcc/4.8/default/libprotocols_b.6.so(protocols::loop_build::LoopBuild_main(bool)+0x316) [0x7fc757ae6cc6] ~/Rosetta/rosetta_src_2019.14.60699_bundle/main/source/bin/loopmodel.default.linuxgccrelease() [0x401b25] /lib64/libc.so.6(__libc_start_main+0xf5) [0x7fc749bc1725] ~/Rosetta/rosetta_src_2019.14.60699_bundle/main/source/bin/loopmodel.default.linuxgccrelease() [0x401d49] caught exception File: src/core/scoring/ScoreFunctionFactory.cc:157 [ ERROR ] UtilityExitException ERROR: talaris2014(.wts) requested, but -corrections::restore_talaris_behavior not set to true. This leads to a garbage scorefunction. Exiting.