core.init: Rosetta version exported  from http://www.rosettacommons.org
core.init: command: /home/dancebean/Cheng/rosetta_2014.30.57114_bundle/main/source/bin/minirosetta.linuxgccrelease @/mnt/hgfs/Cheng/comparative/comparative_model.options -database /home/dancebean/Cheng/rosetta_2014.30.57114_bundle/main/database
core.init: 'RNG device' seed mode, using '/dev/urandom', seed=314022233 seed_offset=0 real_seed=314022233
core.init.random: RandomGenerator:init: Normal mode, seed=314022233 RG_type=mt19937
protocols.loops.loops_main: Frag libraries debug /mnt/hgfs/Cheng/comparative/aaC226S_HC09_05.200_v1_3 9
core.io.fragments: reading fragments from file: /mnt/hgfs/Cheng/comparative/aaC226S_HC09_05.200_v1_3 ... 
core.io.fragments: rosetta++ fileformat detected! Calling legacy reader... 
core.fragments.ConstantLengthFragSet: finished reading top 200 9mer fragments from file /mnt/hgfs/Cheng/comparative/aaC226S_HC09_05.200_v1_3
protocols.loops.loops_main: Frag libraries debug /mnt/hgfs/Cheng/comparative/aaC226S_HC03_05.200_v1_3 3
core.io.fragments: reading fragments from file: /mnt/hgfs/Cheng/comparative/aaC226S_HC03_05.200_v1_3 ... 
core.io.fragments: rosetta++ fileformat detected! Calling legacy reader... 
core.fragments.ConstantLengthFragSet: finished reading top 200 3mer fragments from file /mnt/hgfs/Cheng/comparative/aaC226S_HC03_05.200_v1_3
protocols.loops.loops_main: Frag libraries debug none 1
protocols.loops.loops_main: Set up 1-mer library from 3-mer library
protocols.loops.loops_main: Fragment libraries: 1   135600
protocols.loops.loops_main: Fragment libraries: 3   45200
protocols.loops.loops_main: Fragment libraries: 9   44000
core.chemical.ResidueTypeSet: Finished initializing fa_standard residue type set.  Created 737 residue types
core.conformation.Conformation: [ WARNING ] missing heavyatom:  OXT on residue GLU:CtermProteinFull 10
core.pack.task: Packer task: initialize from command line() 
protocols.evaluation.ChiWellRmsdEvaluatorCreator: Evaluation Creator active ... 
protocols.jd2.JobDistributor: no more batches to process... 
protocols.jd2.JobDistributor: 0 jobs considered, 0 jobs attempted in 0 seconds
protocols.jd2.JobDistributor: no jobs were attempted, did you forget to pass -overwrite?