Using Rosetta source dir at: /home/tusharranjan/rosetta_bin_linux_2015.31.58019_bundle/main/source Using Rosetta database dir at: /home/tusharranjan/rosetta_bin_linux_2015.31.58019_bundle/main/database No command file found for zinc_homodimer_setup. Skipping. No command file found for zinc_homodimer_design. Skipping. No command file found for zinc_heterodimer. Skipping. No command file found for validate_database. Skipping. No command file found for unfolded_state_energy_calc. Skipping. Running Test backbonegridsampler_nstruct_mode bash /home/tusharranjan/rosetta_bin_linux_2015.31.58019_bundle/main/tests/integration/new/backbonegridsampler_nstruct_mode/command.mpi.sh Finished backbonegridsampler_nstruct_mode in 58 seconds [~ 6 test (2%) started, 281 in queue, 5 running] No command file found for write_mol_file. Skipping. No command file found for vip. Skipping. No command file found for torsion_restricted_sampling. Skipping. No command file found for test_idealize. Skipping. No command file found for symmetry_data_resource. Skipping. No command file found for symmetric_docking. Skipping. No command file found for swm_rna_singleloop. Skipping. No command file found for swm_rna_nickedhelix. Skipping. No command file found for swm_rna_move_two_strands. Skipping. No command file found for swm_rna_move_inside_helix_by_jump. Skipping. No command file found for swm_rna_move_inside_helix_by_bond. Skipping. No command file found for swm_rna_move_align_dock. Skipping. No command file found for swm_rna_loop_design. Skipping. No command file found for swm_rna_fourwayjunction. Skipping. No command file found for swm_protein_preminimize. Skipping. No command file found for swm_protein_move_inside_helix_by_bond. Skipping. No command file found for swm_protein_move_inside_coiledcoil_by_bond. Skipping. No command file found for swm_protein_loop_sampler. Skipping. No command file found for swm_protein_from_scratch. Skipping. No command file found for swm_protein_CCDmove. Skipping. No command file found for swa_rna_loop_sampler. Skipping. No command file found for swa_rna_loop_clusterer. Skipping. No command file found for swa_rna_gagu_23_append_and_kic_close. Skipping. No command file found for swa_rna_gagu_22_prepend_and_kic_close. Skipping. No command file found for swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump. Skipping. No command file found for swa_rna_gagu_20_append_floating_base_by_jump. Skipping. No command file found for swa_rna_gagu_19_prepend_floating_base_by_jump. Skipping. No command file found for swa_rna_gagu_18_rebuild_bulge. Skipping. No command file found for swa_rna_gagu_17_append_floating_base. Skipping. No command file found for swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide. Skipping. No command file found for swa_rna_gagu_15_combine_long_loop_sampling. Skipping. No command file found for swa_rna_gagu_14_combine_long_loop_filtering. Skipping. No command file found for swa_rna_gagu_13_chunk_combination_and_closure. Skipping. No command file found for swa_rna_gagu_12_helix_addition. Skipping. No command file found for swa_rna_gagu_11_append_and_ccd_close. Skipping. No command file found for swa_rna_gagu_10_prepend_and_ccd_close. Skipping. No command file found for swa_rna_gagu_09_sample_virtual_ribose. Skipping. No command file found for swa_rna_gagu_08_append_dinucleotide. Skipping. No command file found for swa_rna_gagu_07_prepend_dinucleotide. Skipping. No command file found for swa_rna_gagu_06_append_to_3primeterminus. Skipping. No command file found for swa_rna_gagu_05_prepend_to_5primeterminus. Skipping. No command file found for swa_rna_gagu_04_clustering. Skipping. No command file found for swa_rna_gagu_03_append_to_silent. Skipping. No command file found for swa_rna_gagu_02_prepend. Skipping. No command file found for swa_rna_gagu_01_append. Skipping. No command file found for swa_rna_erraser. Skipping. No command file found for swa_protein_prepack. Skipping. No command file found for swa_protein_loop_sampler. Skipping. No command file found for swa_protein_combine_loops. Skipping. No command file found for swa_protein_cluster. Skipping. No command file found for swa_protein_build_at_Nterminus. Skipping. No command file found for swa_protein_build_at_Cterminus. Skipping. No command file found for swa_protein_CCDclose. Skipping. No command file found for surface_docking. Skipping. No command file found for supercharge. Skipping. No command file found for super_aln. Skipping. No command file found for splice_out_generic. Skipping. No command file found for splice_out_L3_shorter. Skipping. No command file found for splice_out_L3_same. Skipping. No command file found for splice_out_L3_longer. Skipping. No command file found for splice_out_L1_L2_shorter. Skipping. No command file found for splice_out_L1_L2_same. Skipping. No command file found for splice_out_L1_L2_longer. Skipping. No command file found for splice_out_H3_shorter. Skipping. No command file found for splice_out_H3_same. Skipping. No command file found for splice_out_H3_longer. Skipping. No command file found for splice_out_H1_H2_shorter. Skipping. No command file found for splice_out_H1_H2_same. Skipping. No command file found for splice_out_H1_H2_longer. Skipping. No command file found for splice_in_4loops_shorter. Skipping. No command file found for splice_in_4loops_same_length. Skipping. No command file found for splice_in_4loops_longer. Skipping. No command file found for set_torsion. Skipping. No command file found for sequence_tolerance. Skipping. No command file found for sequence_recovery. Skipping. No command file found for select_best_unique_ligand_poses. Skipping. No command file found for sdf_reader. Skipping. No command file found for score_only_silence. Skipping. No command file found for score_aln. Skipping. No command file found for score12_docking. Skipping. No command file found for rs_loophash. Skipping. No command file found for rs_flexbbmoves. Skipping. No command file found for rotamer_recovery_compare_two_structures. Skipping. No command file found for rotamer_recovery. Skipping. No command file found for rotamer_probability. Skipping. No command file found for rosetta_scripts_setup. Skipping. No command file found for rosetta_scripts_loops. Skipping. No command file found for rosetta_scripts_hbond_options. Skipping. No command file found for rna_suitename. Skipping. No command file found for rna_score. Skipping. No command file found for rna_minimize. Skipping. No command file found for rna_helix. Skipping. No command file found for rna_design. Skipping. No command file found for rna_denovo. Skipping. No command file found for rna_cluster. Skipping. No command file found for rna_assemble. Skipping. No command file found for resource_database_tables. Skipping. No command file found for resource_database_locator. Skipping. No command file found for residue_energy_breakdown. Skipping. No command file found for residue_data_resource. Skipping. No command file found for repack_with_elec_dens. Skipping. No command file found for remodel_helical_repeat. Skipping. No command file found for remodel_disulfides_rosettascripts. Skipping. No command file found for remodel_disulfides. Skipping. No command file found for remodel. Skipping. No command file found for relax_w_allatom_cst. Skipping. No command file found for referencepose_mutateresidue. Skipping. No command file found for recces_turner. Skipping. No command file found for readin_dna_rna_protein. Skipping. No command file found for ppk. Skipping. No command file found for posttranslationalmod_io. Skipping. No command file found for pocket_suggest_targets. Skipping. No command file found for pocket_relax. Skipping. No command file found for pocket_measure. Skipping. No command file found for pmut_scan. Skipping. No command file found for place_simultaneously. Skipping. No command file found for phosphonate. Skipping. No command file found for perturb_helical_bundle_z_offset. Skipping. No command file found for perturb_helical_bundle_copying_pitch. Skipping. No command file found for perturb_helical_bundle. Skipping. No command file found for per_residue_energies. Skipping. No command file found for pepspec_anchor_dock. Skipping. No command file found for pepspec. Skipping. No command file found for orbitals. Skipping. No command file found for oop_design. Skipping. No command file found for nucleobase_sample_around. Skipping. No command file found for nonideal_rtmin. Skipping. No command file found for noe_assignment. Skipping. No command file found for next_generation_KIC. Skipping. No command file found for ncaa_fixbb. Skipping. No command file found for msd_mover. Skipping. No command file found for mr_protocols. Skipping. No command file found for mpi_multistate_design. Skipping. No command file found for mp_symmetry_load. Skipping. No command file found for mp_symdock. Skipping. No command file found for mp_score_jd2. Skipping. No command file found for mp_relax_w_ligand. Skipping. No command file found for mp_relax. Skipping. No command file found for mp_dock_prepack. Skipping. No command file found for mp_dock. Skipping. No command file found for motif_score_filter. Skipping. No command file found for motif_extraction. Skipping. No command file found for molfile_to_params. Skipping. No command file found for minimize_with_elec_dens. Skipping. No command file found for mg_modeler_lores. Skipping. No command file found for mg_modeler. Skipping. No command file found for metalloprotein_abrelax. Skipping. No command file found for membrane_relax_hbond. Skipping. No command file found for membrane_relax. Skipping. No command file found for membrane_abinitio. Skipping. No command file found for match_6cpa. Skipping. No command file found for match_1n9l. Skipping. No command file found for match_1c2t. Skipping. No command file found for make_symmdef_file. Skipping. No command file found for make_rot_lib. Skipping. No command file found for make_exemplar. Skipping. No command file found for make_and_perturb_bundle_multirepeat. Skipping. No command file found for loop_modeling. Skipping. No command file found for ligand_water_docking. Skipping. No command file found for ligand_motif_design. Skipping. No command file found for ligand_dock_script. Skipping. No command file found for ligand_dock_grid. Skipping. No command file found for ligand_dock_7cpa. Skipping. No command file found for kinematic_looprelax. Skipping. No command file found for kinemage_grid_output. Skipping. No command file found for hybridization. Skipping. No command file found for hts_io. Skipping. No command file found for hotspot_graft. Skipping. No command file found for helical_bundle_nonideal. Skipping. No command file found for helical_bundle. Skipping. No command file found for hbs_design. Skipping. No command file found for grid_scores_features. Skipping. No command file found for geometric_solvation. Skipping. No command file found for genkic_bin_setting. Skipping. No command file found for genkic_bin_sampling. Skipping. No command file found for genkic_bin_perturbing. Skipping. No command file found for gen_lig_grids. Skipping. No command file found for gen_apo_grids. Skipping. No command file found for fuzzy. Skipping. No command file found for fragment_picker. Skipping. No command file found for fold_cst_new. Skipping. No command file found for fold_and_dock. Skipping. No command file found for flexpepdock_abinitio. Skipping. No command file found for flexpepdock. Skipping. No command file found for fixbb_resource_manager. Skipping. No command file found for fixbb. Skipping. No command file found for fix_alignment_to_match_pdb. Skipping. No command file found for file_list_locator. Skipping. No command file found for fiber_diffraction_fad. Skipping. No command file found for features_scientific_benchmark. Skipping. No command file found for features_postgres. Skipping. No command file found for features_pdb. Skipping. No command file found for features_parallel. Skipping. No command file found for features. Skipping. No command file found for favor_native_residue. Skipping. No command file found for fast_relax. Skipping. No command file found for extract_pdbs. Skipping. No command file found for extract_atomtree_diffs. Skipping. No command file found for erraser_minimize. Skipping. No command file found for enzdes. Skipping. No command file found for entropy_correction. Skipping. No command file found for doug_dock_design_min_mod2_cal_cal. Skipping. No command file found for docking_site_constraints. Skipping. No command file found for docking_prepack. Skipping. No command file found for docking_low_res. Skipping. No command file found for docking_local_refine_min. Skipping. No command file found for docking_local_refine. Skipping. No command file found for docking_full_protocol. Skipping. No command file found for docking_ensemble_prepack. Skipping. No command file found for docking_ensemble. Skipping. No command file found for docking_distance_constraints. Skipping. No command file found for dock_with_hotspot_place_simultaneously. Skipping. No command file found for dna_interface_design. Skipping. No command file found for density_refine_symm. Skipping. No command file found for density_refine. Skipping. No command file found for ddG_scan. Skipping. No command file found for ddG_of_mutation. Skipping. No command file found for ddG_ensemble. Skipping. No command file found for database_session_resource. Skipping. No command file found for cstfile_to_theozyme_pdb. Skipping. No command file found for cs_rosetta_rna. Skipping. No command file found for coupled_moves. Skipping. No command file found for contactMap. Skipping. No command file found for combine_silent. Skipping. No command file found for code_duplication. Skipping. No command file found for cluster_filter. Skipping. No command file found for cluster_alns. Skipping. No command file found for cluster. Skipping. No command file found for classic_relax_1a19. Skipping. No command file found for centroid_disulfide_scores. Skipping. No command file found for bundlereporter_filter. Skipping. No command file found for bundlegridsampler_z1_offset. Skipping. No command file found for bundlegridsampler_z0_offset. Skipping. No command file found for bundlegridsampler_multirepeat. Skipping. No command file found for bundlegridsampler_design. Skipping. No command file found for bundlegridsampler_copy_pitch. Skipping. No command file found for bundlegridsampler_composition_energy. Skipping. No command file found for bundlegridsampler. Skipping. No command file found for bin_perturbation. Skipping. No command file found for bin_initialization. Skipping. No command file found for beta_strand_homodimer. Skipping. No command file found for backrub. Skipping. No command file found for backbonegridsampler_multiresidue. Skipping. No command file found for backbonegridsampler. Skipping. No command file found for app_exception_handling. Skipping. No command file found for antibody_graft. Skipping. No command file found for antibody_H3. Skipping. No command file found for add_job_pair_data. Skipping. No command file found for abinitio. Skipping. No command file found for Werror_check. Skipping. No command file found for UBQ_Gp_LYX-Cterm. Skipping. No command file found for UBQ_Gp_CYD-CYD. Skipping. No command file found for UBQ_E2_thioester_two_ubiquitins. Skipping. No command file found for UBQ_E2_thioester_extra_bodies. Skipping. No command file found for UBQ_E2_thioester. Skipping. No command file found for RBOut. Skipping. No command file found for ProQ. Skipping. No command file found for LayerDesign_ncaas. Skipping. No command file found for LayerDesign. Skipping. No command file found for KIC_with_fragments. Skipping. No command file found for KIC_vicinity. Skipping. No command file found for KIC_refine. Skipping. No command file found for InterfaceAnalyzer_tracer. Skipping. No command file found for InterfaceAnalyzer_resfile. Skipping. No command file found for InterfaceAnalyzer_prepack. Skipping. No command file found for InterfaceAnalyzer_bothpack. Skipping. No command file found for InterfaceAnalyzer_allscores. Skipping. No command file found for InterfaceAnalyzer. Skipping. No command file found for HOW_TO_MAKE_TESTS. Skipping. No command file found for FloppyTail. Skipping. No command file found for Enzrevert_xml. Skipping. No command file found for DARC_shapeonly. Skipping. No command file found for DARC_sampling_on_the_fly. Skipping. No command file found for DARC_make_ray_files. Skipping. No command file found for DARC_electrostatics. Skipping. No command file found for BuildPeptide. Skipping. No command file found for AnchoredPDBCreator. Skipping. No command file found for AnchoredDesign. Skipping. No command file found for AnchorFinder. Skipping. No command file found for AlterSpecDisruption. Skipping. Running Test bundlegridsampler_design_nstruct_mode bash /home/tusharranjan/rosetta_bin_linux_2015.31.58019_bundle/main/tests/integration/new/bundlegridsampler_design_nstruct_mode/command.mpi.sh Encounter error while executing: bash /home/tusharranjan/rosetta_bin_linux_2015.31.58019_bundle/main/tests/integration/new/bundlegridsampler_design_nstruct_mode/command.mpi.sh *** Test bundlegridsampler_design_nstruct_mode did not run! Check your --mode flag and paths. [2016-05-09 15:00:01.455621] Finished bundlegridsampler_design_nstruct_mode in 3 seconds [~ 287 test (100%) started, 0 in queue, 285 running] FAIL backbonegridsampler_nstruct_mode nonempty diff ref/backbonegridsampler_nstruct_mode/log new/backbonegridsampler_nstruct_mode/log Only in new/backbonegridsampler_nstruct_mode: log_1_noseconds Only in new/backbonegridsampler_nstruct_mode: log_2_noseconds Only in new/backbonegridsampler_nstruct_mode: log_3_noseconds Only in new/backbonegridsampler_nstruct_mode: S_0001.pdb Only in new/backbonegridsampler_nstruct_mode: S_0002.pdb Only in new/backbonegridsampler_nstruct_mode: S_0003.pdb Only in new/backbonegridsampler_nstruct_mode: S_0004.pdb Only in new/backbonegridsampler_nstruct_mode: S_0005.pdb Only in new/backbonegridsampler_nstruct_mode: S_0006.pdb Only in new/backbonegridsampler_nstruct_mode: S_0007.pdb Only in new/backbonegridsampler_nstruct_mode: S_0008.pdb Only in new/backbonegridsampler_nstruct_mode: S_0009.pdb Only in new/backbonegridsampler_nstruct_mode: S_0010.pdb Only in new/backbonegridsampler_nstruct_mode: S_0011.pdb Only in new/backbonegridsampler_nstruct_mode: S_0012.pdb Only in new/backbonegridsampler_nstruct_mode: S_0013.pdb Only in new/backbonegridsampler_nstruct_mode: S_0014.pdb Only in new/backbonegridsampler_nstruct_mode: S_0015.pdb Only in new/backbonegridsampler_nstruct_mode: S_0016.pdb Only in new/backbonegridsampler_nstruct_mode: S_0017.pdb Only in new/backbonegridsampler_nstruct_mode: S_0018.pdb Only in new/backbonegridsampler_nstruct_mode: S_0019.pdb Only in new/backbonegridsampler_nstruct_mode: S_0020.pdb Only in new/backbonegridsampler_nstruct_mode: S_0021.pdb Only in new/backbonegridsampler_nstruct_mode: S_0022.pdb Only in new/backbonegridsampler_nstruct_mode: S_0023.pdb Only in new/backbonegridsampler_nstruct_mode: S_0024.pdb Only in new/backbonegridsampler_nstruct_mode: score_sorted.sc Only in ref/backbonegridsampler_nstruct_mode: .test_did_not_run.log FAIL bundlegridsampler_design_nstruct_mode nonempty diff ref/bundlegridsampler_design_nstruct_mode/log new/bundlegridsampler_design_nstruct_mode/log Only in new/bundlegridsampler_design_nstruct_mode: log_0 Only in new/bundlegridsampler_design_nstruct_mode: log_1 Only in new/bundlegridsampler_design_nstruct_mode: log_2 nonempty diff ref/bundlegridsampler_design_nstruct_mode/.test_did_not_run.log new/bundlegridsampler_design_nstruct_mode/.test_did_not_run.log 2 test(s) failed. Use 'diff' to compare results.