-in
	-file
		-s ./$complex
		-extra_res_fa ./$params
-packing
	-ex1
	-ex1aro
	-ex2
-mute core.util.prof ## dont show timing info
-mute core.io.database
#-restore_pre_talaris_2013_behavior
#-mute all
#-unmute protocols.jd2.JobDistributor
-constraints:cst_fa_file ./constraints
-score:set_weights atom_pair_constraint 1.0
-in:auto_setup_metals
-in:metals_angle_constraint_multiplier 3.0
-in:metals_distance_constraint_multiplier 3.0
-in:ignore_waters false
-ignore_zero_occupancy false
-keep_input_protonation_state true
-nstruct 50
-overwrite