-in
    -ignore_unrecognized_res
    -path
        -database ~/Software/Rosetta/main/database
-run
    -ignore_zero_occupancy false
-docking
    -ligand
        -start_from 100.685 90.070 119.008 
-qsar
    -max_grid_cache_size 1
-jd2
    -delete_old_poses
-nstruct 10
-mistakes
    -restore_pre_talaris_2013_behavior
-score:analytic_etable_evaluation true
-ex1
-ex2