-database /usr/local/xtal/rosetta/v2017.18-17052017/main/database -dualspace -default_max_cycles 200 -beta -in:file:fasta ../vbccc.fasta -parser:protocol ../hybrid.xml #-show_simulation_in_pymol 0.5 #-in:file:native ../vbccc.pdb -nstruct 1000 #DEBUG #-out:levels protocols.environment:debug #-out:levels core.fragment:debug #-out:levels core.pose:debug #-out:levels protocols.jd2:debug