core.kinematics.AtomTree: (10) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
protocols.simple_moves.GenericMonteCarloMover: (2) Trial number: 62
core.kinematics.AtomTree: (10) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (10) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (10) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (10) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (10) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (10) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (10) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (10) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (10) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (10) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (10) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (10) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (10) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (10) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (10) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (10) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (10) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (10) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.pack.interaction_graph.interaction_graph_factory: (12) IG: 2518796 bytes
protocols.rosetta_scripts.ParsedProtocol: (21) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (21) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (21) =======================BEGIN MOVER AtomTree - set_up_foldtree=======================
protocols.protein_interface_design.movers.SetAtomTree: (21) Applying fold_tree: FOLD_TREE  EDGE 134 1 -1  EDGE 134 314 1  EDGE 314 301 -1  EDGE 313 299 2  EDGE 299 268 -1  EDGE 280 266 3  EDGE 266 243 -1  EDGE 314 344 -1  EDGE 332 346 4  EDGE 346 377 -1  EDGE 365 379 5  EDGE 379 396 -1  EDGE 134 152 -1  EDGE 145 153 6  EDGE 153 180 -1  EDGE 176 182 7  EDGE 182 221 -1  EDGE 216 223 8  EDGE 223 242 -1  EDGE 299 300 -1  EDGE 266 267 -1  EDGE 346 345 -1  EDGE 379 378 -1  EDGE 182 181 -1  EDGE 223 222 -1 
protocols.simple_moves.GenericMonteCarloMover: (23) Trial number: 57
protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb=======================
protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER =======================
protocols.simple_moves.GenericMonteCarloMover: (22) Trial number: 32
protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack=======================
protocols.rosetta_scripts.ParsedProtocol: (21) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (21) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (21) =======================BEGIN MOVER MinMover - minimize_flex=======================
core.pack.interaction_graph.interaction_graph_factory: (19) IG: 2414244 bytes
core.pack.task: (2) Packer task: initialize from command line() 
protocols.rosetta_scripts.ParsedProtocol: (15) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (15) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (15) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (15) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (15) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (15) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (15) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (15) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (15) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (15) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (15) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (15) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (15) ============End report for ==================
core.optimization.LineMinimizer: (5) [ ERROR ] Inaccurate G! step= 3.8147e-06 Deriv= -0.0732722 Finite Diff= 0.0780686
protocols.rosetta_scripts.ParsedProtocol: (15) =======================BEGIN FILTER =======================
protocols.simple_moves.GenericMonteCarloMover: (14) Trial number: 97
protocols.rosetta_scripts.ParsedProtocol: (23) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb=======================
protocols.rosetta_scripts.ParsedProtocol: (23) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (23) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (23) =======================BEGIN MOVER PackRotamersMover - repack=======================
protocols.rosetta_scripts.ParsedProtocol: (22) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb=======================
protocols.rosetta_scripts.ParsedProtocol: (22) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (22) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (22) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (22) Packer task: initialize from command line() 
core.pack.task: (23) Packer task: initialize from command line() 
protocols.rosetta_scripts.ParsedProtocol: (14) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb=======================
protocols.rosetta_scripts.ParsedProtocol: (14) =======================BEGIN FILTER =======================
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
protocols.rosetta_scripts.ParsedProtocol: (14) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (14) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.pack.task: (14) Packer task: initialize from command line() 
core.pack.interaction_graph.interaction_graph_factory: (16) IG: 1825304 bytes
protocols.rosetta_scripts.ParsedProtocol: (5) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (5) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (5) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (5) Packer task: initialize from command line() 
protocols.rosetta_scripts.ParsedProtocol: (12) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (12) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (12) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc=======================
protocols.rosetta_scripts.ParsedProtocol: (15) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (15) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (15) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (15) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (15) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (15) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (15) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (15) ============End report for ==================
core.pack.task: (12) Packer task: initialize from command line() 
core.pack.interaction_graph.interaction_graph_factory: (18) IG: 4677988 bytes
protocols.simple_moves.GenericMonteCarloMover: (13) Trial number: 87
core.pack.pack_rotamers: (30) built 1482 rotamers at 54 positions.
core.pack.interaction_graph.interaction_graph_factory: (30) Instantiating DensePDInteractionGraph
protocols.rosetta_scripts.ParsedProtocol: (13) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb=======================
protocols.rosetta_scripts.ParsedProtocol: (13) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (13) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (13) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (13) Packer task: initialize from command line() 
protocols.docking.DockingProtocol: (31) ////////////////////////////////////////////////////////////////////////////////
protocols.docking.DockingProtocol: (31) ///                     Rosetta 3 Docking Protocol                           ///
protocols.docking.DockingProtocol: (31) ///                                                                          ///
protocols.docking.DockingProtocol: (31) /// Dockable Jumps: 1                                                        ///
protocols.docking.DockingProtocol: (31) /// Low Resolution Docking Protocol:   on                                    ///
protocols.docking.DockingProtocol: (31) /// High Resolution Docking Protocol: off                                    ///
protocols.docking.DockingProtocol: (31) /// Low Resolution Filter:   on                                              ///
protocols.docking.DockingProtocol: (31) /// High Resolution Filter: off                                              ///
protocols.docking.DockingProtocol: (31) ////////////////////////////////////////////////////////////////////////////////
protocols.simple_moves.GenericMonteCarloMover: (26) Trial number: 58
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
protocols.rosetta_scripts.ParsedProtocol: (26) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb=======================
protocols.rosetta_scripts.ParsedProtocol: (26) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (26) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (26) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (26) Packer task: initialize from command line() 
protocols.rosetta_scripts.ParsedProtocol: (16) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (16) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (16) =======================BEGIN MOVER ParsedProtocol - minimize_interface=======================
protocols.rosetta_scripts.ParsedProtocol: (16) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.interaction_graph.interaction_graph_factory: (28) IG: 2729096 bytes
core.pack.task: (16) Packer task: initialize from command line() 
core.pack.pack_rotamers: (5) built 577 rotamers at 22 positions.
core.pack.interaction_graph.interaction_graph_factory: (5) Instantiating DensePDInteractionGraph
protocols.rosetta_scripts.ParsedProtocol: (19) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (19) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (19) =======================BEGIN MOVER AtomTree - set_up_foldtree=======================
protocols.protein_interface_design.movers.SetAtomTree: (19) Applying fold_tree: FOLD_TREE  EDGE 134 1 -1  EDGE 134 314 1  EDGE 314 301 -1  EDGE 313 299 2  EDGE 299 268 -1  EDGE 280 266 3  EDGE 266 243 -1  EDGE 314 344 -1  EDGE 332 346 4  EDGE 346 377 -1  EDGE 365 379 5  EDGE 379 396 -1  EDGE 134 152 -1  EDGE 145 153 6  EDGE 153 180 -1  EDGE 176 182 7  EDGE 182 221 -1  EDGE 216 223 8  EDGE 223 242 -1  EDGE 299 300 -1  EDGE 266 267 -1  EDGE 346 345 -1  EDGE 379 378 -1  EDGE 182 181 -1  EDGE 223 222 -1 
protocols.simple_moves.GenericMonteCarloMover: (15) Trial number: 73
protocols.rosetta_scripts.ParsedProtocol: (19) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (19) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (19) =======================BEGIN MOVER MinMover - minimize_flex=======================
protocols.rosetta_scripts.ParsedProtocol: (15) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb=======================
protocols.rosetta_scripts.ParsedProtocol: (15) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (15) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (15) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.pack_rotamers: (17) built 1781 rotamers at 67 positions.
core.pack.interaction_graph.interaction_graph_factory: (17) Instantiating DensePDInteractionGraph
core.pack.task: (15) Packer task: initialize from command line() 
protocols.rosetta_scripts.ParsedProtocol: (18) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (18) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (18) =======================BEGIN MOVER AtomTree - set_up_foldtree=======================
protocols.protein_interface_design.movers.SetAtomTree: (18) Applying fold_tree: FOLD_TREE  EDGE 134 1 -1  EDGE 134 314 1  EDGE 314 301 -1  EDGE 313 299 2  EDGE 299 268 -1  EDGE 280 266 3  EDGE 266 243 -1  EDGE 314 344 -1  EDGE 332 346 4  EDGE 346 377 -1  EDGE 365 379 5  EDGE 379 396 -1  EDGE 134 152 -1  EDGE 145 153 6  EDGE 153 180 -1  EDGE 176 182 7  EDGE 182 221 -1  EDGE 216 223 8  EDGE 223 242 -1  EDGE 299 300 -1  EDGE 266 267 -1  EDGE 346 345 -1  EDGE 379 378 -1  EDGE 182 181 -1  EDGE 223 222 -1 
core.pack.pack_rotamers: (22) built 834 rotamers at 32 positions.
core.pack.interaction_graph.interaction_graph_factory: (22) Instantiating DensePDInteractionGraph
protocols.rosetta_scripts.ParsedProtocol: (18) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (18) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (18) =======================BEGIN MOVER MinMover - minimize_flex=======================
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.pack.pack_rotamers: (11) built 1861 rotamers at 67 positions.
core.pack.interaction_graph.interaction_graph_factory: (11) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (7) IG: 2179000 bytes
core.pack.interaction_graph.interaction_graph_factory: (24) IG: 944992 bytes
protocols.rosetta_scripts.ParsedProtocol: (28) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (28) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (28) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc=======================
core.pack.task: (28) Packer task: initialize from command line() 
core.kinematics.AtomTree: (18) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (18) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (18) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (18) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (18) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (18) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (18) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (18) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (18) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (18) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (18) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (18) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (18) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (18) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (18) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (18) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (18) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (18) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.kinematics.AtomTree: (18) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (18) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (18) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (18) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (18) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (18) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (18) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (18) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (18) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (18) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (18) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (18) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (18) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (18) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (18) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (18) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (18) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (18) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.pack.pack_rotamers: (25) built 1991 rotamers at 76 positions.
core.pack.interaction_graph.interaction_graph_factory: (25) Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: (3) built 2094 rotamers at 80 positions.
core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: (13) built 738 rotamers at 32 positions.
core.pack.interaction_graph.interaction_graph_factory: (13) Instantiating DensePDInteractionGraph
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.optimization.LineMinimizer: (29) [ ERROR ] Inaccurate G! step= 2.91038e-13 Deriv= -30557.1 Finite Diff= 549.609
core.pack.pack_rotamers: (2) built 1384 rotamers at 51 positions.
core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (5) IG: 410304 bytes
core.optimization.LineMinimizer: (12) [ ERROR ] Inaccurate G! step= 3.8147e-08 Deriv= -2.61417 Finite Diff= 0.889221
protocols.rosetta_scripts.ParsedProtocol: (5) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (5) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (5) =======================BEGIN MOVER AtomTree - set_up_foldtree=======================
protocols.protein_interface_design.movers.SetAtomTree: (5) Applying fold_tree: FOLD_TREE  EDGE 134 1 -1  EDGE 134 314 1  EDGE 314 301 -1  EDGE 313 299 2  EDGE 299 268 -1  EDGE 280 266 3  EDGE 266 243 -1  EDGE 314 344 -1  EDGE 332 346 4  EDGE 346 377 -1  EDGE 365 379 5  EDGE 379 396 -1  EDGE 134 152 -1  EDGE 145 153 6  EDGE 153 180 -1  EDGE 176 182 7  EDGE 182 221 -1  EDGE 216 223 8  EDGE 223 242 -1  EDGE 299 300 -1  EDGE 266 267 -1  EDGE 346 345 -1  EDGE 379 378 -1  EDGE 182 181 -1  EDGE 223 222 -1 
protocols.rosetta_scripts.ParsedProtocol: (5) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (5) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (5) =======================BEGIN MOVER MinMover - minimize_flex=======================
core.pack.pack_rotamers: (27) built 1411 rotamers at 45 positions.
core.pack.interaction_graph.interaction_graph_factory: (27) Instantiating DensePDInteractionGraph
protocols.rosetta_scripts.ParsedProtocol: (7) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (7) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (7) =======================BEGIN MOVER ParsedProtocol - minimize_interface=======================
protocols.rosetta_scripts.ParsedProtocol: (7) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (7) Packer task: initialize from command line() 
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.pack.pack_rotamers: (16) built 1502 rotamers at 54 positions.
core.pack.interaction_graph.interaction_graph_factory: (16) Instantiating DensePDInteractionGraph
protocols.rosetta_scripts.ParsedProtocol: (24) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (24) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (24) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc=======================
core.pack.pack_rotamers: (23) built 1518 rotamers at 56 positions.
core.pack.interaction_graph.interaction_graph_factory: (23) Instantiating DensePDInteractionGraph
core.pack.task: (24) Packer task: initialize from command line() 
core.pack.pack_rotamers: (14) built 1678 rotamers at 51 positions.
core.pack.interaction_graph.interaction_graph_factory: (14) Instantiating DensePDInteractionGraph
protocols.rosetta_scripts.ParsedProtocol: (12) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (12) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (12) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (12) Packer task: initialize from command line() 
core.optimization.LineMinimizer: (4) [ ERROR ] Inaccurate G! step= 6.78477e-07 Deriv= -126.447 Finite Diff= -0.782977
core.optimization.Minimizer: (4) Line search failed even after resetting Hessian; aborting at iter#10
core.pack.pack_rotamers: (15) built 1252 rotamers at 50 positions.
core.pack.interaction_graph.interaction_graph_factory: (15) Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: (20) built 2113 rotamers at 74 positions.
core.pack.interaction_graph.interaction_graph_factory: (20) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (22) IG: 905568 bytes
core.optimization.LineMinimizer: (9) [ ERROR ] Inaccurate G! step= 1.04914e-07 Deriv= -5288.27 Finite Diff= 3.31747
core.optimization.Minimizer: (9) Line search failed even after resetting Hessian; aborting at iter#1
core.pack.pack_rotamers: (26) built 2407 rotamers at 80 positions.
core.pack.interaction_graph.interaction_graph_factory: (26) Instantiating DensePDInteractionGraph
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.pack.interaction_graph.interaction_graph_factory: (13) IG: 533420 bytes
protocols.rosetta_scripts.ParsedProtocol: (22) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (22) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (22) =======================BEGIN MOVER ParsedProtocol - minimize_interface=======================
protocols.rosetta_scripts.ParsedProtocol: (22) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.interaction_graph.interaction_graph_factory: (30) IG: 1850944 bytes
protocols.rosetta_scripts.ParsedProtocol: (13) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (13) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (13) =======================BEGIN MOVER ParsedProtocol - minimize_interface=======================
protocols.rosetta_scripts.ParsedProtocol: (13) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (13) Packer task: initialize from command line() 
core.pack.task: (22) Packer task: initialize from command line() 
protocols.rosetta_scripts.ParsedProtocol: (4) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (4) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (4) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (4) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (4) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (4) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (4) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (4) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (4) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (4) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (4) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (4) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (4) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol: (4) =======================BEGIN FILTER =======================
core.pack.pack_rotamers: (7) built 1654 rotamers at 67 positions.
core.pack.interaction_graph.interaction_graph_factory: (7) Instantiating DensePDInteractionGraph
protocols.rosetta_scripts.ParsedProtocol: (9) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (9) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (9) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (9) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (9) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (9) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (9) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (9) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (9) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (9) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (9) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (9) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (9) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol: (9) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (30) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (30) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (30) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc=======================
core.pack.task: (30) Packer task: initialize from command line() 
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.pack.interaction_graph.interaction_graph_factory: (15) IG: 1244516 bytes
protocols.docking.DockingProtocol: (31) setting up the constraint set mover
core.optimization.LineMinimizer: (29) [ ERROR ] Inaccurate G! step= 1.81249e-08 Deriv= -177185 Finite Diff= -111.788
core.optimization.Minimizer: (29) Line search failed even after resetting Hessian; aborting at iter#38
core.pack.pack_rotamers: (12) built 1746 rotamers at 69 positions.
core.pack.interaction_graph.interaction_graph_factory: (12) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1715604 bytes
core.optimization.LineMinimizer: (28) [ ERROR ] Inaccurate G! step= 1.90735e-06 Deriv= -3.93089 Finite Diff= 0.984941
core.pack.interaction_graph.interaction_graph_factory: (27) IG: 1834236 bytes
protocols.docking.DockingProtocol: (31) FOLD_TREE  EDGE 1 134 -1  EDGE 134 152 -1  EDGE 134 314 1  EDGE 152 153 2  EDGE 314 243 -1  EDGE 314 396 -1  EDGE 153 242 -1 
protocols.docking.DockingInitialPerturbation: (31) dock_pert: true
protocols.docking.DockingInitialPerturbation: (31) option[ docking::dock_pert ]()12 6
protocols.rosetta_scripts.ParsedProtocol: (9) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (9) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (9) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (9) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (9) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (9) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (9) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (9) ============End report for ==================
protocols.docking.DockingInitialPerturbation: (31) sliding into contact for centroid mode
core.optimization.LineMinimizer: (24) [ ERROR ] Inaccurate G! step= 3.8147e-08 Deriv= -0.458994 Finite Diff= -0.0124067
protocols.rosetta_scripts.ParsedProtocol: (4) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (4) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (4) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (4) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (4) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (4) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (4) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (4) ============End report for ==================
core.optimization.LineMinimizer: (19) [ ERROR ] Inaccurate G! step= 3.8147e-08 Deriv= -141020 Finite Diff= -1264.87
core.pack.interaction_graph.interaction_graph_factory: (16) IG: 1825304 bytes
protocols.rosetta_scripts.ParsedProtocol: (15) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (15) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (15) =======================BEGIN MOVER ParsedProtocol - minimize_interface=======================
protocols.rosetta_scripts.ParsedProtocol: (15) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (15) Packer task: initialize from command line() 
protocols.rosetta_scripts.ParsedProtocol: (24) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (24) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (24) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (24) Packer task: initialize from command line() 
core.optimization.LineMinimizer: (5) [ ERROR ] Inaccurate G! step= 3.8147e-08 Deriv= -738369 Finite Diff= -1.83379
protocols.rosetta_scripts.ParsedProtocol: (27) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (27) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (27) =======================BEGIN MOVER AtomTree - set_up_foldtree=======================
protocols.protein_interface_design.movers.SetAtomTree: (27) Applying fold_tree: FOLD_TREE  EDGE 134 1 -1  EDGE 134 314 1  EDGE 314 301 -1  EDGE 313 299 2  EDGE 299 268 -1  EDGE 280 266 3  EDGE 266 243 -1  EDGE 314 344 -1  EDGE 332 346 4  EDGE 346 377 -1  EDGE 365 379 5  EDGE 379 396 -1  EDGE 134 152 -1  EDGE 145 153 6  EDGE 153 180 -1  EDGE 176 182 7  EDGE 182 221 -1  EDGE 216 223 8  EDGE 223 242 -1  EDGE 299 300 -1  EDGE 266 267 -1  EDGE 346 345 -1  EDGE 379 378 -1  EDGE 182 181 -1  EDGE 223 222 -1 
core.pack.interaction_graph.interaction_graph_factory: (17) IG: 2444080 bytes
protocols.docking.DockingInitialPerturbation: (31) sliding into contact
protocols.docking.DockingInitialPerturbation: (31) Moving away
protocols.docking.DockingInitialPerturbation: (31) Moving together
protocols.moves.RigidBodyMover: (31) Translate: Jump (before): RT 0.974368 0.222627 0.0323016 -0.154799 0.767724 -0.621802 -0.163229 0.600864 0.782508 -1.69089 -29.7561 -4.97086  
protocols.moves.RigidBodyMover: (31) Translate: Jump (after):  RT 0.974368 0.222627 0.0323016 -0.154799 0.767724 -0.621802 -0.163229 0.600864 0.782508 -1.63114 -28.767 -4.83612  
protocols.rosetta_scripts.ParsedProtocol: (28) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (28) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (28) =======================BEGIN MOVER PackRotamersMover - repack=======================
protocols.moves.RigidBodyMover: (31) Translate: Jump (before): RT 0.974368 0.222627 0.0323016 -0.154799 0.767724 -0.621802 -0.163229 0.600864 0.782508 -1.63114 -28.767 -4.83612  
protocols.moves.RigidBodyMover: (31) Translate: Jump (after):  RT 0.974368 0.222627 0.0323016 -0.154799 0.767724 -0.621802 -0.163229 0.600864 0.782508 -1.5714 -27.778 -4.70138  
core.pack.task: (28) Packer task: initialize from command line() 
protocols.rosetta_scripts.ParsedProtocol: (27) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (27) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (27) =======================BEGIN MOVER MinMover - minimize_flex=======================
protocols.moves.RigidBodyMover: (31) Translate: Jump (before): RT 0.974368 0.222627 0.0323016 -0.154799 0.767724 -0.621802 -0.163229 0.600864 0.782508 -1.5714 -27.778 -4.70138  
protocols.moves.RigidBodyMover: (31) Translate: Jump (after):  RT 0.974368 0.222627 0.0323016 -0.154799 0.767724 -0.621802 -0.163229 0.600864 0.782508 -1.51165 -26.7889 -4.56664  
protocols.moves.RigidBodyMover: (31) Translate: Jump (before): RT 0.974368 0.222627 0.0323016 -0.154799 0.767724 -0.621802 -0.163229 0.600864 0.782508 -1.51165 -26.7889 -4.56664  
core.pack.interaction_graph.interaction_graph_factory: (23) IG: 1844784 bytes
protocols.moves.RigidBodyMover: (31) Translate: Jump (after):  RT 0.974368 0.222627 0.0323016 -0.154799 0.767724 -0.621802 -0.163229 0.600864 0.782508 -1.5714 -27.778 -4.70138  
protocols.docking.DockingProtocol: (31) finished initial perturbation
protocols.simple_moves.GenericMonteCarloMover: (9) Trial number: 42
protocols.rosetta_scripts.ParsedProtocol: (16) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (16) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (16) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc=======================
core.pack.task: (16) Packer task: initialize from command line() 
protocols.simple_moves.GenericMonteCarloMover: (4) Trial number: 57
protocols.rosetta_scripts.ParsedProtocol: (29) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (29) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (29) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (29) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (29) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (29) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (29) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (29) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (29) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (29) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (29) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (29) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (29) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol: (29) =======================BEGIN FILTER =======================
protocols.docking.DockingLowRes: (31) in DockingLowRes.apply
protocols.rosetta_scripts.ParsedProtocol: (9) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb=======================
protocols.rosetta_scripts.ParsedProtocol: (9) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (9) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (9) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.pack.task: (9) Packer task: initialize from command line() 
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.pack.pack_rotamers: (22) built 834 rotamers at 32 positions.
core.pack.interaction_graph.interaction_graph_factory: (22) Instantiating DensePDInteractionGraph
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
protocols.rosetta_scripts.ParsedProtocol: (4) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb=======================
protocols.rosetta_scripts.ParsedProtocol: (4) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (4) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (4) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (4) Packer task: initialize from command line() 
protocols.rosetta_scripts.ParsedProtocol: (30) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (30) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (30) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (30) Packer task: initialize from command line() 
core.pack.interaction_graph.interaction_graph_factory: (3) IG: 2407548 bytes
core.pack.interaction_graph.interaction_graph_factory: (11) IG: 2654004 bytes
protocols.rosetta_scripts.ParsedProtocol: (17) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (17) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (17) =======================BEGIN MOVER AtomTree - set_up_foldtree=======================
protocols.protein_interface_design.movers.SetAtomTree: (17) Applying fold_tree: FOLD_TREE  EDGE 134 1 -1  EDGE 134 314 1  EDGE 314 301 -1  EDGE 313 299 2  EDGE 299 268 -1  EDGE 280 266 3  EDGE 266 243 -1  EDGE 314 344 -1  EDGE 332 346 4  EDGE 346 377 -1  EDGE 365 379 5  EDGE 379 396 -1  EDGE 134 152 -1  EDGE 145 153 6  EDGE 153 180 -1  EDGE 176 182 7  EDGE 182 221 -1  EDGE 216 223 8  EDGE 223 242 -1  EDGE 299 300 -1  EDGE 266 267 -1  EDGE 346 345 -1  EDGE 379 378 -1  EDGE 182 181 -1  EDGE 223 222 -1 
protocols.rosetta_scripts.ParsedProtocol: (23) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (23) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (23) =======================BEGIN MOVER ParsedProtocol - minimize_interface=======================
protocols.rosetta_scripts.ParsedProtocol: (23) =======================BEGIN MOVER PackRotamersMover - repack=======================
protocols.rosetta_scripts.ParsedProtocol: (17) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (17) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (17) =======================BEGIN MOVER MinMover - minimize_flex=======================
core.pack.task: (23) Packer task: initialize from command line() 
core.pack.interaction_graph.interaction_graph_factory: (14) IG: 2312008 bytes
core.kinematics.AtomTree: (17) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (17) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (17) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (17) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (17) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (17) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (17) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (17) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (17) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (17) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (17) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (17) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (17) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (17) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (17) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (17) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (17) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (17) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.kinematics.AtomTree: (17) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (17) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (17) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (17) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (17) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (17) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (17) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (17) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (17) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (17) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (17) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (17) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (17) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (17) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (17) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (17) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (17) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (17) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.pack.interaction_graph.interaction_graph_factory: (25) IG: 2788100 bytes
protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER ParsedProtocol - minimize_interface=======================
protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (2) Packer task: initialize from command line() 
protocols.rosetta_scripts.ParsedProtocol: (29) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (29) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (29) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (29) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (29) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (29) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (29) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (29) ============End report for ==================
core.optimization.LineMinimizer: (8) [ ERROR ] Inaccurate G! step= 2.38419e-09 Deriv= -24.1316 Finite Diff= -1.7159
protocols.rosetta_scripts.ParsedProtocol: (11) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (11) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (11) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc=======================
core.pack.pack_rotamers: (13) built 738 rotamers at 32 positions.
core.pack.interaction_graph.interaction_graph_factory: (13) Instantiating DensePDInteractionGraph
core.pack.task: (11) Packer task: initialize from command line() 
protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc=======================
core.pack.task: (3) Packer task: initialize from command line() 
protocols.rosetta_scripts.ParsedProtocol: (14) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (14) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (14) =======================BEGIN MOVER ParsedProtocol - minimize_interface=======================
protocols.rosetta_scripts.ParsedProtocol: (14) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (14) Packer task: initialize from command line() 
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.pack.pack_rotamers: (24) built 1022 rotamers at 35 positions.
core.pack.interaction_graph.interaction_graph_factory: (24) Instantiating DensePDInteractionGraph
protocols.simple_moves.GenericMonteCarloMover: (29) Trial number: 8
core.pack.pack_rotamers: (9) built 1164 rotamers at 52 positions.
core.pack.interaction_graph.interaction_graph_factory: (9) Instantiating DensePDInteractionGraph
protocols.rosetta_scripts.ParsedProtocol: (29) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb=======================
protocols.rosetta_scripts.ParsedProtocol: (29) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (29) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (29) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.optimization.LineMinimizer: (19) [ ERROR ] Inaccurate G! step= 2.03165e-08 Deriv= -141020 Finite Diff= -1264.97
core.optimization.Minimizer: (19) Line search failed even after resetting Hessian; aborting at iter#1
protocols.docking.DockingLowRes: (31) ////////////////////////////////////////////////////////////////////////////////
core.pack.task: (29) Packer task: initialize from command line() 
protocols.docking.DockingLowRes: (31) ///                       Docking Low Res Protocol                           ///
protocols.docking.DockingLowRes: (31) ///                                                                          ///
protocols.docking.DockingLowRes: (31) /// Centroid Inner Cycles: 50                                                ///
protocols.docking.DockingLowRes: (31) /// Centroid Outer Cycles: 10                                                ///
protocols.docking.DockingLowRes: (31) /// Scorefunction:                                                           ///
protocols.docking.DockingLowRes: (31) ScoreFunction::show():
weights: (interchain_pair 1) (interchain_vdw 1) (atom_pair_constraint 5) (interchain_env 1) (interchain_contact 2)
energy_method_options: EnergyMethodOptions::show: aa_composition_setup_files: 
protocols.docking.DockingLowRes: (31) EnergyMethodOptions::show: aspartimide_penalty_value: 25
protocols.docking.DockingLowRes: (31) EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT
analytic_etable_evaluation: 1
EnergyMethodOptions::show: method_weights: free_res
EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12
protocols.docking.DockingLowRes: (31) EnergyMethodOptions::show: split_unfolded_label_type: SPLIT_UNFOLDED_MM
protocols.docking.DockingLowRes: (31) EnergyMethodOptions::show: split_unfolded_value_type: SPLIT_UNFOLDED_BOLTZ
protocols.docking.DockingLowRes: (31) EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid
protocols.docking.DockingLowRes: (31) EnergyMethodOptions::show: exclude_protein_protein_fa_elec: false
protocols.docking.DockingLowRes: (31) EnergyMethodOptions::show: exclude_monomer_fa_elec: false
protocols.docking.DockingLowRes: (31) EnergyMethodOptions::show: elec_max_dis: 5.5
protocols.docking.DockingLowRes: (31) EnergyMethodOptions::show: elec_min_dis: 1.6
protocols.docking.DockingLowRes: (31) EnergyMethodOptions::show: elec_die: 10
protocols.docking.DockingLowRes: (31) EnergyMethodOptions::show: elec_no_dis_dep_die: false
protocols.docking.DockingLowRes: (31) EnergyMethodOptions::show: elec_sigmoidal_die: true
protocols.docking.DockingLowRes: (31) EnergyMethodOptions::show: elec_sigmoidal_D: 80
protocols.docking.DockingLowRes: (31) EnergyMethodOptions::show: elec_sigmoidal_D0: 6
protocols.docking.DockingLowRes: (31) EnergyMethodOptions::show: elec_sigmoidal_S: 0.4
protocols.docking.DockingLowRes: (31) EnergyMethodOptions::show: smooth_fa_elec: true
protocols.docking.DockingLowRes: (31) EnergyMethodOptions::show: grpelec_fade_type: false
protocols.docking.DockingLowRes: (31) EnergyMethodOptions::show: grpelec_fade_param1: 1
protocols.docking.DockingLowRes: (31) EnergyMethodOptions::show: grpelec_fade_param2: 1
protocols.docking.DockingLowRes: (31) EnergyMethodOptions::show: grpelec_fade_hbond: 0
protocols.docking.DockingLowRes: (31) EnergyMethodOptions::show: grp_cpfxn: 1
protocols.docking.DockingLowRes: (31) EnergyMethodOptions::show: elec_group_file: /scoring/score_functions/elec_group_def.dat
protocols.docking.DockingLowRes: (31) EnergyMethodOptions::show: grpelec_context_dependent: 0
protocols.docking.DockingLowRes: (31) EnergyMethodOptions::show: use_polarization: true
protocols.docking.DockingLowRes: (31) EnergyMethodOptions::show: use_gen_kirkwood: true
protocols.docking.DockingLowRes: (31) EnergyMethodOptions::show: protein_dielectric: 1
protocols.docking.DockingLowRes: (31) EnergyMethodOptions::show: water_dielectric: 78.3
protocols.docking.DockingLowRes: (31) EnergyMethodOptions::show: exclude_DNA_DNA: true
protocols.docking.DockingLowRes: (31) EnergyMethodOptions::show: exclude_intra_res_protein: true
protocols.docking.DockingLowRes: (31) EnergyMethodOptions::show: put_intra_into_total: false
protocols.docking.DockingLowRes: (31) EnergyMethodOptions::show: geom_sol_interres_path_distance_cutoff: false
protocols.docking.DockingLowRes: (31) EnergyMethodOptions::show: geom_sol_intrares_path_distance_cutoff: true
protocols.docking.DockingLowRes: (31) EnergyMethodOptions::show: eval_intrares_elec_ST_only: false
protocols.docking.DockingLowRes: (31) EnergyMethodOptions::show: envsmooth_zero_negatives: false
protocols.docking.DockingLowRes: (31) EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615
protocols.docking.DockingLowRes: (31) EnergyMethodOptions::show: pb_bound_tag: bound
protocols.docking.DockingLowRes: (31) EnergyMethodOptions::show: pb_unbound_tag: unbound
protocols.docking.DockingLowRes: (31) EnergyMethodOptions::show: bond_angle_central_atoms_to_score:
protocols.docking.DockingLowRes: (31) EnergyMethodOptions::show: bond_angle_residue_type_param_set: none
protocols.docking.DockingLowRes: (31) HBondOptions::show: exclude_DNA_DNA: true
protocols.docking.DockingLowRes: (31) HBondOptions::show: exclude_intra_res_protein_: true
protocols.docking.DockingLowRes: (31) HBondOptions::show: exclude_intra_res_RNA_: false
protocols.docking.DockingLowRes: (31) HBondOptions::show: put_intra_into_total_: false
protocols.docking.DockingLowRes: (31) HBondOptions::show: exclude_self_hbonds: true
protocols.docking.DockingLowRes: (31) HBondOptions::show: use_hb_env_dep: true
protocols.docking.DockingLowRes: (31) HBondOptions::show: use_hb_env_dep_DNA: true
protocols.docking.DockingLowRes: (31) HBondOptions::show: smooth_hb_env_dep: true
protocols.docking.DockingLowRes: (31) HBondOptions::show: bb_donor_acceptor_check: true
protocols.docking.DockingLowRes: (31) HBondOptions::show: decompose_bb_hb_into_pair_energies: false
protocols.docking.DockingLowRes: (31) HBondOptions::show: params_database_tag_: ref2015_params
protocols.docking.DockingLowRes: (31) HBondOptions::show: use_sp2_chi_penalty_: true
protocols.docking.DockingLowRes: (31) HBondOptions::show: sp2_BAH180_rise_: 0.75
protocols.docking.DockingLowRes: (31) HBondOptions::show: sp2_outer_width_: 0.357
protocols.docking.DockingLowRes: (31) HBondOptions::show: measure_sp3acc_BAH_from_hvy_: true
protocols.docking.DockingLowRes: (31) HBondOptions::show: fade_energy_: 1
protocols.docking.DockingLowRes: (31) HBondOptions::show: exclude_ether_oxygens_: 0
protocols.docking.DockingLowRes: (31) HBondOptions::show: Mbhbond: false 
protocols.docking.DockingLowRes: (31) HbondOptions::show: mphbond: false
protocols.docking.DockingLowRes: (31) HBondOptions::show: hbond_energy_shift: 0
protocols.docking.DockingLowRes: (31) HBondOptions::show: water_hybrid_sf: false
protocols.docking.DockingLowRes: (31) RNA_EnergyMethodOptions::show: syn_G_potential_bonus: 0
protocols.docking.DockingLowRes: (31) RNA_EnergyMethodOptions::show: torsion_potential: ps_04282011
protocols.docking.DockingLowRes: (31) RNA_EnergyMethodOptions::show: suiteness_bonus: Richardson
protocols.docking.DockingLowRes: (31) FreeDOF_Options::show: free_suite_bonus: -1
protocols.docking.DockingLowRes: (31) FreeDOF_Options::show: free_2HOprime_bonus: -0.5
protocols.docking.DockingLowRes: (31) FreeDOF_Options::show: free_sugar_bonus: -1
protocols.docking.DockingLowRes: (31) FreeDOF_Options::show: pack_phosphate_penalty: 0.25
protocols.docking.DockingLowRes: (31) FreeDOF_Options::show: free_side_chain_bonus: -0.5
protocols.docking.DockingLowRes: (31) 
protocols.docking.DockingLowRes: (31) 
protocols.docking.DockingLowRes: (31) ////////////////////////////////////////////////////////////////////////////////
protocols.docking.DockingLowRes: (31) ::::::::::::::::::Centroid Rigid Body Adaptive:::::::::::::::::::
core.pack.pack_rotamers: (15) built 1252 rotamers at 50 positions.
core.pack.interaction_graph.interaction_graph_factory: (15) Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: (30) built 1482 rotamers at 54 positions.
core.pack.interaction_graph.interaction_graph_factory: (30) Instantiating DensePDInteractionGraph
protocols.rosetta_scripts.ParsedProtocol: (25) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (25) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (25) =======================BEGIN MOVER AtomTree - set_up_foldtree=======================
protocols.protein_interface_design.movers.SetAtomTree: (25) Applying fold_tree: FOLD_TREE  EDGE 134 1 -1  EDGE 134 314 1  EDGE 314 301 -1  EDGE 313 299 2  EDGE 299 268 -1  EDGE 280 266 3  EDGE 266 243 -1  EDGE 314 344 -1  EDGE 332 346 4  EDGE 346 377 -1  EDGE 365 379 5  EDGE 379 396 -1  EDGE 134 152 -1  EDGE 145 153 6  EDGE 153 180 -1  EDGE 176 182 7  EDGE 182 221 -1  EDGE 216 223 8  EDGE 223 242 -1  EDGE 299 300 -1  EDGE 266 267 -1  EDGE 346 345 -1  EDGE 379 378 -1  EDGE 182 181 -1  EDGE 223 222 -1 
protocols.rosetta_scripts.ParsedProtocol: (25) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (25) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (25) =======================BEGIN MOVER MinMover - minimize_flex=======================
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.pack.pack_rotamers: (23) built 1518 rotamers at 56 positions.
core.pack.interaction_graph.interaction_graph_factory: (23) Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: (2) built 1384 rotamers at 51 positions.
core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (22) IG: 905568 bytes
core.pack.interaction_graph.interaction_graph_factory: (13) IG: 533420 bytes
core.pack.pack_rotamers: (4) built 2017 rotamers at 77 positions.
core.pack.interaction_graph.interaction_graph_factory: (4) Instantiating DensePDInteractionGraph
protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack=======================
protocols.rosetta_scripts.ParsedProtocol: (22) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (22) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (22) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc=======================
core.pack.task: (3) Packer task: initialize from command line() 
core.pack.task: (22) Packer task: initialize from command line() 
core.optimization.LineMinimizer: (5) [ ERROR ] Inaccurate G! step= 8.87878e-09 Deriv= -738369 Finite Diff= -1.52674
core.optimization.Minimizer: (5) Line search failed even after resetting Hessian; aborting at iter#1
protocols.rosetta_scripts.ParsedProtocol: (16) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (16) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (16) =======================BEGIN MOVER PackRotamersMover - repack=======================
protocols.rosetta_scripts.ParsedProtocol: (13) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (13) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (13) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc=======================
core.pack.task: (16) Packer task: initialize from command line() 
core.pack.task: (13) Packer task: initialize from command line() 
core.pack.pack_rotamers: (28) built 2187 rotamers at 85 positions.
core.pack.interaction_graph.interaction_graph_factory: (28) Instantiating DensePDInteractionGraph
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
protocols.rosetta_scripts.ParsedProtocol: (19) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (19) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (19) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (19) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (19) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (19) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (19) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (19) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (19) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (19) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (19) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (19) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (19) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol: (19) =======================BEGIN FILTER =======================
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.pack.pack_rotamers: (14) built 1678 rotamers at 51 positions.
core.pack.interaction_graph.interaction_graph_factory: (14) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (7) IG: 2179000 bytes
core.pack.interaction_graph.interaction_graph_factory: (20) IG: 3150124 bytes
protocols.rosetta_scripts.ParsedProtocol: (19) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (19) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (19) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (19) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (19) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (19) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (19) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (19) ============End report for ==================
core.pack.interaction_graph.interaction_graph_factory: (12) IG: 2518796 bytes
core.optimization.LineMinimizer: (22) [ ERROR ] Inaccurate G! step= 3.8147e-08 Deriv= -0.329699 Finite Diff= 0.0225097
protocols.rosetta_scripts.ParsedProtocol: (5) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (5) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (5) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (5) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (5) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (5) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (5) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (5) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (5) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (5) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (5) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (5) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (5) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol: (5) =======================BEGIN FILTER =======================
core.optimization.LineMinimizer: (8) [ ERROR ] Inaccurate G! step= 9.79457e-07 Deriv= -60.675 Finite Diff= -2.3055
core.optimization.Minimizer: (8) Line search failed even after resetting Hessian; aborting at iter#15
core.optimization.LineMinimizer: (13) [ ERROR ] Inaccurate G! step= 3.8147e-08 Deriv= -0.497129 Finite Diff= 0.186741
protocols.rosetta_scripts.ParsedProtocol: (7) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (7) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (7) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc=======================
core.pack.pack_rotamers: (29) built 1818 rotamers at 62 positions.
core.pack.interaction_graph.interaction_graph_factory: (29) Instantiating DensePDInteractionGraph
protocols.rosetta_scripts.ParsedProtocol: (5) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (5) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (5) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (5) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (5) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (5) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (5) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (5) ============End report for ==================
core.pack.interaction_graph.interaction_graph_factory: (9) IG: 1145540 bytes
protocols.rosetta_scripts.ParsedProtocol: (13) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (13) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (13) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.interaction_graph.interaction_graph_factory: (24) IG: 944992 bytes
core.pack.task: (13) Packer task: initialize from command line() 
core.pack.task: (7) Packer task: initialize from command line() 
protocols.rosetta_scripts.ParsedProtocol: (20) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (20) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (20) =======================BEGIN MOVER AtomTree - set_up_foldtree=======================
protocols.protein_interface_design.movers.SetAtomTree: (20) Applying fold_tree: FOLD_TREE  EDGE 134 1 -1  EDGE 134 314 1  EDGE 314 301 -1  EDGE 313 299 2  EDGE 299 268 -1  EDGE 280 266 3  EDGE 266 243 -1  EDGE 314 344 -1  EDGE 332 346 4  EDGE 346 377 -1  EDGE 365 379 5  EDGE 379 396 -1  EDGE 134 152 -1  EDGE 145 153 6  EDGE 153 180 -1  EDGE 176 182 7  EDGE 182 221 -1  EDGE 216 223 8  EDGE 223 242 -1  EDGE 299 300 -1  EDGE 266 267 -1  EDGE 346 345 -1  EDGE 379 378 -1  EDGE 182 181 -1  EDGE 223 222 -1 
protocols.rosetta_scripts.ParsedProtocol: (22) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (22) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (22) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (22) Packer task: initialize from command line() 
core.pack.interaction_graph.interaction_graph_factory: (30) IG: 1850516 bytes
protocols.rosetta_scripts.ParsedProtocol: (12) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (12) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (20) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (20) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (20) =======================BEGIN MOVER MinMover - minimize_flex=======================
protocols.rosetta_scripts.ParsedProtocol: (12) =======================BEGIN MOVER AtomTree - set_up_foldtree=======================
protocols.protein_interface_design.movers.SetAtomTree: (12) Applying fold_tree: FOLD_TREE  EDGE 134 1 -1  EDGE 134 314 1  EDGE 314 301 -1  EDGE 313 299 2  EDGE 299 268 -1  EDGE 280 266 3  EDGE 266 243 -1  EDGE 314 344 -1  EDGE 332 346 4  EDGE 346 377 -1  EDGE 365 379 5  EDGE 379 396 -1  EDGE 134 152 -1  EDGE 145 153 6  EDGE 153 180 -1  EDGE 176 182 7  EDGE 182 221 -1  EDGE 216 223 8  EDGE 223 242 -1  EDGE 299 300 -1  EDGE 266 267 -1  EDGE 346 345 -1  EDGE 379 378 -1  EDGE 182 181 -1  EDGE 223 222 -1 
protocols.rosetta_scripts.ParsedProtocol: (12) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (12) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (12) =======================BEGIN MOVER MinMover - minimize_flex=======================
protocols.TrialMover: (31) Acceptance rate: 0.56
protocols.simple_moves.GenericMonteCarloMover: (5) Trial number: 94
protocols.simple_moves.GenericMonteCarloMover: (19) Trial number: 24
protocols.rosetta_scripts.ParsedProtocol: (9) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (9) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (9) =======================BEGIN MOVER ParsedProtocol - minimize_interface=======================
protocols.rosetta_scripts.ParsedProtocol: (9) =======================BEGIN MOVER PackRotamersMover - repack=======================
protocols.rosetta_scripts.ParsedProtocol: (5) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb=======================
core.pack.task: (9) Packer task: initialize from command line() 
protocols.rosetta_scripts.ParsedProtocol: (5) =======================BEGIN FILTER =======================
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
protocols.rosetta_scripts.ParsedProtocol: (19) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb=======================
protocols.rosetta_scripts.ParsedProtocol: (19) =======================BEGIN FILTER =======================
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.kinematics.AtomTree: (20) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (20) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (20) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (20) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (20) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (20) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (20) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (20) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
protocols.rosetta_scripts.ParsedProtocol: (19) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (19) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.kinematics.AtomTree: (20) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (20) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (20) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (20) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (20) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (20) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (20) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (20) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (20) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (20) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
protocols.rosetta_scripts.ParsedProtocol: (5) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (5) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (19) Packer task: initialize from command line() 
core.kinematics.AtomTree: (20) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (20) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (20) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (20) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (20) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (20) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
protocols.rosetta_scripts.ParsedProtocol: (24) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (24) =======================END FILTER =======================
core.kinematics.AtomTree: (20) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (20) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (20) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
protocols.rosetta_scripts.ParsedProtocol: (24) =======================BEGIN MOVER AtomTree - set_up_foldtree=======================
protocols.protein_interface_design.movers.SetAtomTree: (24) Applying fold_tree: FOLD_TREE  EDGE 134 1 -1  EDGE 134 314 1  EDGE 314 301 -1  EDGE 313 299 2  EDGE 299 268 -1  EDGE 280 266 3  EDGE 266 243 -1  EDGE 314 344 -1  EDGE 332 346 4  EDGE 346 377 -1  EDGE 365 379 5  EDGE 379 396 -1  EDGE 134 152 -1  EDGE 145 153 6  EDGE 153 180 -1  EDGE 176 182 7  EDGE 182 221 -1  EDGE 216 223 8  EDGE 223 242 -1  EDGE 299 300 -1  EDGE 266 267 -1  EDGE 346 345 -1  EDGE 379 378 -1  EDGE 182 181 -1  EDGE 223 222 -1 
core.kinematics.AtomTree: (20) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (20) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (20) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (20) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (20) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (20) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (20) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (20) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (20) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.pack.task: (5) Packer task: initialize from command line() 
protocols.rosetta_scripts.ParsedProtocol: (24) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (24) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (24) =======================BEGIN MOVER MinMover - minimize_flex=======================
protocols.rosetta_scripts.ParsedProtocol: (30) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (30) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (30) =======================BEGIN MOVER AtomTree - set_up_foldtree=======================
protocols.protein_interface_design.movers.SetAtomTree: (30) Applying fold_tree: FOLD_TREE  EDGE 134 1 -1  EDGE 134 314 1  EDGE 314 301 -1  EDGE 313 299 2  EDGE 299 268 -1  EDGE 280 266 3  EDGE 266 243 -1  EDGE 314 344 -1  EDGE 332 346 4  EDGE 346 377 -1  EDGE 365 379 5  EDGE 379 396 -1  EDGE 134 152 -1  EDGE 145 153 6  EDGE 153 180 -1  EDGE 176 182 7  EDGE 182 221 -1  EDGE 216 223 8  EDGE 223 242 -1  EDGE 299 300 -1  EDGE 266 267 -1  EDGE 346 345 -1  EDGE 379 378 -1  EDGE 182 181 -1  EDGE 223 222 -1 
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
protocols.rosetta_scripts.ParsedProtocol: (11) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (11) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (11) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
protocols.rosetta_scripts.ParsedProtocol: (30) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (30) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (30) =======================BEGIN MOVER MinMover - minimize_flex=======================
core.pack.task: (11) Packer task: initialize from command line() 
core.pack.interaction_graph.interaction_graph_factory: (15) IG: 1237544 bytes
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.pack.interaction_graph.interaction_graph_factory: (26) IG: 3803180 bytes
core.pack.pack_rotamers: (16) built 1502 rotamers at 54 positions.
core.pack.interaction_graph.interaction_graph_factory: (16) Instantiating DensePDInteractionGraph
core.optimization.LineMinimizer: (18) [ ERROR ] Inaccurate G! step= 2.44141e-06 Deriv= -13.4537 Finite Diff= -0.981456
protocols.rosetta_scripts.ParsedProtocol: (8) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (8) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (8) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (8) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (8) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (8) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (8) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (8) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (8) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (8) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (8) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (8) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (8) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol: (8) =======================BEGIN FILTER =======================
core.pack.pack_rotamers: (13) built 738 rotamers at 32 positions.
core.pack.interaction_graph.interaction_graph_factory: (13) Instantiating DensePDInteractionGraph
core.optimization.LineMinimizer: (27) [ ERROR ] Inaccurate G! step= 3.8147e-08 Deriv= -1906.13 Finite Diff= -0.264484
core.pack.pack_rotamers: (22) built 834 rotamers at 32 positions.
core.pack.interaction_graph.interaction_graph_factory: (22) Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: (3) built 2094 rotamers at 80 positions.
core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph
protocols.rosetta_scripts.ParsedProtocol: (26) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (26) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (26) =======================BEGIN MOVER ParsedProtocol - minimize_interface=======================
protocols.rosetta_scripts.ParsedProtocol: (26) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (26) Packer task: initialize from command line() 
core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1710804 bytes
protocols.rosetta_scripts.ParsedProtocol: (8) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (8) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (8) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (8) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (8) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (8) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (8) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (8) ============End report for ==================
core.pack.pack_rotamers: (5) built 668 rotamers at 25 positions.
core.pack.interaction_graph.interaction_graph_factory: (5) Instantiating DensePDInteractionGraph
protocols.rosetta_scripts.ParsedProtocol: (15) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (15) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (15) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc=======================
core.pack.task: (15) Packer task: initialize from command line() 
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc=======================
core.pack.task: (2) Packer task: initialize from command line() 
core.pack.pack_rotamers: (9) built 1164 rotamers at 52 positions.
core.pack.interaction_graph.interaction_graph_factory: (9) Instantiating DensePDInteractionGraph
protocols.simple_moves.GenericMonteCarloMover: (8) Trial number: 36
protocols.rosetta_scripts.ParsedProtocol: (8) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb=======================
protocols.rosetta_scripts.ParsedProtocol: (8) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (8) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (8) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (8) Packer task: initialize from command line() 
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.pack.interaction_graph.interaction_graph_factory: (13) IG: 533420 bytes
core.pack.pack_rotamers: (19) built 1700 rotamers at 58 positions.
core.pack.interaction_graph.interaction_graph_factory: (19) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (23) IG: 1841512 bytes
protocols.TrialMover: (31) Acceptance rate: 0.6
core.pack.interaction_graph.interaction_graph_factory: (5) IG: 616380 bytes
protocols.rosetta_scripts.ParsedProtocol: (23) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (23) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (23) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc=======================
protocols.rosetta_scripts.ParsedProtocol: (13) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (13) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (13) =======================BEGIN MOVER AtomTree - set_up_foldtree=======================
protocols.protein_interface_design.movers.SetAtomTree: (13) Applying fold_tree: FOLD_TREE  EDGE 134 1 -1  EDGE 134 314 1  EDGE 314 301 -1  EDGE 313 299 2  EDGE 299 268 -1  EDGE 280 266 3  EDGE 266 243 -1  EDGE 314 344 -1  EDGE 332 346 4  EDGE 346 377 -1  EDGE 365 379 5  EDGE 379 396 -1  EDGE 134 152 -1  EDGE 145 153 6  EDGE 153 180 -1  EDGE 176 182 7  EDGE 182 221 -1  EDGE 216 223 8  EDGE 223 242 -1  EDGE 299 300 -1  EDGE 266 267 -1  EDGE 346 345 -1  EDGE 379 378 -1  EDGE 182 181 -1  EDGE 223 222 -1 
core.pack.interaction_graph.interaction_graph_factory: (22) IG: 905568 bytes
core.pack.task: (23) Packer task: initialize from command line() 
protocols.rosetta_scripts.ParsedProtocol: (5) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (5) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (5) =======================BEGIN MOVER ParsedProtocol - minimize_interface=======================
protocols.rosetta_scripts.ParsedProtocol: (5) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (5) Packer task: initialize from command line() 
protocols.rosetta_scripts.ParsedProtocol: (13) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (13) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (13) =======================BEGIN MOVER MinMover - minimize_flex=======================
core.pack.pack_rotamers: (11) built 1861 rotamers at 67 positions.
core.pack.interaction_graph.interaction_graph_factory: (11) Instantiating DensePDInteractionGraph
protocols.rosetta_scripts.ParsedProtocol: (22) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (22) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (22) =======================BEGIN MOVER AtomTree - set_up_foldtree=======================
protocols.protein_interface_design.movers.SetAtomTree: (22) Applying fold_tree: FOLD_TREE  EDGE 134 1 -1  EDGE 134 314 1  EDGE 314 301 -1  EDGE 313 299 2  EDGE 299 268 -1  EDGE 280 266 3  EDGE 266 243 -1  EDGE 314 344 -1  EDGE 332 346 4  EDGE 346 377 -1  EDGE 365 379 5  EDGE 379 396 -1  EDGE 134 152 -1  EDGE 145 153 6  EDGE 153 180 -1  EDGE 176 182 7  EDGE 182 221 -1  EDGE 216 223 8  EDGE 223 242 -1  EDGE 299 300 -1  EDGE 266 267 -1  EDGE 346 345 -1  EDGE 379 378 -1  EDGE 182 181 -1  EDGE 223 222 -1 
protocols.rosetta_scripts.ParsedProtocol: (22) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (22) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (22) =======================BEGIN MOVER MinMover - minimize_flex=======================
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.optimization.LineMinimizer: (7) [ ERROR ] Inaccurate G! step= 3.8147e-06 Deriv= -0.636935 Finite Diff= -0.017599
core.pack.pack_rotamers: (5) built 668 rotamers at 25 positions.
core.pack.interaction_graph.interaction_graph_factory: (5) Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: (8) built 1256 rotamers at 48 positions.
core.pack.interaction_graph.interaction_graph_factory: (8) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (14) IG: 2312008 bytes
core.optimization.LineMinimizer: (27) [ ERROR ] Inaccurate G! step= 1.74748e-07 Deriv= -1906.13 Finite Diff= -0.263862
core.optimization.Minimizer: (27) Line search failed even after resetting Hessian; aborting at iter#1
core.pack.pack_rotamers: (26) built 2407 rotamers at 80 positions.
core.pack.interaction_graph.interaction_graph_factory: (26) Instantiating DensePDInteractionGraph
protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (2) Packer task: initialize from command line() 
protocols.rosetta_scripts.ParsedProtocol: (6) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (6) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (6) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (6) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (6) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (6) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (6) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (6) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (6) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (6) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (6) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (6) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (6) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol: (6) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (7) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (7) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (7) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (7) Packer task: initialize from command line() 
core.pack.interaction_graph.interaction_graph_factory: (9) IG: 1143348 bytes
protocols.rosetta_scripts.ParsedProtocol: (21) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (21) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (21) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (21) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (21) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (21) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (21) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (21) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (21) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (21) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (21) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (21) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (21) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol: (21) =======================BEGIN FILTER =======================
core.pack.interaction_graph.interaction_graph_factory: (16) IG: 1825304 bytes
protocols.rosetta_scripts.ParsedProtocol: (14) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (14) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (14) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc=======================
protocols.rosetta_scripts.ParsedProtocol: (23) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (23) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (23) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (14) Packer task: initialize from command line() 
core.pack.task: (23) Packer task: initialize from command line() 
core.pack.interaction_graph.interaction_graph_factory: (4) IG: 2991172 bytes
core.pack.interaction_graph.interaction_graph_factory: (28) IG: 2750092 bytes
core.pack.interaction_graph.interaction_graph_factory: (5) IG: 616380 bytes
protocols.rosetta_scripts.ParsedProtocol: (5) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (5) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (5) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc=======================
core.pack.task: (5) Packer task: initialize from command line() 
protocols.rosetta_scripts.ParsedProtocol: (27) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (27) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (27) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (27) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (27) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (27) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (27) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (27) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (27) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (27) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (27) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (27) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (27) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol: (27) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (9) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (9) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (9) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc=======================
core.pack.task: (9) Packer task: initialize from command line() 
core.optimization.LineMinimizer: (10) [ ERROR ] Inaccurate G! step= 1.90735e-08 Deriv= -87.2739 Finite Diff= -0.588202
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.optimization.LineMinimizer: (24) [ ERROR ] Inaccurate G! step= 3.8147e-08 Deriv= -855417 Finite Diff= -52.7096
core.optimization.LineMinimizer: (15) [ ERROR ] Inaccurate G! step= 4.76837e-07 Deriv= -0.807227 Finite Diff= 3.33013
protocols.rosetta_scripts.ParsedProtocol: (15) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (15) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (15) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (15) Packer task: initialize from command line() 
core.pack.interaction_graph.interaction_graph_factory: (29) IG: 2445288 bytes
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
protocols.rosetta_scripts.ParsedProtocol: (6) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (6) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (6) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (6) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (6) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (6) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (6) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (6) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol: (21) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (21) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (21) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (21) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (21) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (21) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (21) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (21) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol: (27) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (27) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (27) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (27) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (27) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (27) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (27) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (27) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol: (16) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (16) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (16) =======================BEGIN MOVER AtomTree - set_up_foldtree=======================
protocols.protein_interface_design.movers.SetAtomTree: (16) Applying fold_tree: FOLD_TREE  EDGE 134 1 -1  EDGE 134 314 1  EDGE 314 301 -1  EDGE 313 299 2  EDGE 299 268 -1  EDGE 280 266 3  EDGE 266 243 -1  EDGE 314 344 -1  EDGE 332 346 4  EDGE 346 377 -1  EDGE 365 379 5  EDGE 379 396 -1  EDGE 134 152 -1  EDGE 145 153 6  EDGE 153 180 -1  EDGE 176 182 7  EDGE 182 221 -1  EDGE 216 223 8  EDGE 223 242 -1  EDGE 299 300 -1  EDGE 266 267 -1  EDGE 346 345 -1  EDGE 379 378 -1  EDGE 182 181 -1  EDGE 223 222 -1 
core.optimization.LineMinimizer: (20) [ ERROR ] Inaccurate G! step= 3.8147e-08 Deriv= -160630 Finite Diff= -7485.29
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
protocols.TrialMover: (31) Acceptance rate: 0.68
core.optimization.LineMinimizer: (12) [ ERROR ] Inaccurate G! step= 3.8147e-08 Deriv= -71870 Finite Diff= -393.854
core.pack.interaction_graph.interaction_graph_factory: (3) IG: 2407548 bytes
protocols.rosetta_scripts.ParsedProtocol: (16) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (16) =======================END FILTER =======================
core.optimization.LineMinimizer: (14) [ ERROR ] Inaccurate G! step= 3.8147e-08 Deriv= -9.6433 Finite Diff= -0.186273
protocols.rosetta_scripts.ParsedProtocol: (16) =======================BEGIN MOVER MinMover - minimize_flex=======================
protocols.rosetta_scripts.ParsedProtocol: (29) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (29) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (29) =======================BEGIN MOVER ParsedProtocol - minimize_interface=======================
protocols.rosetta_scripts.ParsedProtocol: (29) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (29) Packer task: initialize from command line() 
protocols.rosetta_scripts.ParsedProtocol: (4) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (4) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (4) =======================BEGIN MOVER ParsedProtocol - minimize_interface=======================
protocols.rosetta_scripts.ParsedProtocol: (4) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (4) Packer task: initialize from command line() 
protocols.rosetta_scripts.ParsedProtocol: (28) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (28) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (28) =======================BEGIN MOVER AtomTree - set_up_foldtree=======================
protocols.protein_interface_design.movers.SetAtomTree: (28) Applying fold_tree: FOLD_TREE  EDGE 134 1 -1  EDGE 134 314 1  EDGE 314 301 -1  EDGE 313 299 2  EDGE 299 268 -1  EDGE 280 266 3  EDGE 266 243 -1  EDGE 314 344 -1  EDGE 332 346 4  EDGE 346 377 -1  EDGE 365 379 5  EDGE 379 396 -1  EDGE 134 152 -1  EDGE 145 153 6  EDGE 153 180 -1  EDGE 176 182 7  EDGE 182 221 -1  EDGE 216 223 8  EDGE 223 242 -1  EDGE 299 300 -1  EDGE 266 267 -1  EDGE 346 345 -1  EDGE 379 378 -1  EDGE 182 181 -1  EDGE 223 222 -1 
core.optimization.LineMinimizer: (5) [ ERROR ] Inaccurate G! step= 3.8147e-08 Deriv= -0.2506 Finite Diff= 0.00160933
protocols.rosetta_scripts.ParsedProtocol: (28) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (28) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (28) =======================BEGIN MOVER MinMover - minimize_flex=======================
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER AtomTree - set_up_foldtree=======================
protocols.protein_interface_design.movers.SetAtomTree: (3) Applying fold_tree: FOLD_TREE  EDGE 134 1 -1  EDGE 134 314 1  EDGE 314 301 -1  EDGE 313 299 2  EDGE 299 268 -1  EDGE 280 266 3  EDGE 266 243 -1  EDGE 314 344 -1  EDGE 332 346 4  EDGE 346 377 -1  EDGE 365 379 5  EDGE 379 396 -1  EDGE 134 152 -1  EDGE 145 153 6  EDGE 153 180 -1  EDGE 176 182 7  EDGE 182 221 -1  EDGE 216 223 8  EDGE 223 242 -1  EDGE 299 300 -1  EDGE 266 267 -1  EDGE 346 345 -1  EDGE 379 378 -1  EDGE 182 181 -1  EDGE 223 222 -1 
protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER MinMover - minimize_flex=======================
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (28) [ ERROR ] Noprotocols.rosetta_scripts.ParsedProtocol: (14) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (14) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (14) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (14) Packer task: initialize from command line() 
 proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for tprotocols.rosetta_scripts.ParsedProtocol: (5) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (5) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (5) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (5) Packer task: initialize from command line() 
hese four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
protocols.simple_moves.GenericMonteCarloMover: (6) Trial number: 88
protocols.simple_moves.GenericMonteCarloMover: (27) Trial number: 10
core.pack.pack_rotamers: (2) built 1384 rotamers at 51 positions.
protocols.rosetta_scripts.ParsedProtocol: (6) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb=======================
protocols.rosetta_scripts.ParsedProtocol: (6) =======================BEGIN FILTER =======================
core.pack.interaction_graph.interaction_graph_factory: (2) Instantiating DensePDInteractionGraph
protocols.rosetta_scripts.ParsedProtocol: (27) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb=======================
protocols.rosetta_scripts.ParsedProtocol: (27) =======================BEGIN FILTER =======================
core.pack.pack_rotamers: (15) built 1252 rotamers at 50 positions.
core.pack.interaction_graph.interaction_graph_factory: (15) Instantiating DensePDInteractionGraph
protocols.rosetta_scripts.ParsedProtocol: (27) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (27) =======================BEGIN MOVER PackRotamersMover - repack=======================
protocols.rosetta_scripts.ParsedProtocol: (6) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (6) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (27) Packer task: initialize from command line() 
core.pack.task: (6) Packer task: initialize from command line() 
core.pack.interaction_graph.interaction_graph_factory: (8) IG: 1562864 bytes
core.optimization.LineMinimizer: (9) [ ERROR ] Inaccurate G! step= 3.8147e-08 Deriv= -1.27064 Finite Diff= -0.0772089
protocols.simple_moves.GenericMonteCarloMover: (21) Trial number: 69
protocols.rosetta_scripts.ParsedProtocol: (21) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb=======================
protocols.rosetta_scripts.ParsedProtocol: (21) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (21) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (21) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (21) Packer task: initialize from command line() 
core.pack.pack_rotamers: (23) built 1518 rotamers at 56 positions.
core.pack.interaction_graph.interaction_graph_factory: (23) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (19) IG: 2334424 bytes
core.optimization.LineMinimizer: (10) [ ERROR ] Inaccurate G! step= 2.61275e-07 Deriv= -852.675 Finite Diff= 7.80798
core.optimization.Minimizer: (10) Line search failed even after resetting Hessian; aborting at iter#16
core.pack.pack_rotamers: (7) built 1654 rotamers at 67 positions.
core.pack.interaction_graph.interaction_graph_factory: (7) Instantiating DensePDInteractionGraph
protocols.rosetta_scripts.ParsedProtocol: (9) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (9) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (9) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (9) Packer task: initialize from command line() 
core.pack.pack_rotamers: (5) built 668 rotamers at 25 positions.
core.pack.interaction_graph.interaction_graph_factory: (5) Instantiating DensePDInteractionGraph
protocols.rosetta_scripts.ParsedProtocol: (8) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (8) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (8) =======================BEGIN MOVER ParsedProtocol - minimize_interface=======================
protocols.rosetta_scripts.ParsedProtocol: (8) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.interaction_graph.interaction_graph_factory: (11) IG: 2654424 bytes
core.pack.task: (8) Packer task: initialize from command line() 
protocols.rosetta_scripts.ParsedProtocol: (19) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (19) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (19) =======================BEGIN MOVER ParsedProtocol - minimize_interface=======================
protocols.rosetta_scripts.ParsedProtocol: (19) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (19) Packer task: initialize from command line() 
core.optimization.LineMinimizer: (20) [ ERROR ] Inaccurate G! step= 1.90361e-08 Deriv= -160630 Finite Diff= -7485.43
core.optimization.LineMinimizer: (13) [ ERROR ] Inaccurate G! step= 3.8147e-08 Deriv= -2.08844e+06 Finite Diff= -6.5896
core.optimization.Minimizer: (20) Line search failed even after resetting Hessian; aborting at iter#1
protocols.TrialMover: (31) Acceptance rate: 0.5
core.pack.pack_rotamers: (27) built 1194 rotamers at 37 positions.
core.pack.interaction_graph.interaction_graph_factory: (27) Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: (4) built 2017 rotamers at 77 positions.
core.pack.interaction_graph.interaction_graph_factory: (4) Instantiating DensePDInteractionGraph
core.optimization.LineMinimizer: (24) [ ERROR ] Inaccurate G! step= 8.249e-09 Deriv= -855417 Finite Diff= -53.0654
core.optimization.Minimizer: (24) Line search failed even after resetting Hessian; aborting at iter#1
core.pack.pack_rotamers: (29) built 1818 rotamers at 62 positions.
core.pack.interaction_graph.interaction_graph_factory: (29) Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: (14) built 1678 rotamers at 51 positions.
core.pack.interaction_graph.interaction_graph_factory: (14) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (5) IG: 616380 bytes
core.pack.pack_rotamers: (21) built 1306 rotamers at 55 positions.
core.pack.interaction_graph.interaction_graph_factory: (21) Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: (9) built 1164 rotamers at 52 positions.
core.pack.interaction_graph.interaction_graph_factory: (9) Instantiating DensePDInteractionGraph
protocols.rosetta_scripts.ParsedProtocol: (10) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (10) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (10) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (10) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (10) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (10) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (10) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (10) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (10) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (10) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (10) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (10) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (10) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol: (10) =======================BEGIN FILTER =======================
core.pack.interaction_graph.interaction_graph_factory: (15) IG: 1238152 bytes
protocols.rosetta_scripts.ParsedProtocol: (5) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (5) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (5) =======================BEGIN MOVER AtomTree - set_up_foldtree=======================
protocols.protein_interface_design.movers.SetAtomTree: (5) Applying fold_tree: FOLD_TREE  EDGE 134 1 -1  EDGE 134 314 1  EDGE 314 301 -1  EDGE 313 299 2  EDGE 299 268 -1  EDGE 280 266 3  EDGE 266 243 -1  EDGE 314 344 -1  EDGE 332 346 4  EDGE 346 377 -1  EDGE 365 379 5  EDGE 379 396 -1  EDGE 134 152 -1  EDGE 145 153 6  EDGE 153 180 -1  EDGE 176 182 7  EDGE 182 221 -1  EDGE 216 223 8  EDGE 223 242 -1  EDGE 299 300 -1  EDGE 266 267 -1  EDGE 346 345 -1  EDGE 379 378 -1  EDGE 182 181 -1  EDGE 223 222 -1 
core.pack.pack_rotamers: (6) built 2014 rotamers at 84 positions.
core.pack.interaction_graph.interaction_graph_factory: (6) Instantiating DensePDInteractionGraph
protocols.rosetta_scripts.ParsedProtocol: (11) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (11) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (11) =======================BEGIN MOVER AtomTree - set_up_foldtree=======================
protocols.protein_interface_design.movers.SetAtomTree: (11) Applying fold_tree: FOLD_TREE  EDGE 134 1 -1  EDGE 134 314 1  EDGE 314 301 -1  EDGE 313 299 2  EDGE 299 268 -1  EDGE 280 266 3  EDGE 266 243 -1  EDGE 314 344 -1  EDGE 332 346 4  EDGE 346 377 -1  EDGE 365 379 5  EDGE 379 396 -1  EDGE 134 152 -1  EDGE 145 153 6  EDGE 153 180 -1  EDGE 176 182 7  EDGE 182 221 -1  EDGE 216 223 8  EDGE 223 242 -1  EDGE 299 300 -1  EDGE 266 267 -1  EDGE 346 345 -1  EDGE 379 378 -1  EDGE 182 181 -1  EDGE 223 222 -1 
protocols.rosetta_scripts.ParsedProtocol: (11) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (11) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (11) =======================BEGIN MOVER MinMover - minimize_flex=======================
core.optimization.LineMinimizer: (12) [ ERROR ] Inaccurate G! step= 2.84588e-08 Deriv= -71870 Finite Diff= -393.755
core.optimization.Minimizer: (12) Line search failed even after resetting Hessian; aborting at iter#1
core.optimization.LineMinimizer: (22) [ ERROR ] Inaccurate G! step= 3.8147e-08 Deriv= -3078.28 Finite Diff= -7.59706
protocols.rosetta_scripts.ParsedProtocol: (5) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (10) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (10) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (10) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (10) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (10) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (10) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (10) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (10) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol: (5) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (5) =======================BEGIN MOVER MinMover - minimize_flex=======================
protocols.rosetta_scripts.ParsedProtocol: (15) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (15) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (15) =======================BEGIN MOVER AtomTree - set_up_foldtree=======================
protocols.protein_interface_design.movers.SetAtomTree: (15) Applying fold_tree: FOLD_TREE  EDGE 134 1 -1  EDGE 134 314 1  EDGE 314 301 -1  EDGE 313 299 2  EDGE 299 268 -1  EDGE 280 266 3  EDGE 266 243 -1  EDGE 314 344 -1  EDGE 332 346 4  EDGE 346 377 -1  EDGE 365 379 5  EDGE 379 396 -1  EDGE 134 152 -1  EDGE 145 153 6  EDGE 153 180 -1  EDGE 176 182 7  EDGE 182 221 -1  EDGE 216 223 8  EDGE 223 242 -1  EDGE 299 300 -1  EDGE 266 267 -1  EDGE 346 345 -1  EDGE 379 378 -1  EDGE 182 181 -1  EDGE 223 222 -1 
protocols.rosetta_scripts.ParsedProtocol: (15) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (15) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (15) =======================BEGIN MOVER MinMover - minimize_flex=======================
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (5) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (11) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
protocols.rosetta_scripts.ParsedProtocol: (24) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (24) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (24) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (24) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (24) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (24) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (24) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (24) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (24) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (24) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (24) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (24) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (24) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol: (24) =======================BEGIN FILTER =======================
core.pack.pack_rotamers: (8) built 1256 rotamers at 48 positions.
core.pack.interaction_graph.interaction_graph_factory: (8) Instantiating DensePDInteractionGraph
core.optimization.LineMinimizer: (28) [ ERROR ] Inaccurate G! step= 3.8147e-08 Deriv= -304671 Finite Diff= -761.657
core.pack.interaction_graph.interaction_graph_factory: (2) IG: 1710804 bytes
protocols.rosetta_scripts.ParsedProtocol: (24) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (24) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (24) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (24) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (24) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (24) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (24) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (24) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol: (20) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (20) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (20) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (20) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (20) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (20) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (20) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (20) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (20) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (20) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (20) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (20) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (20) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol: (20) =======================BEGIN FILTER =======================
core.pack.pack_rotamers: (19) built 1700 rotamers at 58 positions.
core.pack.interaction_graph.interaction_graph_factory: (19) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (23) IG: 1841512 bytes
protocols.rosetta_scripts.ParsedProtocol: (12) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (12) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (12) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (12) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (12) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (12) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (12) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (12) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (12) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (12) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (12) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (12) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (12) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol: (12) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER AtomTree - set_up_foldtree=======================
protocols.protein_interface_design.movers.SetAtomTree: (2) Applying fold_tree: FOLD_TREE  EDGE 134 1 -1  EDGE 134 314 1  EDGE 314 301 -1  EDGE 313 299 2  EDGE 299 268 -1  EDGE 280 266 3  EDGE 266 243 -1  EDGE 314 344 -1  EDGE 332 346 4  EDGE 346 377 -1  EDGE 365 379 5  EDGE 379 396 -1  EDGE 134 152 -1  EDGE 145 153 6  EDGE 153 180 -1  EDGE 176 182 7  EDGE 182 221 -1  EDGE 216 223 8  EDGE 223 242 -1  EDGE 299 300 -1  EDGE 266 267 -1  EDGE 346 345 -1  EDGE 379 378 -1  EDGE 182 181 -1  EDGE 223 222 -1 
protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (2) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (2) =======================BEGIN MOVER MinMover - minimize_flex=======================
core.pack.interaction_graph.interaction_graph_factory: (8) IG: 1562864 bytes
core.pack.interaction_graph.interaction_graph_factory: (7) IG: 2179000 bytes
core.pack.interaction_graph.interaction_graph_factory: (21) IG: 1149568 bytes
protocols.rosetta_scripts.ParsedProtocol: (21) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (21) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (21) =======================BEGIN MOVER ParsedProtocol - minimize_interface=======================
protocols.rosetta_scripts.ParsedProtocol: (21) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (21) Packer task: initialize from command line() 
protocols.rosetta_scripts.ParsedProtocol: (12) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (12) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (12) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (12) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (12) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (12) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (12) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (12) ============End report for ==================
protocols.simple_moves.GenericMonteCarloMover: (12) Trial number: 77
core.pack.interaction_graph.interaction_graph_factory: (14) IG: 2312008 bytes
core.pack.interaction_graph.interaction_graph_factory: (29) IG: 2445288 bytes
core.pack.interaction_graph.interaction_graph_factory: (26) IG: 3803180 bytes
protocols.simple_moves.GenericMonteCarloMover: (10) Trial number: 3
protocols.rosetta_scripts.ParsedProtocol: (23) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (23) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (23) =======================BEGIN MOVER AtomTree - set_up_foldtree=======================
protocols.protein_interface_design.movers.SetAtomTree: (23) Applying fold_tree: FOLD_TREE  EDGE 134 1 -1  EDGE 134 314 1  EDGE 314 301 -1  EDGE 313 299 2  EDGE 299 268 -1  EDGE 280 266 3  EDGE 266 243 -1  EDGE 314 344 -1  EDGE 332 346 4  EDGE 346 377 -1  EDGE 365 379 5  EDGE 379 396 -1  EDGE 134 152 -1  EDGE 145 153 6  EDGE 153 180 -1  EDGE 176 182 7  EDGE 182 221 -1  EDGE 216 223 8  EDGE 223 242 -1  EDGE 299 300 -1  EDGE 266 267 -1  EDGE 346 345 -1  EDGE 379 378 -1  EDGE 182 181 -1  EDGE 223 222 -1 
protocols.rosetta_scripts.ParsedProtocol: (23) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (23) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (23) =======================BEGIN MOVER MinMover - minimize_flex=======================
core.optimization.LineMinimizer: (28) [ ERROR ] Inaccurate G! step= 1.38221e-08 Deriv= -304671 Finite Diff= -761.641
core.optimization.Minimizer: (28) Line search failed even after resetting Hessian; aborting at iter#1
core.pack.interaction_graph.interaction_graph_factory: (27) IG: 1455480 bytes
protocols.rosetta_scripts.ParsedProtocol: (27) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (27) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (27) =======================BEGIN MOVER ParsedProtocol - minimize_interface=======================
protocols.rosetta_scripts.ParsedProtocol: (27) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.optimization.LineMinimizer: (16) [ ERROR ] Inaccurate G! step= 6.10352e-07 Deriv= -152135 Finite Diff= -16.506
core.optimization.LineMinimizer: (22) [ ERROR ] Inaccurate G! step= 1.3751e-07 Deriv= -3078.28 Finite Diff= -7.61276
core.optimization.Minimizer: (22) Line search failed even after resetting Hessian; aborting at iter#1
core.pack.interaction_graph.interaction_graph_factory: (9) IG: 1143348 bytes
protocols.rosetta_scripts.ParsedProtocol: (9) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (9) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (9) =======================BEGIN MOVER AtomTree - set_up_foldtree=======================
protocols.protein_interface_design.movers.SetAtomTree: (9) Applying fold_tree: FOLD_TREE  EDGE 134 1 -1  EDGE 134 314 1  EDGE 314 301 -1  EDGE 313 299 2  EDGE 299 268 -1  EDGE 280 266 3  EDGE 266 243 -1  EDGE 314 344 -1  EDGE 332 346 4  EDGE 346 377 -1  EDGE 365 379 5  EDGE 379 396 -1  EDGE 134 152 -1  EDGE 145 153 6  EDGE 153 180 -1  EDGE 176 182 7  EDGE 182 221 -1  EDGE 216 223 8  EDGE 223 242 -1  EDGE 299 300 -1  EDGE 266 267 -1  EDGE 346 345 -1  EDGE 379 378 -1  EDGE 182 181 -1  EDGE 223 222 -1 
protocols.rosetta_scripts.ParsedProtocol: (9) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (9) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (9) =======================BEGIN MOVER MinMover - minimize_flex=======================
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.core.optimization.LineMinimizer: (13) [ ERROR ] Inaccurate G! step= 5.27934e-09 Deriv= -2.08844e+06 Finite Diff= -6.16553
core.optimization.Minimizer: (13) Line search failed even after resetting Hessian; aborting at iter#1
kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
protocols.TrialMover: (31) Acceptance rate: 0.16
core.pack.interaction_graph.interaction_graph_factory: (6) IG: 2760396 bytes
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (2) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.pack.interaction_graph.interaction_graph_factory: (4) IG: 2990676 bytes
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (23) [ ERROR ] Noprotocols.rosetta_scripts.ParsedProtocol: (6) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (6) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (6) =======================BEGIN MOVER ParsedProtocol - minimize_interface=======================
protocols.rosetta_scripts.ParsedProtocol: (6) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (6) Packer task: initialize from command line() 
protocols.rosetta_scripts.ParsedProtocol: (8) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (8) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (8) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc=======================
core.pack.task: (8) Packer task: initialize from command line() 
protocols.simple_moves.GenericMonteCarloMover: (24) Trial number: 60
protocols.rosetta_scripts.ParsedProtocol: (24) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb=======================
protocols.rosetta_scripts.ParsedProtocol: (24) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (14) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (14) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (14) =======================BEGIN MOVER AtomTree - set_up_foldtree=======================
protocols.protein_interface_design.movers.SetAtomTree: (14) Applying fold_tree: FOLD_TREE  EDGE 134 1 -1  EDGE 134 314 1  EDGE 314 301 -1  EDGE 313 299 2  EDGE 299 268 -1  EDGE 280 266 3  EDGE 266 243 -1  EDGE 314 344 -1  EDGE 332 346 4  EDGE 346 377 -1  EDGE 365 379 5  EDGE 379 396 -1  EDGE 134 152 -1  EDGE 145 153 6  EDGE 153 180 -1  EDGE 176 182 7  EDGE 182 221 -1  EDGE 216 223 8  EDGE 223 242 -1  EDGE 299 300 -1  EDGE 266 267 -1  EDGE 346 345 -1  EDGE 379 378 -1  EDGE 182 181 -1  EDGE 223 222 -1 
protocols.rosetta_scripts.ParsedProtocol: (14) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (14) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (14) =======================BEGIN MOVER MinMover - minimize_flex=======================
protocols.rosetta_scripts.ParsedProtocol: (10) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb=======================
protocols.rosetta_scripts.ParsedProtocol: (10) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (10) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (10) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (10) Packer task: initialize from command line() 
core.pack.task: (27) Packer task: initialize from command line() 
 proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (23) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
protocols.rosetta_scripts.ParsedProtocol: (20) =======================END FILTER =======================
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
protocols.rosetta_scripts.ParsedProtocol: (24) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (24) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (24) Packer task: initialize from command line() 
protocols.rosetta_scripts.ParsedProtocol: (29) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (29) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (29) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc=======================
protocols.rosetta_scripts.ParsedProtocol: (12) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb=======================
protocols.rosetta_scripts.ParsedProtocol: (12) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (20) setting status to success
core.pack.task: (29) Packer task: initialize from command line() 
protocols.rosetta_scripts.ParsedProtocol.REPORT: (20) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (20) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (20) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (20) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (20) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (20) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol: (12) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (12) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (12) Packer task: initialize from command line() 
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.optimization.LineMinimizer: (29) [ ERROR ] Inaccurate G! step= 3.8147e-08 Deriv= -0.924708 Finite Diff= -0.0511199
protocols.rosetta_scripts.ParsedProtocol: (29) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (29) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (29) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (29) Packer task: initialize from command line() 
core.optimization.LineMinimizer: (9) [ ERROR ] Inaccurate G! step= 3.8147e-08 Deriv= -5354.06 Finite Diff= -43.3417
core.optimization.LineMinimizer: (30) [ ERROR ] Inaccurate G! step= 9.53674e-09 Deriv= -547.497 Finite Diff= 0.162923
protocols.rosetta_scripts.ParsedProtocol: (28) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (28) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (28) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (28) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (28) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (28) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (28) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (28) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (28) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (28) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (28) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (28) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (28) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol: (28) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (28) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (28) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (28) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (28) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (28) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (28) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (28) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (28) ============End report for ==================
core.optimization.LineMinimizer: (16) [ ERROR ] Inaccurate G! step= 4.31707e-09 Deriv= -3.12322e+06 Finite Diff= -2.53546
core.optimization.Minimizer: (16) Line search failed even after resetting Hessian; aborting at iter#4
protocols.rosetta_scripts.ParsedProtocol: (22) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (22) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (22) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (22) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (22) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (22) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (22) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (22) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (22) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (22) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (22) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (22) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (22) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol: (22) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (13) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (13) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (13) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (13) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (13) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (13) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (13) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (13) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (13) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (13) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (13) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (13) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (13) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol: (13) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (13) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (13) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (13) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (13) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (13) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (13) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (13) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (13) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol: (25) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (25) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (25) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (25) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (25) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (25) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (25) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (25) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (25) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (25) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (25) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (25) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (25) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol: (25) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (25) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (25) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (25) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (25) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (25) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (25) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (25) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (25) ============End report for ==================
core.optimization.LineMinimizer: (5) [ ERROR ] Inaccurate G! step= 3.8147e-08 Deriv= -738381 Finite Diff= -4.32418
core.optimization.LineMinimizer: (5) [ ERROR ] Inaccurate G! step= 8.87871e-09 Deriv= -738381 Finite Diff= -4.0439
core.optimization.Minimizer: (5) Line search failed even after resetting Hessian; aborting at iter#1
protocols.rosetta_scripts.ParsedProtocol: (5) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (5) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (5) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (5) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (5) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (5) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (5) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (5) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (5) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (5) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (5) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (5) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (5) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol: (5) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (5) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (5) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (5) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (5) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (5) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (5) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (5) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (5) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol: (8) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (8) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (8) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (8) Packer task: initialize from command line() 
core.pack.pack_rotamers: (8) built 1256 rotamers at 48 positions.
core.pack.interaction_graph.interaction_graph_factory: (8) Instantiating DensePDInteractionGraph
core.optimization.LineMinimizer: (11) [ ERROR ] Inaccurate G! step= 1.2207e-06 Deriv= -311.129 Finite Diff= 44.1196
core.optimization.LineMinimizer: (15) [ ERROR ] Inaccurate G! step= 3.05176e-07 Deriv= -332.551 Finite Diff= -23.9084
core.optimization.LineMinimizer: (9) [ ERROR ] Inaccurate G! step= 1.04267e-07 Deriv= -5354.06 Finite Diff= -43.3352
core.optimization.Minimizer: (9) Line search failed even after resetting Hessian; aborting at iter#1
protocols.rosetta_scripts.ParsedProtocol: (9) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (9) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (9) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (9) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (9) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (9) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (9) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (9) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (9) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (9) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (9) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (9) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (9) ============End report for ==================
core.optimization.LineMinimizer: (30) [ ERROR ] Inaccurate G! step= 5.39283e-08 Deriv= -20014.6 Finite Diff= -0.690853
core.optimization.Minimizer: (30) Line search failed even after resetting Hessian; aborting at iter#16
core.optimization.LineMinimizer: (23) [ ERROR ] Inaccurate G! step= 3.8147e-08 Deriv= -419659 Finite Diff= -58.8082
protocols.rosetta_scripts.ParsedProtocol: (9) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (9) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (9) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (9) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (9) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (9) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (9) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (9) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (9) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol: (26) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (26) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (26) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc=======================
core.pack.task: (26) Packer task: initialize from command line() 
protocols.simple_moves.GenericMonteCarloMover: (13) Trial number: 88
protocols.rosetta_scripts.ParsedProtocol: (13) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb=======================
protocols.rosetta_scripts.ParsedProtocol: (13) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (13) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (13) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (13) Packer task: initialize from command line() 
protocols.rosetta_scripts.ParsedProtocol: (7) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (7) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (7) =======================BEGIN MOVER AtomTree - set_up_foldtree=======================
protocols.protein_interface_design.movers.SetAtomTree: (7) Applying fold_tree: FOLD_TREE  EDGE 134 1 -1  EDGE 134 314 1  EDGE 314 301 -1  EDGE 313 299 2  EDGE 299 268 -1  EDGE 280 266 3  EDGE 266 243 -1  EDGE 314 344 -1  EDGE 332 346 4  EDGE 346 377 -1  EDGE 365 379 5  EDGE 379 396 -1  EDGE 134 152 -1  EDGE 145 153 6  EDGE 153 180 -1  EDGE 176 182 7  EDGE 182 221 -1  EDGE 216 223 8  EDGE 223 242 -1  EDGE 299 300 -1  EDGE 266 267 -1  EDGE 346 345 -1  EDGE 379 378 -1  EDGE 182 181 -1  EDGE 223 222 -1 
protocols.rosetta_scripts.ParsedProtocol: (7) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (7) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (7) =======================BEGIN MOVER MinMover - minimize_flex=======================
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (7) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
protocols.rosetta_scripts.ParsedProtocol: (30) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (30) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (30) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (30) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (30) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (30) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (30) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (30) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (30) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (30) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (30) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (30) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (30) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol: (30) =======================BEGIN FILTER =======================
protocols.simple_moves.GenericMonteCarloMover: (28) Trial number: 23
protocols.simple_moves.GenericMonteCarloMover: (9) Trial number: 43
protocols.simple_moves.GenericMonteCarloMover: (5) Trial number: 95
protocols.simple_moves.GenericMonteCarloMover: (25) Trial number: 48
protocols.rosetta_scripts.ParsedProtocol: (28) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb=======================
protocols.rosetta_scripts.ParsedProtocol: (28) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (28) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (28) =======================BEGIN MOVER PackRotamersMover - repack=======================
protocols.rosetta_scripts.ParsedProtocol: (9) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb=======================
protocols.rosetta_scripts.ParsedProtocol: (9) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (9) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (9) =======================BEGIN MOVER PackRotamersMover - repack=======================
protocols.rosetta_scripts.ParsedProtocol: (4) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (4) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (4) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc=======================
core.pack.task: (4) Packer task: initialize from command line() 
core.pack.task: (28) Packer task: initialize from command line() 
protocols.rosetta_scripts.ParsedProtocol: (18) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (18) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (18) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (18) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (18) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (18) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (18) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (18) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (18) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (18) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (18) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (18) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (18) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol: (18) =======================BEGIN FILTER =======================
core.pack.task: (9) Packer task: initialize from command line() 
core.pack.pack_rotamers: (13) built 856 rotamers at 35 positions.
core.pack.interaction_graph.interaction_graph_factory: (13) Instantiating DensePDInteractionGraph
--------------------------------------------------------------------------
WARNING: A process refused to die!

Host: fra32d
PID:  16137

This process may still be running and/or consuming resources.

--------------------------------------------------------------------------
protocols.rosetta_scripts.ParsedProtocol: (5) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb=======================
protocols.rosetta_scripts.ParsedProtocol: (5) =======================BEGIN FILTER =======================
[fra32d:16134] 4 more processes have sent help message help-odls-default.txt / odls-default:could-not-kill
[fra32d:16134] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
protocols.rosetta_scripts.ParsedProtocol: (5) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (5) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (5) Packer task: initialize from command line() 
core.pack.pack_rotamers: (5) built 642 rotamers at 21 positions.
core.pack.interaction_graph.interaction_graph_factory: (5) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (5) IG: 595668 bytes
protocols.rosetta_scripts.ParsedProtocol: (5) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (5) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (5) =======================BEGIN MOVER ParsedProtocol - minimize_interface=======================
protocols.rosetta_scripts.ParsedProtocol: (5) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (5) Packer task: initialize from command line() 
core.pack.pack_rotamers: (5) built 642 rotamers at 21 positions.
core.pack.interaction_graph.interaction_graph_factory: (5) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (5) IG: 595668 bytes
core.pack.interaction_graph.interaction_graph_factory: (13) IG: 661936 bytes
protocols.rosetta_scripts.ParsedProtocol: (13) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (13) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (13) =======================BEGIN MOVER ParsedProtocol - minimize_interface=======================
protocols.rosetta_scripts.ParsedProtocol: (13) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (13) Packer task: initialize from command line() 
core.pack.pack_rotamers: (13) built 856 rotamers at 35 positions.
core.pack.interaction_graph.interaction_graph_factory: (13) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (13) IG: 661936 bytes
protocols.rosetta_scripts.ParsedProtocol: (13) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (13) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (13) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc=======================
core.pack.task: (13) Packer task: initialize from command line() 
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
protocols.rosetta_scripts.ParsedProtocol: (13) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (13) =======================END FILTER =protocols.rosetta_scripts.ParsedProtocol: (18) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (18) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (18) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (18) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (18) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (18) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (18) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (18) ============End report for ==================
protocols.simple_moves.GenericMonteCarloMover: (18) Trial number: 63
protocols.rosetta_scripts.ParsedProtocol: (18) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb=======================
protocols.rosetta_scripts.ParsedProtocol: (18) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (18) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (18) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (18) Packer task: initialize from command line() 
core.pack.pack_rotamers: (18) built 2600 rotamers at 88 positions.
core.pack.interaction_graph.interaction_graph_factory: (18) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (18) IG: 4396824 bytes
protocols.rosetta_scripts.ParsedProtocol: (18) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (18) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (18) =======================BEGIN MOVER ParsedProtocol - minimize_interface=======================
protocols.rosetta_scripts.ParsedProtocol: (18) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (18) Packer task: initialize from command line() 
core.pack.pack_rotamers: (18) built 2600 rotamers at 88 positions.
core.pack.interaction_graph.interaction_graph_factory: (18) Instantiating DensePDInteractionGraph
core.kinematics.AtomTree: (4) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (4) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (4) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (4) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (4) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (4) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (4) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (4) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (4) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (4) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (4) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (4) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (4) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (4) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (4) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (4) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (4) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (4) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
protocols.rosetta_scripts.ParsedProtocol: (4) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (4) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (4) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (4) Packer task: initialize from command line() 
core.pack.pack_rotamers: (10) built 2467 rotamers at 90 positions.
core.pack.interaction_graph.interaction_graph_factory: (10) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (10) IG: 3467636 bytes
protocols.rosetta_scripts.ParsedProtocol: (10) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (10) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (10) =======================BEGIN MOVER ParsedProtocol - minimize_interface=======================
protocols.rosetta_scripts.ParsedProtocol: (10) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (10) Packer task: initialize from command line() 
core.pack.pack_rotamers: (10) built 2467 rotamers at 90 positions.
core.pack.interaction_graph.interaction_graph_factory: (10) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (10) IG: 3461756 bytes
protocols.rosetta_scripts.ParsedProtocol: (10) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (10) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (10) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc=======================
core.pack.task: (10) Packer task: initialize from command line() 
core.kinematics.AtomTree: (10) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (10) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (10) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (10) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (10) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (10) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (10) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (10) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (10) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (10) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (10) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (10) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (10) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (10) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (10) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (10) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (10) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (10) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
protocols.rosetta_scripts.ParsedProtocol: (30) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (30) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (30) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (30) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (30) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (30) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (30) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (30) ============End report for ==================
protocols.simple_moves.GenericMonteCarloMover: (30) Trial number: 73
protocols.rosetta_scripts.ParsedProtocol: (30) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb=======================
protocols.rosetta_scripts.ParsedProtocol: (30) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (30) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (30) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (30) Packer task: initialize from command line() 
core.pack.pack_rotamers: (30) built 931 rotamers at 38 positions.
core.pack.interaction_graph.interaction_graph_factory: (30) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (30) IG: 918396 bytes
protocols.rosetta_scripts.ParsedProtocol: (30) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (30) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (30) =======================BEGIN MOVER ParsedProtocol - minimize_interface=======================
protocols.rosetta_scripts.ParsedProtocol: (30) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (30) Packer task: initialize from command line() 
core.pack.pack_rotamers: (30) built 931 rotamers at 38 positions.
core.pack.interaction_graph.interaction_graph_factory: (30) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (30) IG: 918396 bytes
protocols.rosetta_scripts.ParsedProtocol: (30) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (30) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (30) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc=======================
core.pack.task: (30) Packer task: initialize from command line() 
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (30) protocols.rosetta_scripts.ParsedProtocol: (16) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (16) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (16) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (16) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (16) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (16) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (16) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (16) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (16) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (16) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (16) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (16) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (16) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol: (16) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (16) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (16) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (16) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (16) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (16) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (16) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (16) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (16) ============End report for ==================
protocols.simple_moves.GenericMonteCarloMover: (16) Trial number: 13
protocols.rosetta_scripts.ParsedProtocol: (16) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb=======================
protocols.rosetta_scripts.ParsedProtocol: (16) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (16) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (16) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (16) Packer task: initialize from command line() 
core.pack.pack_rotamers: (16) built 1604 rotamers at 53 positions.
core.pack.interaction_graph.interaction_graph_factory: (16) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (16) IG: 1994240 bytes
protocols.rosetta_scripts.ParsedProtocol: (16) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (16) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (16) =======================BEGIN MOVER ParsedProtocol - minimize_interface=======================
protocols.rosetta_scripts.ParsedProtocol: (16) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (16) Packer task: initialize from command line() 
core.pack.pack_rotamers: (16) built 1604 rotamers at 53 positions.
core.pack.interaction_graph.interaction_graph_factory: (16) Instantiating DensePDInteractionGraph
core.pack.interaction_gprotocols.rosetta_scripts.ParsedProtocol: (22) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (22) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (22) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (22) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (22) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (22) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (22) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (22) ============End report for ==================
protocols.simple_moves.GenericMonteCarloMover: (22) Trial number: 33
protocols.rosetta_scripts.ParsedProtocol: (22) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb=======================
protocols.rosetta_scripts.ParsedProtocol: (22) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (22) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (22) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (22) Packer task: initialize from command line() 
core.pack.pack_rotamers: (22) built 380 rotamers at 24 positions.
core.pack.interaction_graph.interaction_graph_factory: (22) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (22) IG: 195616 bytes
protocols.rosetta_scripts.ParsedProtocol: (22) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (22) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (22) =======================BEGIN MOVER ParsedProtocol - minimize_interface=======================
protocols.rosetta_scripts.ParsedProtocol: (22) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (22) Packer task: initialize from command line() 
core.pack.pack_rotamers: (22) built 380 rotamers at 24 positions.
core.pack.interaction_graph.interaction_graph_factory: (22) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (22) IG: 194132 bytes
protocols.rosetta_scripts.ParsedProtocol: (22) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (22) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (22) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc=======================
core.pack.task: (22) Packer task: initialize from command line() 
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (22) core.pack.pack_rotamers: (27) built 1194 rotamers at 37 positions.
core.pack.interaction_graph.interaction_graph_factory: (27) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (27) IG: 1455480 bytes
protocols.rosetta_scripts.ParsedProtocol: (27) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (27) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (27) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc=======================
core.pack.task: (27) Packer task: initialize from command line() 
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
protocols.rosetta_scripts.ParsedProtocol: (27) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (27) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (27) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (27) Packer task: initialize from command line() 
core.pack.pack_rotamers: (27) built 1194 rotamers at 37 positions.
core.pack.interaction_graph.interaction_graph_factory: (27) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (27) IG: 1455480 bytes
protocols.rosetta_scripts.ParsedProtocol: (27) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (27) core.pack.pack_rotamers: (6) built 2014 rotamers at 84 positions.
core.pack.interaction_graph.interaction_graph_factory: (6) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (6) IG: 2758524 bytes
protocols.rosetta_scripts.ParsedProtocol: (6) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (6) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (6) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc=======================
core.pack.task: (6) Packer task: initialize from command line() 
core.kinematics.AtomTree: (6) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (6) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (6) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (6) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (6) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (6) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (6) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (6) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (6) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (6) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (6) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (6) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (6) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (6) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (6) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (6) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (6) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (6) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.pack.pack_rotamers: (9) built 942 rotamers at 49 positions.
core.pack.interaction_graph.interaction_graph_factory: (9) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (9) IG: 844876 bytes
protocols.rosetta_scripts.ParsedProtocol: (9) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (9) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (9) =======================BEGIN MOVER ParsedProtocol - minimize_interface=======================
protocols.rosetta_scripts.ParsedProtocol: (9) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (9) Packer task: initialize from command line() 
core.pack.pack_rotamers: (9) built 942 rotamers at 49 positions.
core.pack.interaction_graph.interaction_graph_factory: (9) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (9) IG: 844876 bytes
protocols.rosetta_scripts.ParsedProtocol: (9) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (9) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (9) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc=======================
core.pack.task: (9) Packer task: initialize from command line() 
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.optimization.LineMinimizer: (9) [ ERcore.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.optimization.LineMinimizer: (26) [ ERROR ] Inaccurate G! step= 3.8147e-06 Deriv= -0.251078 Finite Diff= 0.0110957
protocols.rosetta_scripts.ParsedProtocol: (26) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (26) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (26) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (26) Packer task: initialize from command line() 
core.pack.pack_rotamers: (26) built 2407 rotamers at 80 positions.
core.pack.interaction_graph.interaction_graph_factory: (26) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (26) IG: 3803180 bytes
protocols.rosetta_scripts.ParsedProtocol: (26) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (26) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (26) =======================BEGIN MOVER AtomTree - set_up_foldtree=======================
protocols.protein_interface_design.movers.SetAtomTree: (26) Applying fold_tree: FOLD_TREE  EDGE 134 1 -1  EDGE 134 314 1  EDGE 314 301 -1  EDGE 313 299 2  EDGE 299 268 -1  EDGE 280 266 3  EDGE 266 243 -1  EDGE 314 344 -1  EDGE 332 346 4  EDGE 346 377 -1  EDGE 365 379 5  EDGE 379 396 -1  EDGE 134 152 -1  EDGE 145 153 6  EDGE 153 180 -1  EDGE 176 182 7  EDGE core.pack.pack_rotamers: (21) built 1306 rotamers at 55 positions.
core.pack.interaction_graph.interaction_graph_factory: (21) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (21) IG: 1149568 bytes
protocols.rosetta_scripts.ParsedProtocol: (21) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (21) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (21) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc=======================
core.pack.task: (21) Packer task: initialize from command line() 
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.optimization.LineMinimizer: (21) [ ERROR ] Inaccurate G! step= 3.8147e-06 Deriv= -0.629771 Finite Diff= 0.111529
protocols.rosetta_scripts.ParsedProtocol: (21) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (21) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (21) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (21) Packer task: initialize from command line() 
core.pack.pack_rotamers: (21) built 1306 rotamers at 55 positions.
core.pack.interaction_graph.interaction_graph_factory: (21) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (21) IG: 1150048 bytes
protocols.rosetta_core.pack.pack_rotamers: (12) built 1665 rotamers at 63 positions.
core.pack.interaction_graph.interaction_graph_factory: (12) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (12) IG: 2304616 bytes
protocols.rosetta_scripts.ParsedProtocol: (12) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (12) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (12) =======================BEGIN MOVER ParsedProtocol - minimize_interface=======================
protocols.rosetta_scripts.ParsedProtocol: (12) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (12) Packer task: initialize from command line() 
core.pack.pack_rotamers: (12) built 1665 rotamers at 63 positions.
core.pack.interaction_graph.interaction_graph_factory: (12) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (12) IG: 2304616 bytes
protocols.rosetta_scripts.ParsedProtocol: (12) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (12) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (12) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc=======================
core.pack.task: (12) Packer task: initialize from command line() 
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (12) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.optimizationprotocols.simple_moves.GenericMonteCarloMover: (20) Lower score sampled: trial=  100, score(current/last_accepted/best)=    2.650/   -4.861/   -7.533
protocols.simple_moves.GenericMonteCarloMover: (20) mover=ParsedProtocol   Score_eval=ScoreXXX         trials=   100;  accepts=  0.410;  energy_gap/trial=   -2.949
protocols.simple_moves.GenericMonteCarloMover: (20) Number of rejections per filter: 0   
protocols.simple_moves.GenericMonteCarloMover: (20) Finished MC. Out of 100 41 accepted  and 59 rejected.
protocols.rosetta_scripts.ParsedProtocol: (20) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (20) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (20) =======================BEGIN MOVER NullMover - NULL_MOVER=======================
protocols.rosetta_scripts.ParsedProtocol: (20) =======================BEGIN FILTER ddg=======================
protocols.rosetta_scripts.ParsedProtocol: (20) =======================END FILTER ddg=======================
protocols.rosetta_scripts.ParsedProtocol: (20) =======================BEGIN MOVER NullMover - NULL_MOVER=======================
protocols.rosetta_scripts.ParsedProtocol: (20) =======================BEGIN FILTER sasa=======================
protocols.rosetta_scripts.ParsedProtocol: (20) =======================END FILTER sasa=======================
protocols.rosetta_scripts.ParsedProtocol: (20) setting status to success
core.pack.task: (20) Packer task: initialize from command line() 
core.pack.pack_rotamers: (20) built 908 rotamers at 31 positions.
core.pack.interaction_graph.interaction_graph_factory: (20) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (20) IG: 722020 bytes
protocols.moves.RigidBodyMover: (20) Translate: Jump (before): RT 0.8201 0.571437 0.0299406 -0.457527 0.686248 -0.565449 -0.343665 0.450026 0.824239 0.991304 -30.6221 -6.11222  
protocols.moves.RigidBodyMover: (20) Translate: Jump (after):  RT 0.8201 0.571437 0.0299406 -0.457527 0.686248 -0.565449 -0.343665 0.450026 0.824239 71.8702 -1012.54 -181.633  
core.pack.pack_rotamers: (20) built 484 rotamers at 31 positions.
core.pack.interaction_graph.interaction_graph_factory: (20) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (20) IG: 141444 bytes
protocols.simple_filters.DdgFilter: (20) -----------------------------------------
 Scores                       Wghtd.Score
-----------------------------------------
 fa_atr                     -43.046
 fa_rep                      35.144
 fa_sol                      33.627
 fa_intra_rep                 0.055
 fa_intra_sol_xover4          4.015
 lk_ball_wtd                 -0.124
 fa_elec                     -5.362
 hbond_sr_bb                  0.000
 hbond_lr_bb                  0.000
 hbond_bb_sc                  2.133
 hbond_sc                    -5.927
 omega                        0.000
 fa_dun                      18.745
 p_aa_pp                      0.000
 yhh_planarity                0.000
 ref                          0.000
 rama_prepro                  0.000
-----------------------------------------
Sum ddg: 39.2593
protocols.simple_filters.DdgFilter: (20) 39.2593, 
 average value: 39.2593
protocols.moves.RigidBodyMover: (20) Translate: Jump (before): RT 0.8201 0.571437 0.0299406 -0.457527 0.686248 -0.565449 -0.343665 0.450026 0.824239 0.991304 -30.6221 -6.11222  
protocols.moves.RigidBodyMover: (20) Translate: Jump (after):  RT 0.8201 0.571437 0.0299406 -0.457527 0.686248 -0.565449 -0.343665 0.450026 0.824239 71.8702 -1012.54 -181.633  
protocols.rosetta_scripts.ParsedProtocol.REPORT: (20) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (20) ============End report for ==================
protocore.optimization.LineMinimizer: (17) [ ERROR ] Inaccurate G! step= 5.82077e-11 Deriv= -18.5321 Finite Diff= 0.972656
protocols.rosetta_scripts.ParsedProtocol: (17) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (17) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (17) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (17) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (17) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (17) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (17) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (17) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (17) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (17) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (17) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (17) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (17) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol: (17) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (17) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (17) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (17) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (17) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (17) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (17) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (17) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (17) ============End report for ==================
protocols.simple_moves.GenericMonteCarloMover: (17) Trial number: 33
protocols.rosetta_scripts.ParsedProtocol: (17) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb=======================
protocols.rosetta_scripts.ParsedProtocol: (17) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (17) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (17) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (17) Packer task: initialize from command line() 
core.pack.pack_rotamers: (24) built 809 rotamers at 29 positions.
core.pack.interaction_graph.interaction_graph_factory: (24) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (24) IG: 715728 bytes
protocols.rosetta_scripts.ParsedProtocol: (24) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (24) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (24) =======================BEGIN MOVER ParsedProtocol - minimize_interface=======================
protocols.rosetta_scripts.ParsedProtocol: (24) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (24) Packer task: initialize from command line() 
core.pack.pack_rotamers: (24) built 809 rotamers at 29 positions.
core.pack.interaction_graph.interaction_graph_factory: (24) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (24) IG: 715728 bytes
protocols.rosetta_scripts.ParsedProtocol: (24) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (24) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (24) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc=======================
core.pack.task: (24) Packer task: initialize from command line() 
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.optimization.Linprotocols.rosetta_scripts.ParsedProtocol: (25) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb=======================
protocols.rosetta_scripts.ParsedProtocol: (25) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (25) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (25) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (25) Packer task: initialize from command line() 
core.pack.pack_rotamers: (25) built 1815 rotamers at 74 positions.
core.pack.interaction_graph.interaction_graph_factory: (25) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (25) IG: 2278944 bytes
protocols.rosetta_scripts.ParsedProtocol: (25) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (25) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (25) =======================BEGIN MOVER ParsedProtocol - minimize_interface=======================
protocols.rosetta_scripts.ParsedProtocol: (25) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (25) Packer task: initialize from command line() 
core.pack.pack_rotamers: (25) built 1815 rotamers at 74 positions.
core.pack.interaction_graph.interaction_graph_factory: (25) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (25) IG: 2278328 bytes
protocols.rosetta_scripts.ParsedProtocol: (25) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (25) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (25) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc=======================
core.pack.task: (25) Packer task: initialize from command line() 
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 3core.pack.pack_rotamers: (28) built 2172 rotamers at 84 positions.
core.pack.interaction_graph.interaction_graph_factory: (28) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (28) IG: 2796100 bytes
protocols.rosetta_scripts.ParsedProtocol: (28) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (28) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (28) =======================BEGIN MOVER ParsedProtocol - minimize_interface=======================
protocols.rosetta_scripts.ParsedProtocol: (28) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (28) Packer task: initialize from command line() 
core.pack.pack_rotamers: (28) built 2172 rotamers at 84 positions.
core.pack.interaction_graph.interaction_graph_factory: (28) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (28) IG: 2796100 bytes
protocols.rosetta_scripts.ParsedProtocol: (28) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (28) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (28) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc=======================
core.pack.task: (28) Packer task: initialize from command line() 
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.optimizationcore.pack.pack_rotamers: (29) built 1818 rotamers at 62 positions.
core.pack.interaction_graph.interaction_graph_factory: (29) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (29) IG: 2445288 bytes
protocols.rosetta_scripts.ParsedProtocol: (29) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (29) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (29) =======================BEGIN MOVER AtomTree - set_up_foldtree=======================
protocols.protein_interface_design.movers.SetAtomTree: (29) Applying fold_tree: FOLD_TREE  EDGE 134 1 -1  EDGE 134 314 1  EDGE 314 301 -1  EDGE 313 299 2  EDGE 299 268 -1  EDGE 280 266 3  EDGE 266 243 -1  EDGE 314 344 -1  EDGE 332 346 4  EDGE 346 377 -1  EDGE 365 379 5  EDGE 379 396 -1  EDGE 134 152 -1  EDGE 145 153 6  EDGE 153 180 -1  EDGE 176 182 7  EDGE 182 221 -1  EDGE 216 223 8  EDGE 223 242 -1  EDGE 299 300 -1  EDGE 266 267 -1  EDGE 346 345 -1  EDGE 379 378 -1  EDGE 182 181 -1  EDGE 223 222 -1 
protocols.rosetta_scripts.ParsedProtocol: (29) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (29) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (29) =======================BEGIN MOVER MinMover - minimize_flex=======================
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF cacore.pack.interaction_graph.interaction_graph_factory: (8) IG: 1562864 bytes
protocols.rosetta_scripts.ParsedProtocol: (8) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (8) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (8) =======================BEGIN MOVER AtomTree - set_up_foldtree=======================
protocols.protein_interface_design.movers.SetAtomTree: (8) Applying fold_tree: FOLD_TREE  EDGE 134 1 -1  EDGE 134 314 1  EDGE 314 301 -1  EDGE 313 299 2  EDGE 299 268 -1  EDGE 280 266 3  EDGE 266 243 -1  EDGE 314 344 -1  EDGE 332 346 4  EDGE 346 377 -1  EDGE 365 379 5  EDGE 379 396 -1  EDGE 134 152 -1  EDGE 145 153 6  EDGE 153 180 -1  EDGE 176 182 7  EDGE 182 221 -1  EDGE 216 223 8  EDGE 223 242 -1  EDGE 299 300 -1  EDGE 266 267 -1  EDGE 346 345 -1  EDGE 379 378 -1  EDGE 182 181 -1  EDGE 223 222 -1 
protocols.rosetta_scripts.ParsedProtocol: (8) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (8) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (8) =======================BEGIN MOVER MinMover - minimize_flex=======================
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.core.pack.interaction_graph.interaction_graph_factory: (19) IG: 2334424 bytes
protocols.rosetta_scripts.ParsedProtocol: (19) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (19) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (19) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc=======================
core.pack.task: (19) Packer task: initialize from command line() 
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.optimization.LineMinimizer: (19) [ ERROR ] Inaccurate G! step= 3.8147e-08 Deriv= -4.81805 Finite Diff= 0.244522
protocols.rosetta_scripts.ParsedProtocol: (19) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (19) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (19) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (19) Packer task: initialize from command line() 
core.pack.pack_rotamers: (19) built 1700 rotamers at 58 positions.
core.pack.interaction_graph.interaction_graph_factory: (19) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (19) IG: 2334424 bytes
protocols.rosetta_scripts.ParsedProtocol: (19) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (19) =======================END FILTER core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (14) [ ERROR ] Noprotocols.TrialMover: (31) Acceptance rate: 0.32
protocols.TrialMover: (31) Acceptance rate: 0.3
protocols.TrialMover: (31) Acceptance rate: 0.2
protocols.TrialMover: (31) Acceptance rate: 0.5
protocols.TrialMover: (31) Acceptance rate: 0.22
protocols.rosetta_scripts.ParsedProtocol: (31) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (31) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (31) =======================BEGIN MOVER SaveAndRetrieveSidechains - srsc=======================
protocols.protein_interface_design.movers.SaveAndRetrieveSidechains: (31) Retrieving sidechains...
protocols.rosetta_scripts.ParsedProtocol: (31) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (31) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (31) =======================BEGIN MOVER GenericMonteCarlo - mc_dock_high=======================
protocols.simple_moves.GenericMonteCarloMover: (31) No task inputted
protocols.simple_moves.GenericMonteCarloMover: (31) The number of trials for this run is: 100
protocols.simple_moves.GenericMonteCarloMover: (31) Initialization done 
protocols.simple_moves.GenericMonteCarloMover: (31) Trial number: 1
protocols.rosetta_scripts.ParsedProtocol: (31) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb=======================
protocols.rosetta_scripts.ParsedProtocol: (31) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (31) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (31) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (31) Packer task: initialize from command line() 
core.pack.pack_rotamers: (31) built 2337 rotamers at 98 positions.
core.pack.interaction_graph.interaction_graph_factory: (31) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (31) IG: 3168452 bytes
protocols.rosetta_scripts.ParsedProtocol: (11) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (11) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (11) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (11) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (11) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (11) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (11) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (11) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (11) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (11) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (11) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (11) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (11) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol: (11) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (11) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (11) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (11) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (11) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (11) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (11) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (11) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (11) ============End report for ==================
protocols.simple_moves.GenericMonteCarloMover: (11) Trial number: 36
protocols.rosetta_scripts.ParsedProtocol: (11) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb=======================
protocols.rosetta_scripts.ParsedProtocol: (11) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (11) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (11) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (11) Packer task: initialize from command line() 
core.pack.pack_rotamers: (11) built 1705 rotamers at 63 positions.
core.pack.interaction_graph.interaction_graph_factory: (11) Instantiating DensePDInteractionGraph
core.optimization.LineMinimizer: (15) [ ERROR ] Inaccurate G! step= 1.51865e-07 Deriv= -2523.86 Finite Diff= -92.9076
core.optimization.Minimizer: (15) Line search failed even after resetting Hessian; aborting at iter#7
protocols.rosetta_scripts.ParsedProtocol: (15) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (15) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (15) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (15) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (15) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (15) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (15) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (15) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (15) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (15) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (15) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (15) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (15) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol: (15) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (15) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (15) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (15) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (15) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (15) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (15) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (15) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (15) ============End report for ==================
protocols.simple_moves.GenericMonteCarloMover: (15) Trial number: 74
protocols.rosetta_scripts.ParsedProtocol: (15) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb=======================
protocols.rosetta_scripts.ParsedProtocol: (15) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (15) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (15) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (15) Packer task: initialize from command line() 
core.pack.pack_rotamers: (15) built 1141 rotamers at 52 positions.
core.pack.interaction_graph.interaction_graph_factory: (15) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (15) IG: 1059688 bytes
protocols.rosetta_scripts.ParsedProtocol: (15) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (15) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (15) =======================BEGIN MOVER ParsedProtocol - minimize_interface=======================
protocols.rosetta_scripts.ParsedProtocol: (15) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (15)[ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
protocols.rosetta_scripts.ParsedProtocol: (22) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (22) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (22) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (22) Packer task: initialize from command line() 
core.pack.pack_rotamers: (22) built 380 rotamers at 24 positions.
core.pack.interaction_graph.interaction_graph_factory: (22) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (22) IG: 194132 bytes
protocols.rosetta_scripts.ParsedProtocol: (22) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (22) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (22) =======================BEGIN MOVER AtomTree - set_up_foldtree=======================
protocols.protein_interface_design.movers.SetAtomTree: (22) Applying fold_tree: FOLD_TREE  EDGE 134 1 -1  EDGE 134 314 1  EDGE 314 301 -1  EDGE 313 299 2  EDGE 299 268 -1  EDGE 280 266 3  EDGE 266 243 -1  EDGE 314 344 -1  EDGE 332 346 4  EDGE 346 377 -1  EDGE 365 379 5  EDGE 379 396 -1  EDGE 134 152 -1  EDGE 145 153 6  EDGE 153 180 -1  EDGE 176 182 7  EDGE 182 221 -1  EDGE 216 223 8  EDGE 223 242 -1  EDGE 299 300 -1  EDGE 266 267 -1  EDGE 346 345 -1  EDGE 379 378 -1  EDGE 182 181 -1  EDGE 223 222 -1 
protocols.rosetta_scripts.ParsedProtocol: (22) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (22) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (22) =======================BEGIN MOVER MinMover - minimize_flex=======================
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for t.LineMinimizer: (12) [ ERROR ] Inaccurate G! step= 3.8147e-06 Deriv= -0.385241 Finite Diff= 0.163608
protocols.rosetta_scripts.ParsedProtocol: (12) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (12) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (12) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (12) Packer task: initialize from command line() 
45-1, 345-2!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (25) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.optimization.LineMinimizer: (25) [ ERROR ] Inaccurate G! step= 9.53674e-07 Deriv= -634.24 Finite Diff= 20.9833
protocols.rosetta_scripts.ParsedProtocol: (25) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (25) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (25) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (25) Packer task: initialize from command line() 
core.pack.pack_rotamers: (25) built 1815 rotamers at 74 positions.
core.pack.interaction_graph.interaction_graph_factory: (25) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (25) IG: 2280612 bytes
======================
protocols.rosetta_scripts.ParsedProtocol: (13) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (13) Packer task: initialize from command line() 
core.pack.pack_rotamers: (13) built 856 rotamers at 35 positions.
core.pack.interaction_graph.interaction_graph_factory: (13) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (13) IG: 661936 bytes
protocols.rosetta_scripts.ParsedProtocol: (13) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (13) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (13) =======================BEGIN MOVER AtomTree - set_up_foldtree=======================
protocols.protein_interface_design.movers.SetAtomTree: (13) Applying fold_tree: FOLD_TREE  EDGE 134 1 -1  EDGE 134 314 1  EDGE 314 301 -1  EDGE 313 299 2  EDGE 299 268 -1  EDGE 280 266 3  EDGE 266 243 -1  EDGE 314 344 -1  EDGE 332 346 4  EDGE 346 377 -1  EDGE 365 379 5  EDGE 379 396 -1  EDGE 134 152 -1  EDGE 145 153 6  EDGE 153 180 -1  EDGE 176 182 7  EDGE 182 221 -1  EDGE 216 223 8  EDGE 223 242 -1  EDGE 299 300 -1  EDGE 266 267 -1  EDGE 346 345 -1  EDGE 379 378 -1  EDGE 182 181 -1  EDGE 223 222 -1 
protocols.rosetta_scripts.ParsedProtocol: (13) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (13) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (13) =======================BEGIN MOVER MinMover - minimize_flex=======================
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (13) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377--------------------------------------------------------------------------
mpiexec noticed that process rank 23 with PID 16158 on node fra32d exited on signal 9 (Killed).
--------------------------------------------------------------------------
=======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (27) =======================BEGIN MOVER AtomTree - set_up_foldtree=======================
protocols.protein_interface_design.movers.SetAtomTree: (27) Applying fold_tree: FOLD_TREE  EDGE 134 1 -1  EDGE 134 314 1  EDGE 314 301 -1  EDGE 313 299 2  EDGE 299 268 -1  EDGE 280 266 3  EDGE 266 243 -1  EDGE 314 344 -1  EDGE 332 346 4  EDGE 346 377 -1  EDGE 365 379 5  EDGE 379 396 -1  EDGE 134 152 -1  EDGE 145 153 6  EDGE 153 180 -1  EDGE 176 182 7  EDGE 182 221 -1  EDGE 216 223 8  EDGE 223 242 -1  EDGE 299 300 -1  EDGE 266 267 -1  EDGE 346 345 -1  EDGE 379 378 -1  EDGE 182 181 -1  EDGE 223 222 -1 
protocols.rosetta_scripts.ParsedProtocol: (27) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (27) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (27) =======================BEGIN MOVER MinMover - minimize_flex=======================
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (27) [ ERROR ] No proper DoF can be found for these proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (14) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.optimization.LineMinimizer: (14) [ ERROR ] Inaccurate G! step= 3.8147e-08 Deriv= -8697.03 Finite Diff= -46.367
core.optimization.LineMinimizer: (14) [ ERROR ] Inaccurate G! step= 8.18097e-08 Deriv= -8697.03 Finite Diff= -46.3736
core.optimization.Minimizer: (14) Line search failed even after resetting Hessian; aborting at iter#1
protocols.rosetta_scripts.ParsedProtocol: (14) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (14) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (14) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (14) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (14) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (14) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (14) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (14) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (14) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (14) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (14) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (14) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (14) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol: (14) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (14) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (14) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (14) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (14) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (14) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (14) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (14) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (14) ============End report for ==================
protocols.simple_moves.GenericMonteCarloMover: (14) Trial number: 98
protocols.rosetta_scripts.ParsedProtocol: (14) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb=======================
protocols.rosetta_scripts.ParsedProtocol: (14) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (14) =======================ENcols.rosetta_scripts.ParsedProtocol.REPORT: (20) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (20) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (20) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (20) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (20) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (20) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (20) ============Begin report for ddg==================
core.pack.task: (20) Packer task: initialize from command line() 
core.pack.pack_rotamers: (20) built 908 rotamers at 31 positions.
core.pack.interaction_graph.interaction_graph_factory: (20) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (20) IG: 722020 bytes
protocols.moves.RigidBodyMover: (20) Translate: Jump (before): RT 0.8201 0.571437 0.0299406 -0.457527 0.686248 -0.565449 -0.343665 0.450026 0.824239 0.991304 -30.6221 -6.11222  
protocols.moves.RigidBodyMover: (20) Translate: Jump (after):  RT 0.8201 0.571437 0.0299406 -0.457527 0.686248 -0.565449 -0.343665 0.450026 0.824239 71.8702 -1012.54 -181.633  
core.pack.pack_rotamers: (20) built 484 rotamers at 31 positions.
core.pack.interaction_graph.interaction_graph_factory: (20) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (20) IG: 141444 bytes
protocols.simple_filters.DdgFilter: (20) -----------------------------------------
 Scores                       Wghtd.Score
-----------------------------------------
 fa_atr                     -43.046
 fa_rep                      35.144
 fa_sol                      33.627
 fa_intra_rep                 0.055
 fa_intra_sol_xover4          4.015
 lk_ball_wtd                 -0.124
 fa_elec                     -5.362
 hbond_sr_bb                  0.000
 hbond_lr_bb                  0.000
 hbond_bb_sc                  2.133
 hbond_sc                    -5.927
 omega                        0.000
 fa_dun                      18.745
 p_aa_pp                      0.000
 yhh_planarity                0.000
 ref                          0.000
 rama_prepro                  0.000
-----------------------------------------
Sum ddg: 39.2593
protocols.simple_filters.DdgFilter: (20) 39.2593, 
 average value: 39.2593
protocols.rosetta_scripts.ParsedProtocol.REPORT: (20) ddg 39.2593
============End report for ddg==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (20) ============Begin report for sasa==================
protocols.moves.RigidBodyMover: (20) Translate: Jump (before): RT 0.8201 0.571437 0.0299406 -0.457527 0.686248 -0.565449 -0.343665 0.450026 0.824239 0.991304 -30.6221 -6.11222  
protocols.moves.RigidBodyMover: (20) Translate: Jump (after):  RT 0.8201 0.571437 0.0299406 -0.457527 0.686248 -0.565449 -0.343665 0.450026 0.824239 71.8702 -1012.54 -181.633  
protocols.rosetta_scripts.ParsedProtocol.REPORT: (20) Sasa= 1671.02
============End report for sasa==================
core.conformation.util: (20) Non-ideal residue detected:  Residue #1 atom #1(  N   ) :  Ideal D=1.458, Inspected D=1.49437
core.io.silent: (20) detected attempt to write non-ideal pose to silent-file...Automatically switching to binary silent-struct type
.LineMinimizer: (28) [ ERROR ] Inaccurate G! step= 3.8147e-08 Deriv= -1.26484 Finite Diff= 0.99676
protocols.rosetta_scripts.ParsedProtocol: (28) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (28) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (28) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (28) Packer task: initialize from command line() 
core.pack.pack_rotamers: (28) built 2172 rotamers at 84 positions.
core.pack.interaction_graph.interaction_graph_factory: (28) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (28) IG: 2796100 bytes
protocols.rosetta_scripts.ParsedProtocol: (28) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (28) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (28) =======================BEGIN MOVER AtomTree - set_up_foldtree=======================
protocols.protein_interface_design.movers.SetAtomTree: (28) Applying fold_tree: FOLD_TREE  EDGE 134 1 -1  EDGE 134 314 1  EDGE 314 301 -1  EDGE 313 299 2  EDGE 299 268 -1  EDGE 280 266 3  EDGE 266 243 -1  EDGE 314 344 -1  EDGE 332 346 4  EDGE 346 377 -1  EDGE 365 379 5  EDGE 379 396 -1  EDGE 134 152 -1  EDGE 145 153 6  EDGE 153 180 -1  EDGE 176 182 7  EDGE 182 221 -1  EDGE 216 223 8  EDGE 223 242 -1  EDGE 299 300 -1  EDGE 266 267 -1  EDGE 346 345 -1  EDGE 379 378 -1  EDGE 182 181 -1  EDGE 223 222 -1 
protocols.rosetta_scripts.ParsedProtocol: (28) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (28) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (28) =======================BEGIN MOVER MinMover - minimize_flex=======================
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (28) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (28) [ ERROR ] No pr Packer task: initialize from command line() 
core.pack.pack_rotamers: (15) built 1141 rotamers at 52 positions.
core.pack.interaction_graph.interaction_graph_factory: (15) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (15) IG: 1059688 bytes
protocols.rosetta_scripts.ParsedProtocol: (15) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (15) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (15) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc=======================
core.pack.task: (15) Packer task: initialize from command line() 
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (15) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.optimization.LineMinimizer: (15) [ ERROR ] Inaccurate G! step= 1.90735e-06 Deriv= -0.674907 Finite Diff= 0.284927
protocols.rosetta_scripts.ParsedProtocol: (15) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (15) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (15) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (15) Packer task: initialize from command line() 
core.pack.pack_rotamers: (15) built 1141 rotamers at 52 positions.
core.pack.interaction_graph.interaction_graph_factory: (15) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory=======================
protocols.rosetta_scripts.ParsedProtocol: (19) =======================BEGIN MOVER AtomTree - set_up_foldtree=======================
protocols.protein_interface_design.movers.SetAtomTree: (19) Applying fold_tree: FOLD_TREE  EDGE 134 1 -1  EDGE 134 314 1  EDGE 314 301 -1  EDGE 313 299 2  EDGE 299 268 -1  EDGE 280 266 3  EDGE 266 243 -1  EDGE 314 344 -1  EDGE 332 346 4  EDGE 346 377 -1  EDGE 365 379 5  EDGE 379 396 -1  EDGE 134 152 -1  EDGE 145 153 6  EDGE 153 180 -1  EDGE 176 182 7  EDGE 182 221 -1  EDGE 216 223 8  EDGE 223 242 -1  EDGE 299 300 -1  EDGE 266 267 -1  EDGE 346 345 -1  EDGE 379 378 -1  EDGE 182 181 -1  EDGE 223 222 -1 
protocols.rosetta_scripts.ParsedProtocol: (19) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (19) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (19) =======================BEGIN MOVER MinMover - minimize_flex=======================
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (19) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
protocols.rosetta_scripts.ParsedProtocol: (30) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (30) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (30) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (30) Packer task: initialize from command line() 
core.pack.pack_rotamers: (30) built 931 rotamers at 38 positions.
core.pack.interaction_graph.interaction_graph_factory: (30) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (30) IG: 918396 bytes
protocols.rosetta_scripts.ParsedProtocol: (30) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (30) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (30) =======================BEGIN MOVER AtomTree - set_up_foldtree=======================
protocols.protein_interface_design.movers.SetAtomTree: (30) Applying fold_tree: FOLD_TREE  EDGE 134 1 -1  EDGE 134 314 1  EDGE 314 301 -1  EDGE 313 299 2  EDGE 299 268 -1  EDGE 280 266 3  EDGE 266 243 -1  EDGE 314 344 -1  EDGE 332 346 4  EDGE 346 377 -1  EDGE 365 379 5  EDGE 379 396 -1  EDGE 134 152 -1  EDGE 145 153 6  EDGE 153 180 -1  EDGE 176 182 7  EDGE 182 221 -1  EDGE 216 223 8  EDGE 223 242 -1  EDGE 299 300 -1  EDGE 266 267 -1  EDGE 346 345 -1  EDGE 379 378 -1  EDGE 182 181 -1  EDGE 223 222 -1 
protocols.rosetta_scripts.ParsedProtocol: (30) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (30) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (30) =======================BEGIN MOVER MinMover - minimize_flex=======================
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (30) [ ERROR ] No proper DoF can be found for tROR ] Inaccurate G! step= 3.8147e-08 Deriv= -0.604779 Finite Diff= -0.0235707
protocols.rosetta_scripts.ParsedProtocol: (9) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (9) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (9) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (9) Packer task: initialize from command line() 
core.pack.pack_rotamers: (9) built 942 rotamers at 49 positions.
core.pack.interaction_graph.interaction_graph_factory: (9) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (9) IG: 844876 bytes
protocols.rosetta_scripts.ParsedProtocol: (9) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (9) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (9) =======================BEGIN MOVER AtomTree - set_up_foldtree=======================
protocols.protein_interface_design.movers.SetAtomTree: (9) Applying fold_tree: FOLD_TREE  EDGE 134 1 -1  EDGE 134 314 1  EDGE 314 301 -1  EDGE 313 299 2  EDGE 299 268 -1  EDGE 280 266 3  EDGE 266 243 -1  EDGE 314 344 -1  EDGE 332 346 4  EDGE 346 377 -1  EDGE 365 379 5  EDGE 379 396 -1  EDGE 134 152 -1  EDGE 145 153 6  EDGE 153 180 -1  EDGE 176 182 7  EDGE 182 221 -1  EDGE 216 223 8  EDGE 223 242 -1  EDGE 299 300 -1  EDGE 266 267 -1  EDGE 346 345 -1  EDGE 379 378 -1  EDGE 182 181 -1  EDGE 223 222 -1 
protocols.rosetta_scripts.ParsedProtocol: (9) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (9) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (9) =======================BEGIN MOVER MinMover - minimize_flex=======================
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, n be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.optimization.LineMinimizer: (29) [ ERROR ] Inaccurate G! step= 3.8147e-08 Deriv= -177047 Finite Diff= -7.70896
core.optimization.LineMinimizer: (29) [ ERROR ] Inaccurate G! step= 1.8132e-08 Deriv= -177047 Finite Diff= -7.63648
core.optimization.Minimizer: (29) Line search failed even after resetting Hessian; aborting at iter#1
protocols.rosetta_scripts.ParsedProtocol: (29) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (29) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (29) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (29) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (29) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (29) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (29) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (29) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (29) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (29) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (29) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (29) ============Begin report f182 221 -1  EDGE 216 223 8  EDGE 223 242 -1  EDGE 299 300 -1  EDGE 266 267 -1  EDGE 346 345 -1  EDGE 379 378 -1  EDGE 182 181 -1  EDGE 223 222 -1 
protocols.rosetta_scripts.ParsedProtocol: (26) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (26) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (26) =======================BEGIN MOVER MinMover - minimize_flex=======================
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoeMinimizer: (24) [ ERROR ] Inaccurate G! step= 3.8147e-08 Deriv= -0.455928 Finite Diff= -0.0173062
protocols.rosetta_scripts.ParsedProtocol: (24) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (24) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (24) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (24) Packer task: initialize from command line() 
core.pack.pack_rotamers: (24) built 809 rotamers at 29 positions.
core.pack.interaction_graph.interaction_graph_factory: (24) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (24) IG: 715728 bytes
protocols.rosetta_scripts.ParsedProtocol: (24) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (24) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (24) =======================BEGIN MOVER AtomTree - set_up_foldtree=======================
protocols.protein_interface_design.movers.SetAtomTree: (24) Applying fold_tree: FOLD_TREE  EDGE 134 1 -1  EDGE 134 314 1  EDGE 314 301 -1  EDGE 313 299 2  EDGE 299 268 -1  EDGE 280 266 3  EDGE 266 243 -1  EDGE 314 344 -1  EDGE 332 346 4  EDGE 346 377 -1  EDGE 365 379 5  EDGE 379 396 -1  EDGE 134 152 -1  EDGE 145 153 6  EDGE 153 180 -1  EDGE 176 182 7  EDGE 182 221 -1  EDGE 216 223 8  EDGE 223 242 -1  EDGE 299 300 -1  EDGE 266 267 -1  EDGE 346 345 -1  EDGE 379 378 -1  EDGE 182 181 -1  EDGE 223 222 -1 
protocols.rosetta_scripts.ParsedProtocol: (24) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (24) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (24) =======================BEGIN MOVER MinMover - minimize_flex=======================
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (24) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (24) [ ERROR ] No propscripts.ParsedProtocol: (21) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (21) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (21) =======================BEGIN MOVER AtomTree - set_up_foldtree=======================
protocols.protein_interface_design.movers.SetAtomTree: (21) Applying fold_tree: FOLD_TREE  EDGE 134 1 -1  EDGE 134 314 1  EDGE 314 301 -1  EDGE 313 299 2  EDGE 299 268 -1  EDGE 280 266 3  EDGE 266 243 -1  EDGE 314 344 -1  EDGE 332 346 4  EDGE 346 377 -1  EDGE 365 379 5  EDGE 379 396 -1  EDGE 134 152 -1  EDGE 145 153 6  EDGE 153 180 -1  EDGE 176 182 7  EDGE 182 221 -1  EDGE 216 223 8  EDGE 223 242 -1  EDGE 299 300 -1  EDGE 266 267 -1  EDGE 346 345 -1  EDGE 379 378 -1  EDGE 182 181 -1  EDGE 223 222 -1 
protocols.rosetta_scripts.ParsedProtocol: (21) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (21) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (21) =======================BEGIN MOVER MinMover - minimize_flex=======================
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (21) [ ERROR ] No proper DoF can be found raph.interaction_graph_factory: (16) IG: 1994240 bytes
protocols.rosetta_scripts.ParsedProtocol: (16) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (16) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (16) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc=======================
core.pack.task: (16) Packer task: initialize from command line() 
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (16) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.optimization.LineMinimizer: (16) [ ERROR ] Inaccurate G! step= 3.8147e-06 Deriv= -36.3246 Finite Diff= 2.20475
protocols.rosetta_scripts.ParsedProtocol: (16) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (16) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (16) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (16) Packer task: initialize from command line() 
core.pack.pack_rotamers: (16) built 1604 rotamers at 53 positions.
core.pack.interaction_graph.interaction_graph_factory: (16) Instantiating DensePDInteractionGraph
kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (8) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
protocols.rosetta_scripts.ParsedProtocol: (8) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (8) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (8) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (8) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (8) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (8) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (8) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (8) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (8) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (8) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (8) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (8) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (8) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol: (8) =======================BEGIN FILTER =======================
345-3!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (9) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.optimization.LineMinimizer: (9) [ ERROR ] Inaccurate G! step= 3.8147e-08 Deriv= -5209.22 Finite Diff= -10.5273
core.optimization.LineMinimizer: (9) [ ERROR ] Inaccurate G! step= 1.05707e-07 Deriv= -5209.22 Finite Diff= -10.5368
core.optimization.Minimizer: (9) Line search failed even after resetting Hessian; aborting at iter#1
or ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (29) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol: (29) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (29) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (29) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (29) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (29) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (29) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (29) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (29) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (29) ============End report for ==================
protocols.simple_moves.GenericMonteCarloMover: (29) Trial number: 9
protocols.rosetta_scripts.ParsedProtocol: (29) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb=======================
protocols.rosetta_scripts.ParsedProtocol: (29) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (29) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (29) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (29) Packer task: initialize from command line() 
core.pack.pack_rotamers: (29) built 2073 rotamers at 68 positions.
core.pack.interaction_graph.interaction_graph_factory: (29) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (29) IG: 3102480 bytes
protocols.rosetta_scripts.ParsedProtocol: (29) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (29) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (29) =======================BEGIN MOVER ParsedProtocol - minimize_interface=======================
protocols.rosetta_scripts.ParsedProtocol: (29) =======================BEGIN MOVER PackRotamersMover - repack=======================
core.pack.task: (29) Packer task: initialize from command line() 
core.pack.pack_rotamers: (29) built 2073 rotamers at 68 positions.
core.pack.interaction_graph.interaction_graph_factory: (29) Instantiating DensePDInteractionGraph
core.pack.interaction_graph.interaction_graph_factory: (29) IG: 3102480 bytes
protocols.rosetta_scripts.ParsedProtocol: (29) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (29) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (29) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc=======================
core.pack.task: (29) Packer task: initialize from command line() 
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (29) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (29) [ ERROR ] No propms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (26) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.optimization.LineMinimizer: (26) [ ERROR ] Inaccurate G! step= 3.8147e-08 Deriv= -3277.74 Finite Diff= -108.135
core.optimization.LineMinimizer: (26) [ ERROR ] Inaccurate G! step= 1.33261e-07 Deriv= -3277.74 Finite Diff= -108.135
core.optimization.Minimizer: (26) Line search failed even after resetting Hessian; aborting at iter#1
protocols.rosetta_scripts.ParsedProtocol: (26) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (26) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (26) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (26) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (26) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (26) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (26) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (26) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (26) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (26) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (26) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (26) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (26) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol: (26) =======================BEGIN FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (26) =======================END FILTER =======================
protocols.rosetta_scripts.ParsedProtocol: (26) setting status to success
protocols.rosetta_scripts.ParsedProtocol.REPORT: (26) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (26) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (26) ============Begin report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (26) ============End report for ==================
protocols.rosetta_scripts.ParsedProtocol.REPORT: (26) ============Begin report for ==================
protocols.hese four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3!
core.kinematics.AtomTree: (22) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1!
core.kinematics