scons: Reading SConscript files ... Logging information printing for build: environment Environment: - AR = ar - ARCOM = $AR $ARFLAGS $TARGET $SOURCES - ARFLAGS = rc - AS = as - ASCOM = $AS $ASFLAGS -o $TARGET $SOURCES - ASFLAGS = - ASPPCOM = $CC $ASPPFLAGS $CPPFLAGS $_CPPDEFFLAGS $_CPPINCFLAGS -c -o $TARGET $SOURCES - ASPPFLAGS = $ASFLAGS - BIBER = biber - BIBERCOM = cd ${TARGET.dir} && $BIBER $BIBERFLAGS ${SOURCE.filebase} - BIBERFLAGS = - BIBTEX = bibtex - BIBTEXCOM = cd ${TARGET.dir} && $BIBTEX $BIBTEXFLAGS ${SOURCE.filebase} - BIBTEXFLAGS = - BUILDERS = {'CFile': , 'DVI': , 'Zip': , 'StaticLibrary': , 'M4': , 'Program': , 'ProgramAllAtOnce': , 'RPCGenHeader': , 'CXXFile': , 'Object': , 'RPCGenXDR': , 'JavaClassDir': , 'LoadableModule': , 'CopyAs': , 'SharedLibrary': , 'JavaH': , 'CopyTo': , 'PDF': , 'StaticObject': , 'SharedObject': , 'JarFile': , 'Gs': , 'Tar': , 'JavaClassFile': , 'Rpm': , 'RPCGenService': , 'Library': , 'RMIC': , 'PostScript': , 'JavaFile': , 'RPCGenClient': } - CC = /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc - CCCOM = $CC -o $TARGET -c $CFLAGS $CCFLAGS $_CCCOMCOM $SOURCES - CCFLAGS = -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter - CCVERSION = 4.8.5 - CFILESUFFIX = .c - CFLAGS = -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit - CONFIGUREDIR = #/.sconf_temp - CONFIGURELOG = #/config.log - COPYSTR = Copy file(s): "$SOURCES" to "$TARGETS" - CPPDEFPREFIX = -D - CPPDEFSUFFIX = - CPPFLAGS = ['-DBOOST_ERROR_CODE_HEADER_ONLY', '-DBOOST_SYSTEM_NO_DEPRECATED', '-DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS', '-DBOOST_DISABLE_THREADS', '-DPTR_STD', '-DNDEBUG', '-DUSEMPI'] - CPPSUFFIXES = ['.c', '.C', '.cxx', '.cpp', '.c++', '.cc', '.h', '.H', '.hxx', '.hpp', '.hh', '.F', '.fpp', '.FPP', '.m', '.mm', '.S', '.spp', '.SPP', '.sx'] - CXX = /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx - CXXCOM = $CXX -o $TARGET -c $CXXFLAGS $CCFLAGS $_CCCOMCOM $SOURCES - CXXFILESUFFIX = .cc - CXXFLAGS = -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit - CXXVERSION = 4.8.5 - DC = dmd - DCOM = $DC $_DINCFLAGS $_DVERFLAGS $_DDEBUGFLAGS $_DFLAGS -c -of$TARGET $SOURCES - DDEBUG = [] - DDEBUGPREFIX = -debug= - DDEBUGSUFFIX = - DFILESUFFIX = .d - DFLAGPREFIX = - - DFLAGS = [] - DFLAGSUFFIX = - DINCPREFIX = -I - DINCSUFFIX = - DLIB = ar cr - DLIBCOM = $DLIB $_DLIBFLAGS $TARGET $SOURCES $_DLIBFLAGS - DLIBDIRPREFIX = -L-L - DLIBDIRSUFFIX = - DLIBFLAGPREFIX = - - DLIBFLAGSUFFIX = - DLIBLINKPREFIX = -L-l - DLIBLINKSUFFIX = - DLINK = $DC - DLINKCOM = $DLINK -of$TARGET $DLINKFLAGS $__DRPATH $SOURCES $_DLIBDIRFLAGS $_DLIBFLAGS - DLINKFLAGS = - DPATH = ['#/'] - DRPATHPREFIX = -L-rpath= - DRPATHSUFFIX = - DSUFFIXES = ['.d'] - DShLibSonameGenerator = - DVERPREFIX = -version= - DVERSIONS = [] - DVERSUFFIX = - DVIPDF = dvipdf - DVIPDFCOM = cd ${TARGET.dir} && $DVIPDF $DVIPDFFLAGS ${SOURCE.file} ${TARGET.file} - DVIPDFFLAGS = - DVIPS = dvips - DVIPSFLAGS = - Dir = - Dirs = - ENV = {'PATH': ['/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin', '/apps/compiler/gcc/8.3.0/bin', '/apps/applications/PYTHON/2.7/bin', '/usr/lib64/qt-3.3/bin', '/usr/local/bin', '/usr/bin', '/usr/local/sbin', '/usr/sbin', '/opt/ddn/ime/bin', '/cm/local/apps/environment-modules/3.2.10/bin', '/opt/pbs/bin', '/home01/a1376a01/.local/bin', '/home01/a1376a01/bin', '/bin', '/usr/bin', '/usr/local/bin']} - EPSTOPDF = epstopdf - EPSTOPDFCOM = $EPSTOPDF $EPSTOPDFFLAGS ${SOURCE} --outfile=${TARGET} - EPSTOPDFFLAGS = - ESCAPE = - F03 = gfortran - F03COM = $F03 -o $TARGET -c $F03FLAGS $_F03INCFLAGS $_FORTRANMODFLAG $SOURCES - F03FLAGS = - F03PPCOM = $F03 -o $TARGET -c $F03FLAGS $CPPFLAGS $_CPPDEFFLAGS $_F03INCFLAGS $_FORTRANMODFLAG $SOURCES - F08 = gfortran - F08COM = $F08 -o $TARGET -c $F08FLAGS $_F08INCFLAGS $_FORTRANMODFLAG $SOURCES - F08FLAGS = - F08PPCOM = $F08 -o $TARGET -c $F08FLAGS $CPPFLAGS $_CPPDEFFLAGS $_F08INCFLAGS $_FORTRANMODFLAG $SOURCES - F77 = gfortran - F77COM = $F77 -o $TARGET -c $F77FLAGS $_F77INCFLAGS $SOURCES - F77FLAGS = - F77PPCOM = $F77 -o $TARGET -c $F77FLAGS $CPPFLAGS $_CPPDEFFLAGS $_F77INCFLAGS $SOURCES - F90 = gfortran - F90COM = $F90 -o $TARGET -c $F90FLAGS $_F90INCFLAGS $_FORTRANMODFLAG $SOURCES - F90FLAGS = - F90PPCOM = $F90 -o $TARGET -c $F90FLAGS $CPPFLAGS $_CPPDEFFLAGS $_F90INCFLAGS $_FORTRANMODFLAG $SOURCES - F95 = gfortran - F95COM = $F95 -o $TARGET -c $F95FLAGS $_F95INCFLAGS $_FORTRANMODFLAG $SOURCES - F95FLAGS = - F95PPCOM = $F95 -o $TARGET -c $F95FLAGS $CPPFLAGS $_CPPDEFFLAGS $_F95INCFLAGS $_FORTRANMODFLAG $SOURCES - FORTRAN = gfortran - FORTRANCOM = $FORTRAN -o $TARGET -c $FORTRANFLAGS $_FORTRANINCFLAGS $_FORTRANMODFLAG $SOURCES - FORTRANFLAGS = - FORTRANMODDIR = - FORTRANMODDIRPREFIX = -J - FORTRANMODDIRSUFFIX = - FORTRANMODPREFIX = - FORTRANMODSUFFIX = .mod - FORTRANPPCOM = $FORTRAN -o $TARGET -c $FORTRANFLAGS $CPPFLAGS $_CPPDEFFLAGS $_FORTRANINCFLAGS $_FORTRANMODFLAG $SOURCES - FORTRANSUFFIXES = ['.f', '.for', '.ftn', '.fpp', '.FPP', '.F', '.FOR', '.FTN', '.f77', '.F77', '.f90', '.F90', '.f95', '.F95', '.f03', '.F03', '.f08', '.F08'] - FRAMEWORKPATH = - FRAMEWORKS = - File = - GS = gs - GSCOM = $GS $GSFLAGS -sOutputFile=$TARGET $SOURCES - GSFLAGS = -dNOPAUSE -dBATCH -sDEVICE=pdfwrite - HOST_ARCH = None - HOST_OS = None - IDLSUFFIXES = ['.idl', '.IDL'] - INCF03PREFIX = -I - INCF03SUFFIX = - INCF08PREFIX = -I - INCF08SUFFIX = - INCF77PREFIX = -I - INCF77SUFFIX = - INCF90PREFIX = -I - INCF90SUFFIX = - INCF95PREFIX = -I - INCF95SUFFIX = - INCFORTRANPREFIX = -I - INCFORTRANSUFFIX = - INCPREFIX = -I - INCSUFFIX = - JAR = jar - JARCOM = ${TEMPFILE('$_JARCOM','$JARCOMSTR')} - JARFLAGS = cf - JARSUFFIX = .jar - JAVABOOTCLASSPATH = [] - JAVAC = javac - JAVACCOM = ${TEMPFILE('$_JAVACCOM','$JAVACCOMSTR')} - JAVACFLAGS = - JAVACLASSPATH = [] - JAVACLASSSUFFIX = .class - JAVAH = javah - JAVAHCOM = $JAVAH $JAVAHFLAGS $_JAVAHOUTFLAG $_JAVAHCLASSPATH ${SOURCES.attributes.java_classname} - JAVAHFLAGS = - JAVAINCLUDES = ['/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.222.b03-1.el7.x86_64/include', '/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.222.b03-1.el7.x86_64/include/linux', '/usr/lib/jvm/java-openjdk/include', '/usr/lib/jvm/java-openjdk/include/linux', '/usr/lib/jvm/java-1.8.0/include', '/usr/lib/jvm/java-1.8.0/include/linux', '/usr/lib/jvm/java-1.8.0-openjdk/include', '/usr/lib/jvm/java-1.8.0-openjdk/include/linux'] - JAVASOURCEPATH = [] - JAVASUFFIX = .java - LATEX = latex - LATEXCOM = cd ${TARGET.dir} && $LATEX $LATEXFLAGS ${SOURCE.file} - LATEXFLAGS = -interaction=nonstopmode -recorder - LATEXRETRIES = 4 - LATEXSUFFIXES = ['.tex', '.ltx', '.latex'] - LDMODULE = $SHLINK - LDMODULECOM = $LDMODULE -o $TARGET $LDMODULEFLAGS $__LDMODULEVERSIONFLAGS $__RPATH $SOURCES $_LIBDIRFLAGS $_LIBFLAGS - LDMODULEEMITTER = [] - LDMODULEFLAGS = $SHLINKFLAGS - LDMODULENOVERSIONSYMLINKS = $SHLIBNOVERSIONSYMLINKS - LDMODULEPREFIX = $SHLIBPREFIX - LDMODULESUFFIX = $SHLIBSUFFIX - LDMODULEVERSION = $SHLIBVERSION - LDMODULEVERSIONFLAGS = $SHLIBVERSIONFLAGS - LEX = flex - LEXCOM = $LEX $LEXFLAGS -t $SOURCES > $TARGET - LEXFLAGS = - LIBDIRPREFIX = -L - LIBDIRSUFFIX = - LIBLINKPREFIX = -l - LIBLINKSUFFIX = - LIBPATH = ['/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib', '/apps/compiler/gcc/8.3.0/lib64', '/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0', '/opt/cray/lib64', '/usr/lib64', '/apps/applications/PYTHON/2.7/lib', '/usr/lib', '/usr/local/lib'] - LIBPREFIX = lib - LIBPREFIXES = ['$LIBPREFIX'] - LIBSUFFIX = .a - LIBSUFFIXES = ['$LIBSUFFIX', '$SHLIBSUFFIX'] - LINK = $SMARTLINK - LINKCALLBACKS = {'VersionedShLibSuffix': , 'VersionedShLibSymlinks': , 'VersionedLdModSuffix': , 'VersionedLdModSoname': , 'VersionedLdModSymlinks': , 'VersionedShLibName': , 'VersionedShLibSoname': , 'VersionedLdModName': } - LINKCOM = $LINK -o $TARGET $LINKFLAGS $__RPATH $SOURCES $_LIBDIRFLAGS $_LIBFLAGS - LINKFLAGS = -Wl,--disable-new-dtags - LdModSonameGenerator = - M4 = m4 - M4COM = cd ${SOURCE.rsrcdir} && $M4 $M4FLAGS < ${SOURCE.file} > ${TARGET.abspath} - M4FLAGS = -E - MAKEACRONYMS = makeindex - MAKEACRONYMSCOM = cd ${TARGET.dir} && $MAKEACRONYMS ${SOURCE.filebase}.acn $MAKEACRONYMSFLAGS -o ${SOURCE.filebase}.acr - MAKEACRONYMSFLAGS = -s ${MAKEACRONYMSSTYLE} -t ${SOURCE.filebase}.alg - MAKEACRONYMSSTYLE = ${SOURCE.filebase}.ist - MAKEGLOSSARY = makeindex - MAKEGLOSSARYCOM = cd ${TARGET.dir} && $MAKEGLOSSARY ${SOURCE.filebase}.glo $MAKEGLOSSARYFLAGS -o ${SOURCE.filebase}.gls - MAKEGLOSSARYFLAGS = -s ${MAKEGLOSSARYSTYLE} -t ${SOURCE.filebase}.glg - MAKEGLOSSARYSTYLE = ${SOURCE.filebase}.ist - MAKEINDEX = makeindex - MAKEINDEXCOM = cd ${TARGET.dir} && $MAKEINDEX $MAKEINDEXFLAGS ${SOURCE.file} - MAKEINDEXFLAGS = - MAKENCL = makeindex - MAKENCLCOM = cd ${TARGET.dir} && $MAKENCL ${SOURCE.filebase}.nlo $MAKENCLFLAGS -o ${SOURCE.filebase}.nls - MAKENCLFLAGS = -s ${MAKENCLSTYLE} -t ${SOURCE.filebase}.nlg - MAKENCLSTYLE = nomencl.ist - MAKENEWGLOSSARY = makeindex - MAKENEWGLOSSARYCOM = cd ${TARGET.dir} && $MAKENEWGLOSSARY - MAXLINELENGTH = 128072 - OBJPREFIX = - OBJSUFFIX = .o - PDFCOM = ['$DVIPDFCOM'] - PDFLATEX = pdflatex - PDFLATEXCOM = cd ${TARGET.dir} && $PDFLATEX $PDFLATEXFLAGS ${SOURCE.file} - PDFLATEXFLAGS = -interaction=nonstopmode -recorder - PDFPREFIX = - PDFSUFFIX = .pdf - PDFTEX = pdftex - PDFTEXCOM = cd ${TARGET.dir} && $PDFTEX $PDFTEXFLAGS ${SOURCE.file} - PDFTEXFLAGS = -interaction=nonstopmode -recorder - PIPE_BUILD = True - PLATFORM = posix - PROGPREFIX = - PROGSUFFIX = - PSCOM = cd ${TARGET.dir} && $DVIPS $DVIPSFLAGS -o ${TARGET.file} ${SOURCE.file} - PSPAWN = - PSPREFIX = - PSSUFFIX = .ps - PSTDERR = - PSTDOUT = - RANLIB = ranlib - RANLIBCOM = $RANLIB $RANLIBFLAGS $TARGET - RANLIBFLAGS = - RDirs = - RMIC = rmic - RMICCOM = $RMIC $RMICFLAGS -d ${TARGET.attributes.java_lookupdir} -classpath ${SOURCE.attributes.java_classdir} ${SOURCES.attributes.java_classname} - RMICFLAGS = - RPATHPREFIX = -Wl,-rpath= - RPATHSUFFIX = - RPCGEN = rpcgen - RPCGENCLIENTFLAGS = - RPCGENFLAGS = - RPCGENHEADERFLAGS = - RPCGENSERVICEFLAGS = - RPCGENXDRFLAGS = - RPM = LC_ALL=C rpmbuild - RPMCOM = build_rpm(target, source, env) - RPMFLAGS = -ta - RPMSUFFIX = .rpm - SCANNERS = [] - SHCC = $CC - SHCCCOM = $SHCC -o $TARGET -c $SHCFLAGS $SHCCFLAGS $_CCCOMCOM $SOURCES - SHCCFLAGS = $CCFLAGS -fPIC - SHCFLAGS = $CFLAGS - SHCXX = $CXX - SHCXXCOM = $SHCXX -o $TARGET -c $SHCXXFLAGS $SHCCFLAGS $_CCCOMCOM $SOURCES - SHCXXFLAGS = $CXXFLAGS - SHDC = $DC - SHDCOM = $DC $_DINCFLAGS $_DVERFLAGS $_DDEBUGFLAGS $_DFLAGS -c -fPIC -of$TARGET $SOURCES - SHDLIBVERSION = $SHLIBVERSION - SHDLIBVERSIONFLAGS = [] - SHDLINK = $DC - SHDLINKCOM = $DLINK -of$TARGET $SHDLINKFLAGS $__SHDLIBVERSIONFLAGS $__DRPATH $SOURCES $_DLIBDIRFLAGS $_DLIBFLAGS - SHDLINKFLAGS = $DLINKFLAGS -shared -defaultlib=libphobos2.so - SHELL = sh - SHF03 = $F03 - SHF03COM = $SHF03 -o $TARGET -c $SHF03FLAGS $_F03INCFLAGS $_FORTRANMODFLAG $SOURCES - SHF03FLAGS = $F03FLAGS -fPIC - SHF03PPCOM = $SHF03 -o $TARGET -c $SHF03FLAGS $CPPFLAGS $_CPPDEFFLAGS $_F03INCFLAGS $_FORTRANMODFLAG $SOURCES - SHF08 = $F08 - SHF08COM = $SHF08 -o $TARGET -c $SHF08FLAGS $_F08INCFLAGS $_FORTRANMODFLAG $SOURCES - SHF08FLAGS = $F08FLAGS -fPIC - SHF08PPCOM = $SHF08 -o $TARGET -c $SHF08FLAGS $CPPFLAGS $_CPPDEFFLAGS $_F08INCFLAGS $_FORTRANMODFLAG $SOURCES - SHF77 = $F77 - SHF77COM = $SHF77 -o $TARGET -c $SHF77FLAGS $_F77INCFLAGS $SOURCES - SHF77FLAGS = $F77FLAGS -fPIC - SHF77PPCOM = $SHF77 -o $TARGET -c $SHF77FLAGS $CPPFLAGS $_CPPDEFFLAGS $_F77INCFLAGS $SOURCES - SHF90 = $F90 - SHF90COM = $SHF90 -o $TARGET -c $SHF90FLAGS $_F90INCFLAGS $_FORTRANMODFLAG $SOURCES - SHF90FLAGS = $F90FLAGS -fPIC - SHF90PPCOM = $SHF90 -o $TARGET -c $SHF90FLAGS $CPPFLAGS $_CPPDEFFLAGS $_F90INCFLAGS $_FORTRANMODFLAG $SOURCES - SHF95 = $F95 - SHF95COM = $SHF95 -o $TARGET -c $SHF95FLAGS $_F95INCFLAGS $_FORTRANMODFLAG $SOURCES - SHF95FLAGS = $F95FLAGS -fPIC - SHF95PPCOM = $SHF95 -o $TARGET -c $SHF95FLAGS $CPPFLAGS $_CPPDEFFLAGS $_F95INCFLAGS $_FORTRANMODFLAG $SOURCES - SHFORTRAN = $FORTRAN - SHFORTRANCOM = $SHFORTRAN -o $TARGET -c $SHFORTRANFLAGS $_FORTRANINCFLAGS $_FORTRANMODFLAG $SOURCES - SHFORTRANFLAGS = $FORTRANFLAGS -fPIC - SHFORTRANPPCOM = $SHFORTRAN -o $TARGET -c $SHFORTRANFLAGS $CPPFLAGS $_CPPDEFFLAGS $_FORTRANINCFLAGS $_FORTRANMODFLAG $SOURCES - SHLIBEMITTER = [] - SHLIBPREFIX = $LIBPREFIX - SHLIBSUFFIX = .so - SHLIBVERSIONFLAGS = -Wl,-Bsymbolic - SHLINK = $LINK - SHLINKCOM = $SHLINK -o $TARGET $SHLINKFLAGS $__SHLIBVERSIONFLAGS $__RPATH $SOURCES $_LIBDIRFLAGS $_LIBFLAGS - SHLINKFLAGS = $LINKFLAGS -shared - SHOBJPREFIX = $OBJPREFIX - SHOBJSUFFIX = .os - SMARTLINK = - SPAWN = - STATIC_AND_SHARED_OBJECTS_ARE_THE_SAME = 0 - SWIG = swig - SWIGCFILESUFFIX = _wrap$CFILESUFFIX - SWIGCOM = $SWIG -o $TARGET ${_SWIGOUTDIR} ${_SWIGINCFLAGS} $SWIGFLAGS $SOURCES - SWIGCXXFILESUFFIX = _wrap$CXXFILESUFFIX - SWIGDIRECTORSUFFIX = _wrap.h - SWIGFLAGS = - SWIGINCPREFIX = -I - SWIGINCSUFFIX = - SWIGPATH = [] - SWIGVERSION = 3.0.12 - ShLibSonameGenerator = - TAR = tar - TARCOM = $TAR $TARFLAGS -f $TARGET $SOURCES - TARFLAGS = -c - TARGET_ARCH = None - TARGET_OS = None - TARSUFFIX = .tar - TEMPFILE = - TEMPFILEPREFIX = @ - TEX = tex - TEXCOM = cd ${TARGET.dir} && $TEX $TEXFLAGS ${SOURCE.file} - TEXFLAGS = -interaction=nonstopmode -recorder - TOOLS = ['default', 'gnulink', 'gcc', 'g++', 'gfortran', 'gas', 'ar', 'dmd', 'm4', 'rpm', 'filesystem', 'lex', 'yacc', 'rpcgen', 'swig', 'jar', 'javac', 'javah', 'rmic', 'dvipdf', 'dvips', 'gs', 'tex', 'latex', 'pdflatex', 'pdftex', 'tar', 'zip'] - WIXCANDLE = candle.exe - WIXLIGHT = light.exe - YACC = bison - YACCCOM = $YACC $YACCFLAGS -o $TARGET $SOURCES - YACCFLAGS = - YACCHFILESUFFIX = .h - YACCHXXFILESUFFIX = .hpp - YACCVCGFILESUFFIX = .vcg - ZIP = zip - ZIPCOM = zip(target, source, env) - ZIPCOMPRESSION = 8 - ZIPFLAGS = - ZIPROOT = - ZIPSUFFIX = .zip - _CCCOMCOM = $CPPFLAGS $_CPPDEFFLAGS $_CPPINCFLAGS - _CPPDEFFLAGS = ${_defines(CPPDEFPREFIX, CPPDEFINES, CPPDEFSUFFIX, __env__)} - _CPPINCFLAGS = $( ${_concat(INCPREFIX, CPPPATH, INCSUFFIX, __env__, RDirs, TARGET, SOURCE)} $) - _DDEBUGFLAGS = ${_concat(DDEBUGPREFIX, DDEBUG, DDEBUGSUFFIX, __env__)} - _DFLAGS = ${_concat(DFLAGPREFIX, DFLAGS, DFLAGSUFFIX, __env__)} - _DINCFLAGS = ${_concat(DINCPREFIX, DPATH, DINCSUFFIX, __env__, RDirs, TARGET, SOURCE)} - _DLIBDIRFLAGS = ${_concat(DLIBDIRPREFIX, LIBPATH, DLIBDIRSUFFIX, __env__, RDirs, TARGET, SOURCE)} - _DLIBFLAGS = ${_stripixes(DLIBLINKPREFIX, LIBS, DLIBLINKSUFFIX, LIBPREFIXES, LIBSUFFIXES, __env__)} - _DRPATH = ${_concat(DRPATHPREFIX, RPATH, DRPATHSUFFIX, __env__)} - _DVERFLAGS = ${_concat(DVERPREFIX, DVERSIONS, DVERSUFFIX, __env__)} - _F03INCFLAGS = $( ${_concat(INCF03PREFIX, F03PATH, INCF03SUFFIX, __env__, RDirs, TARGET, SOURCE)} $) - _F08INCFLAGS = $( ${_concat(INCF08PREFIX, F08PATH, INCF08SUFFIX, __env__, RDirs, TARGET, SOURCE)} $) - _F77INCFLAGS = $( ${_concat(INCF77PREFIX, F77PATH, INCF77SUFFIX, __env__, RDirs, TARGET, SOURCE)} $) - _F90INCFLAGS = $( ${_concat(INCF90PREFIX, F90PATH, INCF90SUFFIX, __env__, RDirs, TARGET, SOURCE)} $) - _F95INCFLAGS = $( ${_concat(INCF95PREFIX, F95PATH, INCF95SUFFIX, __env__, RDirs, TARGET, SOURCE)} $) - _FORTRANINCFLAGS = $( ${_concat(INCFORTRANPREFIX, FORTRANPATH, INCFORTRANSUFFIX, __env__, RDirs, TARGET, SOURCE)} $) - _FORTRANMODFLAG = $( ${_concat(FORTRANMODDIRPREFIX, FORTRANMODDIR, FORTRANMODDIRSUFFIX, __env__, RDirs, TARGET, SOURCE)} $) - _JARCOM = $JAR $_JARFLAGS $TARGET $_JARMANIFEST $_JARSOURCES - _JARFLAGS = - _JARMANIFEST = - _JARSOURCES = - _JAVABOOTCLASSPATH = ${_javapathopt("-bootclasspath", "JAVABOOTCLASSPATH")} - _JAVACCOM = $JAVAC $JAVACFLAGS $_JAVABOOTCLASSPATH $_JAVACLASSPATH -d ${TARGET.attributes.java_classdir} $_JAVASOURCEPATH $SOURCES - _JAVACLASSPATH = ${_javapathopt("-classpath", "JAVACLASSPATH")} - _JAVAHCLASSPATH = - _JAVAHOUTFLAG = - _JAVASOURCEPATH = ${_javapathopt("-sourcepath", "JAVASOURCEPATH", "_JAVASOURCEPATHDEFAULT")} - _JAVASOURCEPATHDEFAULT = ${TARGET.attributes.java_sourcedir} - _LDMODULESONAME = ${LdModSonameGenerator(__env__,TARGET)} - _LDMODULEVERSIONFLAGS = $LDMODULEVERSIONFLAGS -Wl,-soname=$_LDMODULESONAME - _LIBDIRFLAGS = $( ${_concat(LIBDIRPREFIX, LIBPATH, LIBDIRSUFFIX, __env__, RDirs, TARGET, SOURCE)} $) - _LIBFLAGS = ${_stripixes(LIBLINKPREFIX, LIBS, LIBLINKSUFFIX, LIBPREFIXES, LIBSUFFIXES, __env__)} - _RPATH = ${_concat(RPATHPREFIX, RPATH, RPATHSUFFIX, __env__)} - _SHDLIBSONAME = ${DShLibSonameGenerator(__env__,TARGET)} - _SHDLIBVERSIONFLAGS = $SHDLIBVERSIONFLAGS -L-soname=$_SHDLIBSONAME - _SHLIBSONAME = ${ShLibSonameGenerator(__env__,TARGET)} - _SHLIBVERSIONFLAGS = $SHLIBVERSIONFLAGS -Wl,-soname=$_SHLIBSONAME - _SWIGINCFLAGS = $( ${_concat(SWIGINCPREFIX, SWIGPATH, SWIGINCSUFFIX, __env__, RDirs, TARGET, SOURCE)} $) - _SWIGOUTDIR = ${"-outdir \"%s\"" % SWIGOUTDIR} - __DRPATH = $_DRPATH - __DSHLIBVERSIONFLAGS = ${__libversionflags(__env__,"DSHLIBVERSION","_DSHLIBVERSIONFLAGS")} - __LDMODULEVERSIONFLAGS = ${__libversionflags(__env__,"LDMODULEVERSION","_LDMODULEVERSIONFLAGS")} - __RPATH = $_RPATH - __SHLIBVERSIONFLAGS = ${__libversionflags(__env__,"SHLIBVERSION","_SHLIBVERSIONFLAGS")} - __libversionflags = - _concat = - _defines = - _javapathopt = - _stripixes = ------------------------------------------------------------------------ Running versioning script ... Release package detected, using rosetta/main/.release.json to acquire version information... Done. (0.0 seconds) file ./options.dox being updated file ./full-options-list.md being updated Number of option files updated: 2 Total 4580 options. Finished updating ResidueProperty code -- no changes needed Finished updating VariantType code -- no changes needed scons: done reading SConscript files. scons: Building targets ... /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/AbinitioRelax.o -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux src/apps/public/AbinitioRelax.cc /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/devel/init.os -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux src/devel/init.cc /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/protocols/init/init.os -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux src/protocols/init/init.cc /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/protocols/init/register1.os -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux src/protocols/init/register1.cc /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/protocols/init/register2.os -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux src/protocols/init/register2.cc /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/protocols/init/register3.os -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux src/protocols/init/register3.cc /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/protocols/init/register4.os -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/8.3 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux src/protocols/init/register4.cc . . . /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/cifparse/CifParser.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DPOSIX_MISTAKE -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/cifparse/CifParser.c /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/cifparse/CifScanner.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DPOSIX_MISTAKE -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/cifparse/CifScanner.c /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/cifparse/DICParser.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DPOSIX_MISTAKE -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/cifparse/DICParser.c /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/cifparse/DICScanner.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DPOSIX_MISTAKE -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/cifparse/DICScanner.c : In function 'yy_get_next_buffer': :1470:20: warning: implicit declaration of function 'read'; did you mean 'fread'? [-Wimplicit-function-declaration] :1960:3: note: in expansion of macro 'YY_INPUT' /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/cifparse/regcomp.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DPOSIX_MISTAKE -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/cifparse/regcomp.c /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/cifparse/regerror.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DPOSIX_MISTAKE -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/cifparse/regerror.c /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/cifparse/regexec.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DPOSIX_MISTAKE -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/cifparse/regexec.c : In function 'yy_get_next_buffer': :1503:20: warning: implicit declaration of function 'read'; did you mean 'fread'? [-Wimplicit-function-declaration] :2022:3: note: in expansion of macro 'YY_INPUT' /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/cifparse/regfree.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DPOSIX_MISTAKE -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/cifparse/regfree.c /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/libxml2/buf.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DTRIO_HAVE_CONFIG_H -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/libxml2/buf.c /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/libxml2/c14n.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DTRIO_HAVE_CONFIG_H -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/libxml2/c14n.c /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/libxml2/catalog.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DTRIO_HAVE_CONFIG_H -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/libxml2/catalog.c /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/libxml2/chvalid.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DTRIO_HAVE_CONFIG_H -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/libxml2/chvalid.c /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/libxml2/debugXML.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DTRIO_HAVE_CONFIG_H -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/libxml2/debugXML.c /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/libxml2/dict.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DTRIO_HAVE_CONFIG_H -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/libxml2/dict.c /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/libxml2/DOCBparser.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DTRIO_HAVE_CONFIG_H -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/libxml2/DOCBparser.c /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/libxml2/encoding.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DTRIO_HAVE_CONFIG_H -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/libxml2/encoding.c /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/libxml2/entities.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DTRIO_HAVE_CONFIG_H -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/libxml2/entities.c /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/libxml2/error.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DTRIO_HAVE_CONFIG_H -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/libxml2/error.c /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/libxml2/globals.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DTRIO_HAVE_CONFIG_H -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/libxml2/globals.c /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/libxml2/hash.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DTRIO_HAVE_CONFIG_H -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/libxml2/hash.c /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/libxml2/HTMLparser.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DTRIO_HAVE_CONFIG_H -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/libxml2/HTMLparser.c /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/libxml2/HTMLtree.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DTRIO_HAVE_CONFIG_H -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/libxml2/HTMLtree.c /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/libxml2/legacy.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DTRIO_HAVE_CONFIG_H -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/libxml2/legacy.c /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/libxml2/list.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DTRIO_HAVE_CONFIG_H -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/libxml2/list.c /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/libxml2/nanoftp.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DTRIO_HAVE_CONFIG_H -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/libxml2/nanoftp.c /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/libxml2/nanohttp.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DTRIO_HAVE_CONFIG_H -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/libxml2/nanohttp.c /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/libxml2/parser.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DTRIO_HAVE_CONFIG_H -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/libxml2/parser.c /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/libxml2/parserInternals.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DTRIO_HAVE_CONFIG_H -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/libxml2/parserInternals.c /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/libxml2/pattern.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DTRIO_HAVE_CONFIG_H -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/libxml2/pattern.c /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/libxml2/relaxng.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DTRIO_HAVE_CONFIG_H -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/libxml2/relaxng.c /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/libxml2/SAX2.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DTRIO_HAVE_CONFIG_H -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/libxml2/SAX2.c /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/libxml2/SAX.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DTRIO_HAVE_CONFIG_H -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/libxml2/SAX.c /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/libxml2/schematron.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DTRIO_HAVE_CONFIG_H -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/libxml2/schematron.c /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/libxml2/threads.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DTRIO_HAVE_CONFIG_H -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/libxml2/threads.c /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/libxml2/tree.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DTRIO_HAVE_CONFIG_H -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/libxml2/tree.c /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/libxml2/trio.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DTRIO_HAVE_CONFIG_H -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/libxml2/trio.c /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/libxml2/trionan.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DTRIO_HAVE_CONFIG_H -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/libxml2/trionan.c /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/libxml2/triostr.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DTRIO_HAVE_CONFIG_H -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/libxml2/triostr.c /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/libxml2/uri.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DTRIO_HAVE_CONFIG_H -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/libxml2/uri.c /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/libxml2/valid.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DTRIO_HAVE_CONFIG_H -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/libxml2/valid.c /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/libxml2/xinclude.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DTRIO_HAVE_CONFIG_H -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/libxml2/xinclude.c /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/libxml2/xlink.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DTRIO_HAVE_CONFIG_H -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/libxml2/xlink.c /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/libxml2/xmlIO.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DTRIO_HAVE_CONFIG_H -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/libxml2/xmlIO.c /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/libxml2/xmlmemory.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DTRIO_HAVE_CONFIG_H -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/libxml2/xmlmemory.c external/libxml2/triostr.c: In function 'trio_equal': external/libxml2/triostr.c:411:20: warning: implicit declaration of function 'strcasecmp'; did you mean 'strncmp'? [-Wimplicit-function-declaration] return (0 == strcasecmp(first, second)); ^~~~~~~~~~ strncmp external/libxml2/triostr.c: In function 'trio_equal_max': external/libxml2/triostr.c:534:20: warning: implicit declaration of function 'strncasecmp'; did you mean 'strncmp'? [-Wimplicit-function-declaration] return (0 == strncasecmp(first, second, max)); ^~~~~~~~~~~ strncmp /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/libxml2/xmlmodule.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DTRIO_HAVE_CONFIG_H -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/libxml2/xmlmodule.c /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/libxml2/xmlreader.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DTRIO_HAVE_CONFIG_H -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/libxml2/xmlreader.c /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/libxml2/xmlregexp.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DTRIO_HAVE_CONFIG_H -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/libxml2/xmlregexp.c /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/libxml2/xmlsave.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DTRIO_HAVE_CONFIG_H -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/libxml2/xmlsave.c /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicc -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/libxml2/xmlschemas.os -c -std=c99 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DTRIO_HAVE_CONFIG_H -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/libxml2/xmlschemas.c . . . /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/rdkit/ForceField/MMFF/Nonbonded.os -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/rdkit/ForceField/MMFF/Nonbonded.cpp /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/rdkit/ForceField/MMFF/OopBend.os -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/rdkit/ForceField/MMFF/OopBend.cpp /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/rdkit/ForceField/MMFF/Params.os -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/rdkit/ForceField/MMFF/Params.cpp /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/rdkit/ForceField/MMFF/PositionConstraint.os -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/rdkit/ForceField/MMFF/PositionConstraint.cpp /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/rdkit/ForceField/MMFF/StretchBend.os -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/rdkit/ForceField/MMFF/StretchBend.cpp /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/rdkit/ForceField/MMFF/TorsionAngle.os -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/rdkit/ForceField/MMFF/TorsionAngle.cpp external/rdkit/GraphMol/FMCS/MaximumCommonSubgraph.cpp: In member function 'void RDKit::FMCS::MaximumCommonSubgraph::makeInitialSeeds()': external/rdkit/GraphMol/FMCS/MaximumCommonSubgraph.cpp:337:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr initialSeedMolecule( ^~~~~~~~ In file included from /apps/compiler/gcc/8.3.0/include/c++/8.3.0/bits/locale_conv.h:41, from /apps/compiler/gcc/8.3.0/include/c++/8.3.0/locale:43, from external/boost_submod/boost/iostreams/detail/config/codecvt.hpp:63, from external/boost_submod/boost/iostreams/positioning.hpp:21, from external/boost_submod/boost/iostreams/seek.hpp:23, from external/boost_submod/boost/iostreams/detail/adapter/non_blocking_adapter.hpp:13, from external/boost_submod/boost/iostreams/close.hpp:19, from external/boost_submod/boost/iostreams/operations.hpp:16, from external/boost_submod/boost/iostreams/detail/adapter/device_adapter.hpp:24, from external/boost_submod/boost/iostreams/tee.hpp:18, from external/rdkit/RDGeneral/RDLog.h:17, from external/rdkit/RDGeneral/Invariant.h:22, from external/rdkit/GraphMol/FMCS/../Atom.h:24, from external/rdkit/GraphMol/FMCS/../QueryAtom.h:14, from external/rdkit/GraphMol/FMCS/MaximumCommonSubgraph.cpp:13: /apps/compiler/gcc/8.3.0/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/rdkit/ForceField/MMFF/TorsionConstraint.os -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/rdkit/ForceField/MMFF/TorsionConstraint.cpp /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/rdkit/GraphMol/ForceFieldHelpers/UFF/AtomTyper.os -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/rdkit/GraphMol/ForceFieldHelpers/UFF/AtomTyper.cpp /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/rdkit/GraphMol/ForceFieldHelpers/UFF/Builder.os -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/rdkit/GraphMol/ForceFieldHelpers/UFF/Builder.cpp /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.os -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.cpp . . . /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/rdkit/GraphMol/FileParsers/SequenceWriters.os -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/rdkit/GraphMol/FileParsers/SequenceWriters.cpp /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/rdkit/GraphMol/FileParsers/SmilesMolSupplier.os -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/rdkit/GraphMol/FileParsers/SmilesMolSupplier.cpp /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/rdkit/GraphMol/FileParsers/SmilesWriter.os -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/rdkit/GraphMol/FileParsers/SmilesWriter.cpp /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/rdkit/GraphMol/FileParsers/TDTMolSupplier.os -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/rdkit/GraphMol/FileParsers/TDTMolSupplier.cpp /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/rdkit/GraphMol/FileParsers/TDTWriter.os -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/rdkit/GraphMol/FileParsers/TDTWriter.cpp /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/rdkit/GraphMol/FileParsers/TplFileParser.os -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/rdkit/GraphMol/FileParsers/TplFileParser.cpp external/rdkit/GraphMol/MMPA/MMPA.cpp: In function 'bool RDKit::MMPA::fragmentMol(const RDKit::ROMol&, std::vector, boost::shared_ptr > >&, unsigned int, unsigned int, unsigned int, const string&)': external/rdkit/GraphMol/MMPA/MMPA.cpp:468:8: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr smarts((const ROMol*)SmartsToMol(pattern)); ^~~~~~~~ In file included from /apps/compiler/gcc/8.3.0/include/c++/8.3.0/memory:80, from external/boost_submod/boost/smart_ptr/scoped_ptr.hpp:22, from external/boost_submod/boost/scoped_ptr.hpp:13, from external/boost_submod/boost/smart_ptr.hpp:17, from external/rdkit/GraphMol/MMPA/../MolOps.h:19, from external/rdkit/GraphMol/MMPA/MMPA.cpp:15: /apps/compiler/gcc/8.3.0/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/rdkit/GraphMol/FileParsers/TplFileWriter.os -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/rdkit/GraphMol/FileParsers/TplFileWriter.cpp /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/rdkit/GraphMol/FileParsers/XYZFileWriter.os -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/rdkit/GraphMol/FileParsers/XYZFileWriter.cpp /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/rdkit/GraphMol/SubstructLibrary/PatternFactory.os -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/rdkit/GraphMol/SubstructLibrary/PatternFactory.cpp /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/external/release/linux/3.10/64/x86/gcc/8.3/mpi/rdkit/GraphMol/SubstructLibrary/SubstructLibrary.os -c -std=c++0x -ffor-scope -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -pipe -Wno-long-long -Wno-strict-aliasing -march=core2 -mtune=generic -O3 -ffast-math -fno-finite-math-only -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -DNDEBUG -DUSEMPI -Iexternal/include external/rdkit/GraphMol/SubstructLibrary/SubstructLibrary.cpp . . . /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/zinc2_homodimer_design.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/design/zinc2_homodimer_design.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/mp_range_relax.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/membrane/mp_range_relax.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/ensemble_analysis.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/analysis/ensemble_analysis.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/FlexPepDocking.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/flexpep_docking/FlexPepDocking.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/antibody_H3.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/antibody/antibody_H3.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/DNA_methylation.mpi.linuxgccrelease" as "bin/DNA_methylation.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/mp_span_from_pdb.mpi.linuxgccrelease" as "bin/mp_span_from_pdb.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/pmut_scan_parallel.mpi.linuxgccrelease" as "bin/pmut_scan_parallel.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/calc_nmr_tensor.mpi.linuxgccrelease" as "bin/calc_nmr_tensor.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/enzyme_design.mpi.linuxgccrelease" as "bin/enzyme_design.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/antibody_graft.mpi.linuxgccrelease" as "bin/antibody_graft.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/homodimer_maker.mpi.linuxgccrelease" as "bin/homodimer_maker.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/recces_turner.mpi.linuxgccrelease" as "bin/recces_turner.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/antibody_designer.mpi.linuxgccrelease" as "bin/antibody_designer.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/interface_energy.mpi.linuxgccrelease" as "bin/interface_energy.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/restype_converter.mpi.linuxgccrelease" as "bin/restype_converter.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/minirosetta_graphics.mpi.linuxgccrelease" as "bin/minirosetta_graphics.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/supercharge.mpi.linuxgccrelease" as "bin/supercharge.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/validate_silent.mpi.linuxgccrelease" as "bin/validate_silent.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/cluster_alns.mpi.linuxgccrelease" as "bin/cluster_alns.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/rna_idealize.mpi.linuxgccrelease" as "bin/rna_idealize.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/report_hbonds_for_plugin.mpi.linuxgccrelease" as "bin/report_hbonds_for_plugin.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/erraser2.mpi.linuxgccrelease" as "bin/erraser2.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/ligand_dock.mpi.linuxgccrelease" as "bin/ligand_dock.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/sequence_tolerance.mpi.linuxgccrelease" as "bin/sequence_tolerance.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/mp_seqrecov.mpi.linuxgccrelease" as "bin/mp_seqrecov.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/snugdock.mpi.linuxgccrelease" as "bin/snugdock.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/build_full_model.mpi.linuxgccrelease" as "bin/build_full_model.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/calculate_sasa.mpi.linuxgccrelease" as "bin/calculate_sasa.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/partial_thread.mpi.linuxgccrelease" as "bin/partial_thread.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/stepwise.mpi.linuxgccrelease" as "bin/stepwise.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/energy_based_clustering.mpi.linuxgccrelease" as "bin/energy_based_clustering.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/packing_angle.mpi.linuxgccrelease" as "bin/packing_angle.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/shobuns.mpi.linuxgccrelease" as "bin/shobuns.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/validate_database.mpi.linuxgccrelease" as "bin/validate_database.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/per_residue_energies.mpi.linuxgccrelease" as "bin/per_residue_energies.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/rosetta_scripts.mpi.linuxgccrelease" as "bin/rosetta_scripts.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/select_best_unique_ligand_poses.mpi.linuxgccrelease" as "bin/select_best_unique_ligand_poses.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/rna_thread_and_minimize.mpi.linuxgccrelease" as "bin/rna_thread_and_minimize.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/glycan_info.mpi.linuxgccrelease" as "bin/glycan_info.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/mr_protocols.mpi.linuxgccrelease" as "bin/mr_protocols.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/pocket_measure.mpi.linuxgccrelease" as "bin/pocket_measure.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/score_aln2.mpi.linuxgccrelease" as "bin/score_aln2.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/FloppyTail.mpi.linuxgccrelease" as "bin/FloppyTail.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/contactMap.mpi.linuxgccrelease" as "bin/contactMap.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/minimize_with_cst.mpi.linuxgccrelease" as "bin/minimize_with_cst.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/grower_prep.mpi.linuxgccrelease" as "bin/grower_prep.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/SymDock.mpi.linuxgccrelease" as "bin/SymDock.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/torsional_potential_corrections.mpi.linuxgccrelease" as "bin/torsional_potential_corrections.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/minirosetta.mpi.linuxgccrelease" as "bin/minirosetta.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/zinc_statistic_generator.mpi.linuxgccrelease" as "bin/zinc_statistic_generator.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/pH_protocol.mpi.linuxgccrelease" as "bin/pH_protocol.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/cartesian_ddg.mpi.linuxgccrelease" as "bin/cartesian_ddg.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/pepspec_anchor_dock.mpi.linuxgccrelease" as "bin/pepspec_anchor_dock.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/idealize_jd2.mpi.linuxgccrelease" as "bin/idealize_jd2.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/minimize.mpi.linuxgccrelease" as "bin/minimize.mpi.linuxgccrelease" /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/dock_glycans.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/carbohydrates/dock_glycans.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/glycosyltransfer.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/post-translational_modification/glycosyltransfer.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/pocket_relax.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/pocket/pocket_relax.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/FiberDiffractionFreeSet.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/fiber_diffraction/FiberDiffractionFreeSet.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/UnfoldedStateEnergyCalculator.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/ncaa_utilities/UnfoldedStateEnergyCalculator.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/drrafter_error_estimation.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/DRRAFTER/drrafter_error_estimation.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/match.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/match/match.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/ensemble_generator_score12_sidechain_ver2.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/ddg/ensemble_generator_score12_sidechain_ver2.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/cst_info.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/analysis/cst_info.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/antibody.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/antibody/antibody.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/spheregrinder.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/comparative_modeling/spheregrinder.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/mp_lipid_acc.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/membrane/mp_lipid_acc.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/generate_starting_zinc_sites.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/sewing/ligand_sewing_tools/generate_starting_zinc_sites.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/MakeRotLib.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/ncaa_utilities/MakeRotLib.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/helix_from_sequence.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/membrane/helix_from_sequence.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/tcrmodel.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/tcr/tcrmodel.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/relax.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/relax.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/swa_rna_util.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/stepwise/legacy/swa_rna_util.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/helical_bundle_predict.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/helical_bundle/helical_bundle_predict.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/gen_lig_grids.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/match/gen_lig_grids.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/fixbb.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/design/fixbb.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/backrub.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/backrub.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/simple_cycpep_predict.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/cyclic_peptide/simple_cycpep_predict.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/calibur.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/clustering/calibur.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/analyze_base_pairing.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/rna/util/analyze_base_pairing.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/dump_capped_residue.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/dump_capped_residue.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/performance_benchmark.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/benchmark/performance/performance_benchmark.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/UBQ_Gp_CYD-CYD.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/scenarios/chemically_conjugated_docking/UBQ_Gp_CYD-CYD.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/metal_site_finder.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/sewing/ligand_sewing_tools/metal_site_finder.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/rna_predict_chem_map.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/rna/util/rna_predict_chem_map.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/homodimer_design.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/scenarios/beta_strand_homodimer_design/homodimer_design.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/mp_dock.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/membrane/mp_dock.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/revert_design_to_native.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/rosetta_scripts/revert_design_to_native.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/rna_graft.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/rna/util/rna_graft.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/extract_atomtree_diffs.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/ligand_docking/extract_atomtree_diffs.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/N-terminal_acetylation.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/post-translational_modification/N-terminal_acetylation.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/mp_mutate_relax.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/membrane/mp_mutate_relax.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/density_tools.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/electron_density/density_tools.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/peptoid_design.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/noncanonical_backbones/peptoid_design.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/score_jd2.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/analysis/score_jd2.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/mg_modeler.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/magnesium/mg_modeler.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/DARC.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/darc/DARC.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/theta_ligand.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/darc/theta_ligand.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/antibody_CR_paratope.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/antibody/antibody_CR_paratope.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/swa_protein_main.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/stepwise/legacy/swa_protein_main.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/constel.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/constel.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/rna_cluster.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/rna/util/rna_cluster.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/rna_database.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/rna/util/rna_database.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/homodimer_design.mpi.linuxgccrelease" as "bin/homodimer_design.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/mp_dock.mpi.linuxgccrelease" as "bin/mp_dock.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/rna_predict_chem_map.mpi.linuxgccrelease" as "bin/rna_predict_chem_map.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/performance_benchmark.mpi.linuxgccrelease" as "bin/performance_benchmark.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/metal_site_finder.mpi.linuxgccrelease" as "bin/metal_site_finder.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/UBQ_Gp_CYD-CYD.mpi.linuxgccrelease" as "bin/UBQ_Gp_CYD-CYD.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/dump_capped_residue.mpi.linuxgccrelease" as "bin/dump_capped_residue.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/backrub.mpi.linuxgccrelease" as "bin/backrub.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/analyze_base_pairing.mpi.linuxgccrelease" as "bin/analyze_base_pairing.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/calibur.mpi.linuxgccrelease" as "bin/calibur.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/simple_cycpep_predict.mpi.linuxgccrelease" as "bin/simple_cycpep_predict.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/gen_lig_grids.mpi.linuxgccrelease" as "bin/gen_lig_grids.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/fixbb.mpi.linuxgccrelease" as "bin/fixbb.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/swa_rna_util.mpi.linuxgccrelease" as "bin/swa_rna_util.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/helical_bundle_predict.mpi.linuxgccrelease" as "bin/helical_bundle_predict.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/tcrmodel.mpi.linuxgccrelease" as "bin/tcrmodel.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/relax.mpi.linuxgccrelease" as "bin/relax.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/helix_from_sequence.mpi.linuxgccrelease" as "bin/helix_from_sequence.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/MakeRotLib.mpi.linuxgccrelease" as "bin/MakeRotLib.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/generate_starting_zinc_sites.mpi.linuxgccrelease" as "bin/generate_starting_zinc_sites.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/mp_lipid_acc.mpi.linuxgccrelease" as "bin/mp_lipid_acc.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/antibody.mpi.linuxgccrelease" as "bin/antibody.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/spheregrinder.mpi.linuxgccrelease" as "bin/spheregrinder.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/ensemble_generator_score12_sidechain_ver2.mpi.linuxgccrelease" as "bin/ensemble_generator_score12_sidechain_ver2.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/cst_info.mpi.linuxgccrelease" as "bin/cst_info.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/drrafter_error_estimation.mpi.linuxgccrelease" as "bin/drrafter_error_estimation.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/match.mpi.linuxgccrelease" as "bin/match.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/FiberDiffractionFreeSet.mpi.linuxgccrelease" as "bin/FiberDiffractionFreeSet.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/UnfoldedStateEnergyCalculator.mpi.linuxgccrelease" as "bin/UnfoldedStateEnergyCalculator.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/glycosyltransfer.mpi.linuxgccrelease" as "bin/glycosyltransfer.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/pocket_relax.mpi.linuxgccrelease" as "bin/pocket_relax.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/dock_glycans.mpi.linuxgccrelease" as "bin/dock_glycans.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/FlexPepDocking.mpi.linuxgccrelease" as "bin/FlexPepDocking.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/antibody_H3.mpi.linuxgccrelease" as "bin/antibody_H3.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/ensemble_analysis.mpi.linuxgccrelease" as "bin/ensemble_analysis.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/mp_range_relax.mpi.linuxgccrelease" as "bin/mp_range_relax.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/zinc2_homodimer_design.mpi.linuxgccrelease" as "bin/zinc2_homodimer_design.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/docking_prepack_protocol.mpi.linuxgccrelease" as "bin/docking_prepack_protocol.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/fix_alignment_to_match_pdb.mpi.linuxgccrelease" as "bin/fix_alignment_to_match_pdb.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/multistage_rosetta_scripts.mpi.linuxgccrelease" as "bin/multistage_rosetta_scripts.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/ddg_monomer.mpi.linuxgccrelease" as "bin/ddg_monomer.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/full_length_model.mpi.linuxgccrelease" as "bin/full_length_model.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/UBQ_E2_thioester.mpi.linuxgccrelease" as "bin/UBQ_E2_thioester.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/zinc2_homodimer_setup.mpi.linuxgccrelease" as "bin/zinc2_homodimer_setup.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/rna_suitename.mpi.linuxgccrelease" as "bin/rna_suitename.mpi.linuxgccrelease" /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/design_contrast_and_statistic.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/benchmark/scientific/design_contrast_and_statistic.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/trRosetta.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/trRosetta/trRosetta.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/score_aln.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/comparative_modeling/score_aln.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/score_jd2.mpi.linuxgccrelease" as "bin/score_jd2.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/mp_mutate_relax.mpi.linuxgccrelease" as "bin/mp_mutate_relax.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/N-terminal_acetylation.mpi.linuxgccrelease" as "bin/N-terminal_acetylation.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/extract_atomtree_diffs.mpi.linuxgccrelease" as "bin/extract_atomtree_diffs.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/revert_design_to_native.mpi.linuxgccrelease" as "bin/revert_design_to_native.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/rna_graft.mpi.linuxgccrelease" as "bin/rna_graft.mpi.linuxgccrelease" /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/extract_pdbs.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/extract_pdbs.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/iterhybrid_selector.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/comparative_modeling/iterhybrid_selector.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/rna_motif.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/rna/util/rna_motif.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/erraser_minimizer.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/rna/erraser/erraser_minimizer.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/mutate.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/mutate.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/remodel.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/remodel.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/ResidueDisorder.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/analysis/ResidueDisorder.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/loopmodel.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/loop_modeling/loopmodel.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/rna_design.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/rna/rna_design.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/batch_distances.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/analysis/batch_distances.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/mp_symdock.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/membrane/mp_symdock.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/struc_set_fragment_picker.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/struc_set_fragment_picker.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/doug_dock_design_min_mod2_cal_cal.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/scenarios/doug_dock_design_min_mod2_cal_cal.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/thermal_sampler.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/recces/legacy/thermal_sampler.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/mp_transform.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/membrane/mp_transform.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/make_exemplar.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/pocket/make_exemplar.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/make_ray_files.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/darc/make_ray_files.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/mp_domain_assembly.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/membrane/mp_domain_assembly.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/extract_motifs.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/motif_tools/extract_motifs.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/rna_features.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/rna/util/rna_features.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/AnchoredPDBCreator.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/interface_design/anchored_design/AnchoredPDBCreator.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/surface_docking.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/surface_docking/surface_docking.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/InterfaceAnalyzer.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/analysis/InterfaceAnalyzer.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/gen_apo_grids.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/match/gen_apo_grids.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/template_features.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/comparative_modeling/template_features.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/AnchorFinder.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/interface_design/anchored_design/AnchorFinder.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/hydrate.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/hydrate/hydrate.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/AbinitioRelax.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/AbinitioRelax.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/ddg_benchmark.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/benchmark/scientific/ddg_benchmark.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/membrane_abinitio2.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/membrane_abinitio/membrane_abinitio2.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/exposed_strand_finder.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/scenarios/beta_strand_homodimer_design/exposed_strand_finder.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/segment_file_generator.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/sewing/segment_file_generator.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/BuildPeptide.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/flexpep_docking/BuildPeptide.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/hbs_design.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/noncanonical_backbones/hbs_design.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/recces.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/recces/recces.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/parse_rosetta_script.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/rosetta_scripts/parse_rosetta_script.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/incorporate_motifs.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/motif_tools/incorporate_motifs.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/ligand_transform_with_pcs.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/nmr/ligand_transform_with_pcs.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/beta_peptide_modeling.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/design/beta_peptide_modeling.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/CstfileToTheozymePDB.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/enzdes/CstfileToTheozymePDB.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/cluster.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/clustering/cluster.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/sewing_hasher.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/legacy_sewing/sewing_hasher.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/oop_design.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/noncanonical_backbones/oop_design.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/sc.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/analysis/sc.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/rosettaDNA.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/rosettaDNA/rosettaDNA.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/ddg_benchmark.mpi.linuxgccrelease" as "bin/ddg_benchmark.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/hydrate.mpi.linuxgccrelease" as "bin/hydrate.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/template_features.mpi.linuxgccrelease" as "bin/template_features.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/AnchorFinder.mpi.linuxgccrelease" as "bin/AnchorFinder.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/gen_apo_grids.mpi.linuxgccrelease" as "bin/gen_apo_grids.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/InterfaceAnalyzer.mpi.linuxgccrelease" as "bin/InterfaceAnalyzer.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/AnchoredPDBCreator.mpi.linuxgccrelease" as "bin/AnchoredPDBCreator.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/rna_features.mpi.linuxgccrelease" as "bin/rna_features.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/surface_docking.mpi.linuxgccrelease" as "bin/surface_docking.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/mp_domain_assembly.mpi.linuxgccrelease" as "bin/mp_domain_assembly.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/extract_motifs.mpi.linuxgccrelease" as "bin/extract_motifs.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/make_exemplar.mpi.linuxgccrelease" as "bin/make_exemplar.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/make_ray_files.mpi.linuxgccrelease" as "bin/make_ray_files.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/mp_transform.mpi.linuxgccrelease" as "bin/mp_transform.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/thermal_sampler.mpi.linuxgccrelease" as "bin/thermal_sampler.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/doug_dock_design_min_mod2_cal_cal.mpi.linuxgccrelease" as "bin/doug_dock_design_min_mod2_cal_cal.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/mp_symdock.mpi.linuxgccrelease" as "bin/mp_symdock.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/struc_set_fragment_picker.mpi.linuxgccrelease" as "bin/struc_set_fragment_picker.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/loopmodel.mpi.linuxgccrelease" as "bin/loopmodel.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/batch_distances.mpi.linuxgccrelease" as "bin/batch_distances.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/rna_design.mpi.linuxgccrelease" as "bin/rna_design.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/ResidueDisorder.mpi.linuxgccrelease" as "bin/ResidueDisorder.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/mutate.mpi.linuxgccrelease" as "bin/mutate.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/remodel.mpi.linuxgccrelease" as "bin/remodel.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/erraser_minimizer.mpi.linuxgccrelease" as "bin/erraser_minimizer.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/iterhybrid_selector.mpi.linuxgccrelease" as "bin/iterhybrid_selector.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/rna_motif.mpi.linuxgccrelease" as "bin/rna_motif.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/extract_pdbs.mpi.linuxgccrelease" as "bin/extract_pdbs.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/score_aln.mpi.linuxgccrelease" as "bin/score_aln.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/trRosetta.mpi.linuxgccrelease" as "bin/trRosetta.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/design_contrast_and_statistic.mpi.linuxgccrelease" as "bin/design_contrast_and_statistic.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/rna_database.mpi.linuxgccrelease" as "bin/rna_database.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/rna_cluster.mpi.linuxgccrelease" as "bin/rna_cluster.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/constel.mpi.linuxgccrelease" as "bin/constel.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/antibody_CR_paratope.mpi.linuxgccrelease" as "bin/antibody_CR_paratope.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/swa_protein_main.mpi.linuxgccrelease" as "bin/swa_protein_main.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/DARC.mpi.linuxgccrelease" as "bin/DARC.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/theta_ligand.mpi.linuxgccrelease" as "bin/theta_ligand.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/mg_modeler.mpi.linuxgccrelease" as "bin/mg_modeler.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/peptoid_design.mpi.linuxgccrelease" as "bin/peptoid_design.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/density_tools.mpi.linuxgccrelease" as "bin/density_tools.mpi.linuxgccrelease" /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/generate_database_cache.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/internal/generate_database_cache.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/fit_helix_in_map.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/DRRAFTER/fit_helix_in_map.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/packstat.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/packstat.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/rotamer_recovery.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/benchmark/scientific/rotamer_recovery.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/mp_viewer.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/membrane/mp_viewer.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/count_cycpep_sequences.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/cyclic_peptide/count_cycpep_sequences.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/parse_rosetta_script.mpi.linuxgccrelease" as "bin/parse_rosetta_script.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/recces.mpi.linuxgccrelease" as "bin/recces.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/BuildPeptide.mpi.linuxgccrelease" as "bin/BuildPeptide.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/hbs_design.mpi.linuxgccrelease" as "bin/hbs_design.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/exposed_strand_finder.mpi.linuxgccrelease" as "bin/exposed_strand_finder.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/segment_file_generator.mpi.linuxgccrelease" as "bin/segment_file_generator.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/membrane_abinitio2.mpi.linuxgccrelease" as "bin/membrane_abinitio2.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/AbinitioRelax.mpi.linuxgccrelease" as "bin/AbinitioRelax.mpi.linuxgccrelease" /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/vip.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/vip.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/score.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/analysis/score.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/identify_cdr_clusters.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/antibody/identify_cdr_clusters.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/r_noe_assign.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/nmr/r_noe_assign.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/PeptideDeriver.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/analysis/PeptideDeriver.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/super_aln.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/comparative_modeling/super_aln.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/create_clash-based_repack_shell.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/design/create_clash-based_repack_shell.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/zinc_heterodimer_design.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/design/zinc_heterodimer_design.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/rna_minimize.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/rna/util/rna_minimize.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/validate_rosetta_script.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/rosetta_scripts/validate_rosetta_script.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/rna_score.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/rna/util/rna_score.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/denovo_density.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/electron_density/denovo_density.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/antibody_numbering_converter.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/antibody/antibody_numbering_converter.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/per_residue_solvent_exposure.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/analysis/per_residue_solvent_exposure.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/avrg_silent.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/comparative_modeling/avrg_silent.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/edge_file_generator.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/sewing/edge_file_generator.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/rna_thread.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/rna/thread/rna_thread.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/mpi_msd.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/design/mpi_msd.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/docking_protocol.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/docking/docking_protocol.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/rna_extract.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/rna/util/rna_extract.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/cs_rosetta_rna.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/rna/util/cs_rosetta_rna.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/rnp_ddg.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/rnp_ddg/rnp_ddg.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/pocket_suggest_target_residues_by_ddg.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/pocket/pocket_suggest_target_residues_by_ddg.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/minimize_ppi.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/minimize_ppi.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/combine_silent.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/combine_silent.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/pepspec.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/pepspec/pepspec.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/fast_clustering.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/analysis/fast_clustering.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/rna_helix.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/rna/util/rna_helix.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/make_motif_tables.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/motif_dock/make_motif_tables.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/residue_energy_breakdown.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/analysis/residue_energy_breakdown.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/glycan_clash_check.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/carbohydrates/glycan_clash_check.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/ligand_rpkmin.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/ligand_docking/ligand_rpkmin.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/resample_full_model.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/stepwise/resample_full_model.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/backside_hbond_finder.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/sewing/ligand_sewing_tools/backside_hbond_finder.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/antibody_legacy.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/antibody/antibody_legacy.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/coupled_moves.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/coupled_moves/coupled_moves.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/UBQ_Gp_LYX-Cterm.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/scenarios/chemically_conjugated_docking/UBQ_Gp_LYX-Cterm.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/optE_parallel.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/weight_optimization/optE_parallel.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/rna_denovo.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/rna/rna_denovo.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/phosphorylation.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/post-translational_modification/phosphorylation.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/ca_to_allatom.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/scenarios/ca_to_allatom.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/minimize_ppi.mpi.linuxgccrelease" as "bin/minimize_ppi.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/rnp_ddg.mpi.linuxgccrelease" as "bin/rnp_ddg.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/combine_silent.mpi.linuxgccrelease" as "bin/combine_silent.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/mpi_msd.mpi.linuxgccrelease" as "bin/mpi_msd.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/docking_protocol.mpi.linuxgccrelease" as "bin/docking_protocol.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/rna_extract.mpi.linuxgccrelease" as "bin/rna_extract.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/rna_thread.mpi.linuxgccrelease" as "bin/rna_thread.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/edge_file_generator.mpi.linuxgccrelease" as "bin/edge_file_generator.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/avrg_silent.mpi.linuxgccrelease" as "bin/avrg_silent.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/per_residue_solvent_exposure.mpi.linuxgccrelease" as "bin/per_residue_solvent_exposure.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/antibody_numbering_converter.mpi.linuxgccrelease" as "bin/antibody_numbering_converter.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/denovo_density.mpi.linuxgccrelease" as "bin/denovo_density.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/rna_score.mpi.linuxgccrelease" as "bin/rna_score.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/rna_minimize.mpi.linuxgccrelease" as "bin/rna_minimize.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/validate_rosetta_script.mpi.linuxgccrelease" as "bin/validate_rosetta_script.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/zinc_heterodimer_design.mpi.linuxgccrelease" as "bin/zinc_heterodimer_design.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/super_aln.mpi.linuxgccrelease" as "bin/super_aln.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/create_clash-based_repack_shell.mpi.linuxgccrelease" as "bin/create_clash-based_repack_shell.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/identify_cdr_clusters.mpi.linuxgccrelease" as "bin/identify_cdr_clusters.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/r_noe_assign.mpi.linuxgccrelease" as "bin/r_noe_assign.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/PeptideDeriver.mpi.linuxgccrelease" as "bin/PeptideDeriver.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/score.mpi.linuxgccrelease" as "bin/score.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/vip.mpi.linuxgccrelease" as "bin/vip.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/count_cycpep_sequences.mpi.linuxgccrelease" as "bin/count_cycpep_sequences.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/mp_viewer.mpi.linuxgccrelease" as "bin/mp_viewer.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/packstat.mpi.linuxgccrelease" as "bin/packstat.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/rotamer_recovery.mpi.linuxgccrelease" as "bin/rotamer_recovery.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/fit_helix_in_map.mpi.linuxgccrelease" as "bin/fit_helix_in_map.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/generate_database_cache.mpi.linuxgccrelease" as "bin/generate_database_cache.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/sc.mpi.linuxgccrelease" as "bin/sc.mpi.linuxgccrelease" run_generate_command(["bin/generate_database_cache.mpi.linuxgccrelease"], ["build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/generate_database_cache.mpi.linuxgccrelease"]) Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/rosettaDNA.mpi.linuxgccrelease" as "bin/rosettaDNA.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/oop_design.mpi.linuxgccrelease" as "bin/oop_design.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/cluster.mpi.linuxgccrelease" as "bin/cluster.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/sewing_hasher.mpi.linuxgccrelease" as "bin/sewing_hasher.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/CstfileToTheozymePDB.mpi.linuxgccrelease" as "bin/CstfileToTheozymePDB.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/beta_peptide_modeling.mpi.linuxgccrelease" as "bin/beta_peptide_modeling.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/incorporate_motifs.mpi.linuxgccrelease" as "bin/incorporate_motifs.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/ligand_transform_with_pcs.mpi.linuxgccrelease" as "bin/ligand_transform_with_pcs.mpi.linuxgccrelease" /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/swa_rna_main.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/stepwise/legacy/swa_rna_main.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/sequence_recovery.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/design/sequence_recovery.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/mp_dock_setup.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/membrane/mp_dock_setup.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/fragment_picker.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/fragment_picker.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/AnchoredDesign.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/interface_design/anchored_design/AnchoredDesign.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/nucleobase_sample_around.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/rna/util/nucleobase_sample_around.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit /apps/compiler/gcc/8.3.0/mvapich2/2.3.1/bin/mpicxx -o build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/recon.mpi.linuxgccrelease -Wl,--disable-new-dtags -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=/scratch/a1376a01/rosetta/main/source/build/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/apps/public/recon_design/recon.o -Lexternal/lib -Lbuild/src/release/linux/3.10/64/x86/gcc/8.3/mpi -Lsrc -Lbuild/external/release/linux/3.10/64/x86/gcc/8.3/mpi -Lexternal -L/apps/compiler/gcc/8.3.0/mvapich2/2.3.1/lib -L/apps/compiler/gcc/8.3.0/lib64 -L/apps/compiler/gcc/8.3.0/lib/gcc/x86_64-unknown-linux-gnu/8.3.0 -L/opt/cray/lib64 -L/usr/lib64 -L/apps/applications/PYTHON/2.7/lib -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.8 -lprotocols.7 -lprotocols_e.6 -lprotocols_d.6 -lprotocols_c.6 -lprotocols_b.6 -lprotocols_a.6 -lprotocols_h.5 -lprotocols_g.5 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.6 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lzlib -lcppdb -lsqlite3 -lcifparse -lxml2 -lzmq -lrdkit Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/fragment_picker.mpi.linuxgccrelease" as "bin/fragment_picker.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/ca_to_allatom.mpi.linuxgccrelease" as "bin/ca_to_allatom.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/mp_dock_setup.mpi.linuxgccrelease" as "bin/mp_dock_setup.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/optE_parallel.mpi.linuxgccrelease" as "bin/optE_parallel.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/backside_hbond_finder.mpi.linuxgccrelease" as "bin/backside_hbond_finder.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/ligand_rpkmin.mpi.linuxgccrelease" as "bin/ligand_rpkmin.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/residue_energy_breakdown.mpi.linuxgccrelease" as "bin/residue_energy_breakdown.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/phosphorylation.mpi.linuxgccrelease" as "bin/phosphorylation.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/rna_denovo.mpi.linuxgccrelease" as "bin/rna_denovo.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/coupled_moves.mpi.linuxgccrelease" as "bin/coupled_moves.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/glycan_clash_check.mpi.linuxgccrelease" as "bin/glycan_clash_check.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/UBQ_Gp_LYX-Cterm.mpi.linuxgccrelease" as "bin/UBQ_Gp_LYX-Cterm.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/sequence_recovery.mpi.linuxgccrelease" as "bin/sequence_recovery.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/swa_rna_main.mpi.linuxgccrelease" as "bin/swa_rna_main.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/antibody_legacy.mpi.linuxgccrelease" as "bin/antibody_legacy.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/resample_full_model.mpi.linuxgccrelease" as "bin/resample_full_model.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/make_motif_tables.mpi.linuxgccrelease" as "bin/make_motif_tables.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/rna_helix.mpi.linuxgccrelease" as "bin/rna_helix.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/pepspec.mpi.linuxgccrelease" as "bin/pepspec.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/pocket_suggest_target_residues_by_ddg.mpi.linuxgccrelease" as "bin/pocket_suggest_target_residues_by_ddg.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/fast_clustering.mpi.linuxgccrelease" as "bin/fast_clustering.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/cs_rosetta_rna.mpi.linuxgccrelease" as "bin/cs_rosetta_rna.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/AnchoredDesign.mpi.linuxgccrelease" as "bin/AnchoredDesign.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/recon.mpi.linuxgccrelease" as "bin/recon.mpi.linuxgccrelease" Install file: "build/src/release/linux/3.10/64/x86/gcc/8.3/mpi/nucleobase_sample_around.mpi.linuxgccrelease" as "bin/nucleobase_sample_around.mpi.linuxgccrelease" apps.public.generate_database_cache: (0) Generated default Dunbrack binary cache: /scratch/a1376a01/rosetta/main/database/rotamer/shapovalov/StpDwn_0-0-0/Dunbrack10.lib.bin apps.public.generate_database_cache: (0) Generated Dunbrack binary cache for -beta: /scratch/a1376a01/rosetta/main/database/rotamer/beta_nov2016/Dunbrack10.lib.bin apps.public.generate_database_cache: (0) Generated Dunbrack binary cache for -restore_talaris_behavior: /scratch/a1376a01/rosetta/main/database/rotamer/ExtendedOpt1-5/Dunbrack10.lib.bin apps.public.generate_database_cache: (0) Generated Dunbrack binary cache for -restore_pre_talaris_2013_behavior: /scratch/a1376a01/rosetta/main/database/rotamer/bbdep02.May.sortlib.Dunbrack02.lib.bin apps.public.generate_database_cache: (0) Generated Dunbrack binary cache for -restore_pre_talaris_2013_behavior -correct: /scratch/a1376a01/rosetta/main/database/rotamer/bbdep02.May.sortlib-correct.12.2010.Dunbrack02.lib.bin scons: done building targets.