-in:file:s min_cst_0.5.dep2RossRenum_0001.pdb
-ddg::mut_file dep2_input_mutfile
-database /software/rosetta/3.9/main/database                
-ddg:weight_file soft_rep_design                                              
-ddg:minimization_scorefunction score12
-ddg::minimization_patch /software/rosetta/3.9/main/database/scoring/weights/score12.wts_patch                   
-fa_max_dis 9.0                                                               
-ddg::iterations 50                                                          
-ddg::dump_pdbs true                                                        
-ignore_unrecognized_res                                                     
-ddg::local_opt_only false                                                    
-ddg::min_cst true                                                           
-constraints::cst_file input.cst                 
-ddg::suppress_checkpointing true                                            
-in::file::fullatom                                                          
-ddg::mean false                                                             
-ddg::min true                                                               
-ddg::sc_min_only false                                                     
-ddg::ramp_repulsive true                                                 
-mute all                                                                     
-unmute core.optimization.LineMinimizer 
-ddg::output_silent true
-ddg::out ddg_predictions.out