inux -Iexternal/boost_1_55_0 -Iexternal/dbio -I/usr/include -I/usr/local/include src/apps/public/nmr/r_noe_assign.cc
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/r_noe_assign.default.linuxgccrelease -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/src/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/external/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/nmr/r_noe_assign.o -Lexternal/lib -Lbuild/src/release/linux/3.13/64/x86/gcc/4.8/default -Lsrc -Lbuild/external/release/linux/3.13/64/x86/gcc/4.8/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.7 -lprotocols.6 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols_h.4 -lprotocols_g.4 -lprotocols_f.4 -lprotocols_e.4 -lprotocols_d.4 -lprotocols_c.4 -lprotocols_b.4 -lprotocols_a.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3
Install file: "build/src/release/linux/3.13/64/x86/gcc/4.8/default/r_noe_assign.default.linuxgccrelease" as "bin/r_noe_assign.default.linuxgccrelease"
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/relax.o -c -std=c++98 -isystem external/boost_1_55_0/ -isystem external/include/ -isystem external/dbio/ -pipe -ffor-scope -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/4.8 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_55_0 -Iexternal/dbio -I/usr/include -I/usr/local/include src/apps/public/relax.cc
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/relax.default.linuxgccrelease -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/src/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/external/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/relax.o -Lexternal/lib -Lbuild/src/release/linux/3.13/64/x86/gcc/4.8/default -Lsrc -Lbuild/external/release/linux/3.13/64/x86/gcc/4.8/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.7 -lprotocols.6 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols_h.4 -lprotocols_g.4 -lprotocols_f.4 -lprotocols_e.4 -lprotocols_d.4 -lprotocols_c.4 -lprotocols_b.4 -lprotocols_a.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3
Install file: "build/src/release/linux/3.13/64/x86/gcc/4.8/default/relax.default.linuxgccrelease" as "bin/relax.default.linuxgccrelease"
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/remodel.o -c -std=c++98 -isystem external/boost_1_55_0/ -isystem external/include/ -isystem external/dbio/ -pipe -ffor-scope -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/4.8 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_55_0 -Iexternal/dbio -I/usr/include -I/usr/local/include src/apps/public/remodel.cc
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/remodel.default.linuxgccrelease -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/src/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/external/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/remodel.o -Lexternal/lib -Lbuild/src/release/linux/3.13/64/x86/gcc/4.8/default -Lsrc -Lbuild/external/release/linux/3.13/64/x86/gcc/4.8/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.7 -lprotocols.6 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols_h.4 -lprotocols_g.4 -lprotocols_f.4 -lprotocols_e.4 -lprotocols_d.4 -lprotocols_c.4 -lprotocols_b.4 -lprotocols_a.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3
Install file: "build/src/release/linux/3.13/64/x86/gcc/4.8/default/remodel.default.linuxgccrelease" as "bin/remodel.default.linuxgccrelease"
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/analysis/residue_energy_breakdown.o -c -std=c++98 -isystem external/boost_1_55_0/ -isystem external/include/ -isystem external/dbio/ -pipe -ffor-scope -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/4.8 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_55_0 -Iexternal/dbio -I/usr/include -I/usr/local/include src/apps/public/analysis/residue_energy_breakdown.cc
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/residue_energy_breakdown.default.linuxgccrelease -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/src/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/external/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/analysis/residue_energy_breakdown.o -Lexternal/lib -Lbuild/src/release/linux/3.13/64/x86/gcc/4.8/default -Lsrc -Lbuild/external/release/linux/3.13/64/x86/gcc/4.8/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.7 -lprotocols.6 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols_h.4 -lprotocols_g.4 -lprotocols_f.4 -lprotocols_e.4 -lprotocols_d.4 -lprotocols_c.4 -lprotocols_b.4 -lprotocols_a.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3
Install file: "build/src/release/linux/3.13/64/x86/gcc/4.8/default/residue_energy_breakdown.default.linuxgccrelease" as "bin/residue_energy_breakdown.default.linuxgccrelease"
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/rosetta_scripts/revert_design_to_native.o -c -std=c++98 -isystem external/boost_1_55_0/ -isystem external/include/ -isystem external/dbio/ -pipe -ffor-scope -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/4.8 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_55_0 -Iexternal/dbio -I/usr/include -I/usr/local/include src/apps/public/rosetta_scripts/revert_design_to_native.cc
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/revert_design_to_native.default.linuxgccrelease -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/src/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/external/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/rosetta_scripts/revert_design_to_native.o -Lexternal/lib -Lbuild/src/release/linux/3.13/64/x86/gcc/4.8/default -Lsrc -Lbuild/external/release/linux/3.13/64/x86/gcc/4.8/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.7 -lprotocols.6 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols_h.4 -lprotocols_g.4 -lprotocols_f.4 -lprotocols_e.4 -lprotocols_d.4 -lprotocols_c.4 -lprotocols_b.4 -lprotocols_a.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3
Install file: "build/src/release/linux/3.13/64/x86/gcc/4.8/default/revert_design_to_native.default.linuxgccrelease" as "bin/revert_design_to_native.default.linuxgccrelease"
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/farna/rna_cluster.o -c -std=c++98 -isystem external/boost_1_55_0/ -isystem external/include/ -isystem external/dbio/ -pipe -ffor-scope -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/4.8 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_55_0 -Iexternal/dbio -I/usr/include -I/usr/local/include src/apps/public/farna/rna_cluster.cc
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/rna_cluster.default.linuxgccrelease -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/src/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/external/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/farna/rna_cluster.o -Lexternal/lib -Lbuild/src/release/linux/3.13/64/x86/gcc/4.8/default -Lsrc -Lbuild/external/release/linux/3.13/64/x86/gcc/4.8/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.7 -lprotocols.6 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols_h.4 -lprotocols_g.4 -lprotocols_f.4 -lprotocols_e.4 -lprotocols_d.4 -lprotocols_c.4 -lprotocols_b.4 -lprotocols_a.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3
Install file: "build/src/release/linux/3.13/64/x86/gcc/4.8/default/rna_cluster.default.linuxgccrelease" as "bin/rna_cluster.default.linuxgccrelease"
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/farna/rna_database.o -c -std=c++98 -isystem external/boost_1_55_0/ -isystem external/include/ -isystem external/dbio/ -pipe -ffor-scope -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/4.8 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_55_0 -Iexternal/dbio -I/usr/include -I/usr/local/include src/apps/public/farna/rna_database.cc
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/rna_database.default.linuxgccrelease -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/src/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/external/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/farna/rna_database.o -Lexternal/lib -Lbuild/src/release/linux/3.13/64/x86/gcc/4.8/default -Lsrc -Lbuild/external/release/linux/3.13/64/x86/gcc/4.8/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.7 -lprotocols.6 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols_h.4 -lprotocols_g.4 -lprotocols_f.4 -lprotocols_e.4 -lprotocols_d.4 -lprotocols_c.4 -lprotocols_b.4 -lprotocols_a.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3
Install file: "build/src/release/linux/3.13/64/x86/gcc/4.8/default/rna_database.default.linuxgccrelease" as "bin/rna_database.default.linuxgccrelease"
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/farna/rna_denovo.o -c -std=c++98 -isystem external/boost_1_55_0/ -isystem external/include/ -isystem external/dbio/ -pipe -ffor-scope -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/4.8 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_55_0 -Iexternal/dbio -I/usr/include -I/usr/local/include src/apps/public/farna/rna_denovo.cc
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/rna_denovo.default.linuxgccrelease -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/src/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/external/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/farna/rna_denovo.o -Lexternal/lib -Lbuild/src/release/linux/3.13/64/x86/gcc/4.8/default -Lsrc -Lbuild/external/release/linux/3.13/64/x86/gcc/4.8/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.7 -lprotocols.6 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols_h.4 -lprotocols_g.4 -lprotocols_f.4 -lprotocols_e.4 -lprotocols_d.4 -lprotocols_c.4 -lprotocols_b.4 -lprotocols_a.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3
Install file: "build/src/release/linux/3.13/64/x86/gcc/4.8/default/rna_denovo.default.linuxgccrelease" as "bin/rna_denovo.default.linuxgccrelease"
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/design/rna_design.o -c -std=c++98 -isystem external/boost_1_55_0/ -isystem external/include/ -isystem external/dbio/ -pipe -ffor-scope -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/4.8 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_55_0 -Iexternal/dbio -I/usr/include -I/usr/local/include src/apps/public/design/rna_design.cc
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/rna_design.default.linuxgccrelease -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/src/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/external/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/design/rna_design.o -Lexternal/lib -Lbuild/src/release/linux/3.13/64/x86/gcc/4.8/default -Lsrc -Lbuild/external/release/linux/3.13/64/x86/gcc/4.8/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.7 -lprotocols.6 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols_h.4 -lprotocols_g.4 -lprotocols_f.4 -lprotocols_e.4 -lprotocols_d.4 -lprotocols_c.4 -lprotocols_b.4 -lprotocols_a.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3
Install file: "build/src/release/linux/3.13/64/x86/gcc/4.8/default/rna_design.default.linuxgccrelease" as "bin/rna_design.default.linuxgccrelease"
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/farna/rna_extract.o -c -std=c++98 -isystem external/boost_1_55_0/ -isystem external/include/ -isystem external/dbio/ -pipe -ffor-scope -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/4.8 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_55_0 -Iexternal/dbio -I/usr/include -I/usr/local/include src/apps/public/farna/rna_extract.cc
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/rna_extract.default.linuxgccrelease -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/src/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/external/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/farna/rna_extract.o -Lexternal/lib -Lbuild/src/release/linux/3.13/64/x86/gcc/4.8/default -Lsrc -Lbuild/external/release/linux/3.13/64/x86/gcc/4.8/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.7 -lprotocols.6 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols_h.4 -lprotocols_g.4 -lprotocols_f.4 -lprotocols_e.4 -lprotocols_d.4 -lprotocols_c.4 -lprotocols_b.4 -lprotocols_a.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3
Install file: "build/src/release/linux/3.13/64/x86/gcc/4.8/default/rna_extract.default.linuxgccrelease" as "bin/rna_extract.default.linuxgccrelease"
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/rna_util/rna_features.o -c -std=c++98 -isystem external/boost_1_55_0/ -isystem external/include/ -isystem external/dbio/ -pipe -ffor-scope -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/4.8 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_55_0 -Iexternal/dbio -I/usr/include -I/usr/local/include src/apps/public/rna_util/rna_features.cc
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/rna_features.default.linuxgccrelease -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/src/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/external/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/rna_util/rna_features.o -Lexternal/lib -Lbuild/src/release/linux/3.13/64/x86/gcc/4.8/default -Lsrc -Lbuild/external/release/linux/3.13/64/x86/gcc/4.8/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.7 -lprotocols.6 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols_h.4 -lprotocols_g.4 -lprotocols_f.4 -lprotocols_e.4 -lprotocols_d.4 -lprotocols_c.4 -lprotocols_b.4 -lprotocols_a.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3
Install file: "build/src/release/linux/3.13/64/x86/gcc/4.8/default/rna_features.default.linuxgccrelease" as "bin/rna_features.default.linuxgccrelease"
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/rna_util/rna_graft.o -c -std=c++98 -isystem external/boost_1_55_0/ -isystem external/include/ -isystem external/dbio/ -pipe -ffor-scope -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/4.8 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_55_0 -Iexternal/dbio -I/usr/include -I/usr/local/include src/apps/public/rna_util/rna_graft.cc
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/rna_graft.default.linuxgccrelease -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/src/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/external/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/rna_util/rna_graft.o -Lexternal/lib -Lbuild/src/release/linux/3.13/64/x86/gcc/4.8/default -Lsrc -Lbuild/external/release/linux/3.13/64/x86/gcc/4.8/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.7 -lprotocols.6 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols_h.4 -lprotocols_g.4 -lprotocols_f.4 -lprotocols_e.4 -lprotocols_d.4 -lprotocols_c.4 -lprotocols_b.4 -lprotocols_a.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3
Install file: "build/src/release/linux/3.13/64/x86/gcc/4.8/default/rna_graft.default.linuxgccrelease" as "bin/rna_graft.default.linuxgccrelease"
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/rna_util/rna_helix.o -c -std=c++98 -isystem external/boost_1_55_0/ -isystem external/include/ -isystem external/dbio/ -pipe -ffor-scope -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/4.8 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_55_0 -Iexternal/dbio -I/usr/include -I/usr/local/include src/apps/public/rna_util/rna_helix.cc
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/rna_helix.default.linuxgccrelease -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/src/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/external/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/rna_util/rna_helix.o -Lexternal/lib -Lbuild/src/release/linux/3.13/64/x86/gcc/4.8/default -Lsrc -Lbuild/external/release/linux/3.13/64/x86/gcc/4.8/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.7 -lprotocols.6 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols_h.4 -lprotocols_g.4 -lprotocols_f.4 -lprotocols_e.4 -lprotocols_d.4 -lprotocols_c.4 -lprotocols_b.4 -lprotocols_a.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3
Install file: "build/src/release/linux/3.13/64/x86/gcc/4.8/default/rna_helix.default.linuxgccrelease" as "bin/rna_helix.default.linuxgccrelease"
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/farna/rna_minimize.o -c -std=c++98 -isystem external/boost_1_55_0/ -isystem external/include/ -isystem external/dbio/ -pipe -ffor-scope -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/4.8 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_55_0 -Iexternal/dbio -I/usr/include -I/usr/local/include src/apps/public/farna/rna_minimize.cc
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/rna_minimize.default.linuxgccrelease -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/src/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/external/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/farna/rna_minimize.o -Lexternal/lib -Lbuild/src/release/linux/3.13/64/x86/gcc/4.8/default -Lsrc -Lbuild/external/release/linux/3.13/64/x86/gcc/4.8/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.7 -lprotocols.6 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols_h.4 -lprotocols_g.4 -lprotocols_f.4 -lprotocols_e.4 -lprotocols_d.4 -lprotocols_c.4 -lprotocols_b.4 -lprotocols_a.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3
Install file: "build/src/release/linux/3.13/64/x86/gcc/4.8/default/rna_minimize.default.linuxgccrelease" as "bin/rna_minimize.default.linuxgccrelease"
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/rna_util/rna_predict_chem_map.o -c -std=c++98 -isystem external/boost_1_55_0/ -isystem external/include/ -isystem external/dbio/ -pipe -ffor-scope -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/4.8 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_55_0 -Iexternal/dbio -I/usr/include -I/usr/local/include src/apps/public/rna_util/rna_predict_chem_map.cc
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/rna_predict_chem_map.default.linuxgccrelease -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/src/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/external/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/rna_util/rna_predict_chem_map.o -Lexternal/lib -Lbuild/src/release/linux/3.13/64/x86/gcc/4.8/default -Lsrc -Lbuild/external/release/linux/3.13/64/x86/gcc/4.8/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.7 -lprotocols.6 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols_h.4 -lprotocols_g.4 -lprotocols_f.4 -lprotocols_e.4 -lprotocols_d.4 -lprotocols_c.4 -lprotocols_b.4 -lprotocols_a.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3
Install file: "build/src/release/linux/3.13/64/x86/gcc/4.8/default/rna_predict_chem_map.default.linuxgccrelease" as "bin/rna_predict_chem_map.default.linuxgccrelease"
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/farna/rna_score.o -c -std=c++98 -isystem external/boost_1_55_0/ -isystem external/include/ -isystem external/dbio/ -pipe -ffor-scope -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/4.8 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_55_0 -Iexternal/dbio -I/usr/include -I/usr/local/include src/apps/public/farna/rna_score.cc
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/rna_score.default.linuxgccrelease -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/src/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/external/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/farna/rna_score.o -Lexternal/lib -Lbuild/src/release/linux/3.13/64/x86/gcc/4.8/default -Lsrc -Lbuild/external/release/linux/3.13/64/x86/gcc/4.8/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.7 -lprotocols.6 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols_h.4 -lprotocols_g.4 -lprotocols_f.4 -lprotocols_e.4 -lprotocols_d.4 -lprotocols_c.4 -lprotocols_b.4 -lprotocols_a.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3
Install file: "build/src/release/linux/3.13/64/x86/gcc/4.8/default/rna_score.default.linuxgccrelease" as "bin/rna_score.default.linuxgccrelease"
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/rna_util/rna_suitename.o -c -std=c++98 -isystem external/boost_1_55_0/ -isystem external/include/ -isystem external/dbio/ -pipe -ffor-scope -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/4.8 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_55_0 -Iexternal/dbio -I/usr/include -I/usr/local/include src/apps/public/rna_util/rna_suitename.cc
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/rna_suitename.default.linuxgccrelease -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/src/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/external/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/rna_util/rna_suitename.o -Lexternal/lib -Lbuild/src/release/linux/3.13/64/x86/gcc/4.8/default -Lsrc -Lbuild/external/release/linux/3.13/64/x86/gcc/4.8/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.7 -lprotocols.6 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols_h.4 -lprotocols_g.4 -lprotocols_f.4 -lprotocols_e.4 -lprotocols_d.4 -lprotocols_c.4 -lprotocols_b.4 -lprotocols_a.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3
Install file: "build/src/release/linux/3.13/64/x86/gcc/4.8/default/rna_suitename.default.linuxgccrelease" as "bin/rna_suitename.default.linuxgccrelease"
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/rna_util/rna_thread.o -c -std=c++98 -isystem external/boost_1_55_0/ -isystem external/include/ -isystem external/dbio/ -pipe -ffor-scope -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/4.8 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_55_0 -Iexternal/dbio -I/usr/include -I/usr/local/include src/apps/public/rna_util/rna_thread.cc
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/rna_thread.default.linuxgccrelease -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/src/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/external/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/rna_util/rna_thread.o -Lexternal/lib -Lbuild/src/release/linux/3.13/64/x86/gcc/4.8/default -Lsrc -Lbuild/external/release/linux/3.13/64/x86/gcc/4.8/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.7 -lprotocols.6 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols_h.4 -lprotocols_g.4 -lprotocols_f.4 -lprotocols_e.4 -lprotocols_d.4 -lprotocols_c.4 -lprotocols_b.4 -lprotocols_a.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3
Install file: "build/src/release/linux/3.13/64/x86/gcc/4.8/default/rna_thread.default.linuxgccrelease" as "bin/rna_thread.default.linuxgccrelease"
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/rosettaDNA/rosettaDNA.o -c -std=c++98 -isystem external/boost_1_55_0/ -isystem external/include/ -isystem external/dbio/ -pipe -ffor-scope -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/4.8 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_55_0 -Iexternal/dbio -I/usr/include -I/usr/local/include src/apps/public/rosettaDNA/rosettaDNA.cc
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/rosettaDNA.default.linuxgccrelease -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/src/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/external/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/rosettaDNA/rosettaDNA.o -Lexternal/lib -Lbuild/src/release/linux/3.13/64/x86/gcc/4.8/default -Lsrc -Lbuild/external/release/linux/3.13/64/x86/gcc/4.8/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.7 -lprotocols.6 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols_h.4 -lprotocols_g.4 -lprotocols_f.4 -lprotocols_e.4 -lprotocols_d.4 -lprotocols_c.4 -lprotocols_b.4 -lprotocols_a.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3
Install file: "build/src/release/linux/3.13/64/x86/gcc/4.8/default/rosettaDNA.default.linuxgccrelease" as "bin/rosettaDNA.default.linuxgccrelease"
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/rosetta_scripts/rosetta_scripts.o -c -std=c++98 -isystem external/boost_1_55_0/ -isystem external/include/ -isystem external/dbio/ -pipe -ffor-scope -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/4.8 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_55_0 -Iexternal/dbio -I/usr/include -I/usr/local/include src/apps/public/rosetta_scripts/rosetta_scripts.cc
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/rosetta_scripts.default.linuxgccrelease -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/src/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/external/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/rosetta_scripts/rosetta_scripts.o -Lexternal/lib -Lbuild/src/release/linux/3.13/64/x86/gcc/4.8/default -Lsrc -Lbuild/external/release/linux/3.13/64/x86/gcc/4.8/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.7 -lprotocols.6 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols_h.4 -lprotocols_g.4 -lprotocols_f.4 -lprotocols_e.4 -lprotocols_d.4 -lprotocols_c.4 -lprotocols_b.4 -lprotocols_a.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3
Install file: "build/src/release/linux/3.13/64/x86/gcc/4.8/default/rosetta_scripts.default.linuxgccrelease" as "bin/rosetta_scripts.default.linuxgccrelease"
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/benchmark/scientific/rotamer_recovery.o -c -std=c++98 -isystem external/boost_1_55_0/ -isystem external/include/ -isystem external/dbio/ -pipe -ffor-scope -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/4.8 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_55_0 -Iexternal/dbio -I/usr/include -I/usr/local/include src/apps/benchmark/scientific/rotamer_recovery.cc
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/rotamer_recovery.default.linuxgccrelease -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/src/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/external/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/benchmark/scientific/rotamer_recovery.o -Lexternal/lib -Lbuild/src/release/linux/3.13/64/x86/gcc/4.8/default -Lsrc -Lbuild/external/release/linux/3.13/64/x86/gcc/4.8/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.7 -lprotocols.6 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols_h.4 -lprotocols_g.4 -lprotocols_f.4 -lprotocols_e.4 -lprotocols_d.4 -lprotocols_c.4 -lprotocols_b.4 -lprotocols_a.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3
Install file: "build/src/release/linux/3.13/64/x86/gcc/4.8/default/rotamer_recovery.default.linuxgccrelease" as "bin/rotamer_recovery.default.linuxgccrelease"
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/analysis/score.o -c -std=c++98 -isystem external/boost_1_55_0/ -isystem external/include/ -isystem external/dbio/ -pipe -ffor-scope -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/4.8 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_55_0 -Iexternal/dbio -I/usr/include -I/usr/local/include src/apps/public/analysis/score.cc
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/score.default.linuxgccrelease -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/src/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/external/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/analysis/score.o -Lexternal/lib -Lbuild/src/release/linux/3.13/64/x86/gcc/4.8/default -Lsrc -Lbuild/external/release/linux/3.13/64/x86/gcc/4.8/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.7 -lprotocols.6 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols_h.4 -lprotocols_g.4 -lprotocols_f.4 -lprotocols_e.4 -lprotocols_d.4 -lprotocols_c.4 -lprotocols_b.4 -lprotocols_a.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3
Install file: "build/src/release/linux/3.13/64/x86/gcc/4.8/default/score.default.linuxgccrelease" as "bin/score.default.linuxgccrelease"
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/comparative_modeling/score_aln.o -c -std=c++98 -isystem external/boost_1_55_0/ -isystem external/include/ -isystem external/dbio/ -pipe -ffor-scope -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/4.8 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_55_0 -Iexternal/dbio -I/usr/include -I/usr/local/include src/apps/public/comparative_modeling/score_aln.cc
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/score_aln.default.linuxgccrelease -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/src/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/external/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/comparative_modeling/score_aln.o -Lexternal/lib -Lbuild/src/release/linux/3.13/64/x86/gcc/4.8/default -Lsrc -Lbuild/external/release/linux/3.13/64/x86/gcc/4.8/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.7 -lprotocols.6 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols_h.4 -lprotocols_g.4 -lprotocols_f.4 -lprotocols_e.4 -lprotocols_d.4 -lprotocols_c.4 -lprotocols_b.4 -lprotocols_a.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3
Install file: "build/src/release/linux/3.13/64/x86/gcc/4.8/default/score_aln.default.linuxgccrelease" as "bin/score_aln.default.linuxgccrelease"
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/comparative_modeling/score_aln2.o -c -std=c++98 -isystem external/boost_1_55_0/ -isystem external/include/ -isystem external/dbio/ -pipe -ffor-scope -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/4.8 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_55_0 -Iexternal/dbio -I/usr/include -I/usr/local/include src/apps/public/comparative_modeling/score_aln2.cc
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/score_aln2.default.linuxgccrelease -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/src/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/external/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/comparative_modeling/score_aln2.o -Lexternal/lib -Lbuild/src/release/linux/3.13/64/x86/gcc/4.8/default -Lsrc -Lbuild/external/release/linux/3.13/64/x86/gcc/4.8/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.7 -lprotocols.6 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols_h.4 -lprotocols_g.4 -lprotocols_f.4 -lprotocols_e.4 -lprotocols_d.4 -lprotocols_c.4 -lprotocols_b.4 -lprotocols_a.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3
Install file: "build/src/release/linux/3.13/64/x86/gcc/4.8/default/score_aln2.default.linuxgccrelease" as "bin/score_aln2.default.linuxgccrelease"
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/analysis/score_jd2.o -c -std=c++98 -isystem external/boost_1_55_0/ -isystem external/include/ -isystem external/dbio/ -pipe -ffor-scope -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/4.8 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_55_0 -Iexternal/dbio -I/usr/include -I/usr/local/include src/apps/public/analysis/score_jd2.cc
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/score_jd2.default.linuxgccrelease -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/src/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/external/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/analysis/score_jd2.o -Lexternal/lib -Lbuild/src/release/linux/3.13/64/x86/gcc/4.8/default -Lsrc -Lbuild/external/release/linux/3.13/64/x86/gcc/4.8/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.7 -lprotocols.6 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols_h.4 -lprotocols_g.4 -lprotocols_f.4 -lprotocols_e.4 -lprotocols_d.4 -lprotocols_c.4 -lprotocols_b.4 -lprotocols_a.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3
Install file: "build/src/release/linux/3.13/64/x86/gcc/4.8/default/score_jd2.default.linuxgccrelease" as "bin/score_jd2.default.linuxgccrelease"
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/ligand_docking/select_best_unique_ligand_poses.o -c -std=c++98 -isystem external/boost_1_55_0/ -isystem external/include/ -isystem external/dbio/ -pipe -ffor-scope -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/4.8 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_55_0 -Iexternal/dbio -I/usr/include -I/usr/local/include src/apps/public/ligand_docking/select_best_unique_ligand_poses.cc
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/select_best_unique_ligand_poses.default.linuxgccrelease -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/src/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/external/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/ligand_docking/select_best_unique_ligand_poses.o -Lexternal/lib -Lbuild/src/release/linux/3.13/64/x86/gcc/4.8/default -Lsrc -Lbuild/external/release/linux/3.13/64/x86/gcc/4.8/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.7 -lprotocols.6 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols_h.4 -lprotocols_g.4 -lprotocols_f.4 -lprotocols_e.4 -lprotocols_d.4 -lprotocols_c.4 -lprotocols_b.4 -lprotocols_a.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3
Install file: "build/src/release/linux/3.13/64/x86/gcc/4.8/default/select_best_unique_ligand_poses.default.linuxgccrelease" as "bin/select_best_unique_ligand_poses.default.linuxgccrelease"
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/design/sequence_recovery.o -c -std=c++98 -isystem external/boost_1_55_0/ -isystem external/include/ -isystem external/dbio/ -pipe -ffor-scope -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/4.8 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_55_0 -Iexternal/dbio -I/usr/include -I/usr/local/include src/apps/public/design/sequence_recovery.cc
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/sequence_recovery.default.linuxgccrelease -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/src/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/external/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/design/sequence_recovery.o -Lexternal/lib -Lbuild/src/release/linux/3.13/64/x86/gcc/4.8/default -Lsrc -Lbuild/external/release/linux/3.13/64/x86/gcc/4.8/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.7 -lprotocols.6 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols_h.4 -lprotocols_g.4 -lprotocols_f.4 -lprotocols_e.4 -lprotocols_d.4 -lprotocols_c.4 -lprotocols_b.4 -lprotocols_a.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3
Install file: "build/src/release/linux/3.13/64/x86/gcc/4.8/default/sequence_recovery.default.linuxgccrelease" as "bin/sequence_recovery.default.linuxgccrelease"
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/sequence_tolerance.o -c -std=c++98 -isystem external/boost_1_55_0/ -isystem external/include/ -isystem external/dbio/ -pipe -ffor-scope -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/4.8 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_55_0 -Iexternal/dbio -I/usr/include -I/usr/local/include src/apps/public/sequence_tolerance.cc
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/sequence_tolerance.default.linuxgccrelease -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/src/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/external/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/sequence_tolerance.o -Lexternal/lib -Lbuild/src/release/linux/3.13/64/x86/gcc/4.8/default -Lsrc -Lbuild/external/release/linux/3.13/64/x86/gcc/4.8/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.7 -lprotocols.6 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols_h.4 -lprotocols_g.4 -lprotocols_f.4 -lprotocols_e.4 -lprotocols_d.4 -lprotocols_c.4 -lprotocols_b.4 -lprotocols_a.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3
Install file: "build/src/release/linux/3.13/64/x86/gcc/4.8/default/sequence_tolerance.default.linuxgccrelease" as "bin/sequence_tolerance.default.linuxgccrelease"
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/stepwise/stepwise.o -c -std=c++98 -isystem external/boost_1_55_0/ -isystem external/include/ -isystem external/dbio/ -pipe -ffor-scope -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/4.8 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_55_0 -Iexternal/dbio -I/usr/include -I/usr/local/include src/apps/public/stepwise/stepwise.cc
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/stepwise.default.linuxgccrelease -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/src/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/external/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/stepwise/stepwise.o -Lexternal/lib -Lbuild/src/release/linux/3.13/64/x86/gcc/4.8/default -Lsrc -Lbuild/external/release/linux/3.13/64/x86/gcc/4.8/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.7 -lprotocols.6 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols_h.4 -lprotocols_g.4 -lprotocols_f.4 -lprotocols_e.4 -lprotocols_d.4 -lprotocols_c.4 -lprotocols_b.4 -lprotocols_a.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3
Install file: "build/src/release/linux/3.13/64/x86/gcc/4.8/default/stepwise.default.linuxgccrelease" as "bin/stepwise.default.linuxgccrelease"
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/comparative_modeling/super_aln.o -c -std=c++98 -isystem external/boost_1_55_0/ -isystem external/include/ -isystem external/dbio/ -pipe -ffor-scope -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/4.8 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_55_0 -Iexternal/dbio -I/usr/include -I/usr/local/include src/apps/public/comparative_modeling/super_aln.cc
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/super_aln.default.linuxgccrelease -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/src/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/external/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/comparative_modeling/super_aln.o -Lexternal/lib -Lbuild/src/release/linux/3.13/64/x86/gcc/4.8/default -Lsrc -Lbuild/external/release/linux/3.13/64/x86/gcc/4.8/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.7 -lprotocols.6 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols_h.4 -lprotocols_g.4 -lprotocols_f.4 -lprotocols_e.4 -lprotocols_d.4 -lprotocols_c.4 -lprotocols_b.4 -lprotocols_a.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3
Install file: "build/src/release/linux/3.13/64/x86/gcc/4.8/default/super_aln.default.linuxgccrelease" as "bin/super_aln.default.linuxgccrelease"
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/design/supercharge.o -c -std=c++98 -isystem external/boost_1_55_0/ -isystem external/include/ -isystem external/dbio/ -pipe -ffor-scope -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/4.8 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_55_0 -Iexternal/dbio -I/usr/include -I/usr/local/include src/apps/public/design/supercharge.cc
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/supercharge.default.linuxgccrelease -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/src/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/external/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/design/supercharge.o -Lexternal/lib -Lbuild/src/release/linux/3.13/64/x86/gcc/4.8/default -Lsrc -Lbuild/external/release/linux/3.13/64/x86/gcc/4.8/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.7 -lprotocols.6 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols_h.4 -lprotocols_g.4 -lprotocols_f.4 -lprotocols_e.4 -lprotocols_d.4 -lprotocols_c.4 -lprotocols_b.4 -lprotocols_a.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3
Install file: "build/src/release/linux/3.13/64/x86/gcc/4.8/default/supercharge.default.linuxgccrelease" as "bin/supercharge.default.linuxgccrelease"
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/surface_docking/surface_docking.o -c -std=c++98 -isystem external/boost_1_55_0/ -isystem external/include/ -isystem external/dbio/ -pipe -ffor-scope -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/4.8 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_55_0 -Iexternal/dbio -I/usr/include -I/usr/local/include src/apps/public/surface_docking/surface_docking.cc
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/surface_docking.default.linuxgccrelease -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/src/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/external/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/surface_docking/surface_docking.o -Lexternal/lib -Lbuild/src/release/linux/3.13/64/x86/gcc/4.8/default -Lsrc -Lbuild/external/release/linux/3.13/64/x86/gcc/4.8/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.7 -lprotocols.6 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols_h.4 -lprotocols_g.4 -lprotocols_f.4 -lprotocols_e.4 -lprotocols_d.4 -lprotocols_c.4 -lprotocols_b.4 -lprotocols_a.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3
Install file: "build/src/release/linux/3.13/64/x86/gcc/4.8/default/surface_docking.default.linuxgccrelease" as "bin/surface_docking.default.linuxgccrelease"
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/stepwise/legacy/swa_protein_main.o -c -std=c++98 -isystem external/boost_1_55_0/ -isystem external/include/ -isystem external/dbio/ -pipe -ffor-scope -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/4.8 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_55_0 -Iexternal/dbio -I/usr/include -I/usr/local/include src/apps/public/stepwise/legacy/swa_protein_main.cc
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/swa_protein_main.default.linuxgccrelease -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/src/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/external/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/stepwise/legacy/swa_protein_main.o -Lexternal/lib -Lbuild/src/release/linux/3.13/64/x86/gcc/4.8/default -Lsrc -Lbuild/external/release/linux/3.13/64/x86/gcc/4.8/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.7 -lprotocols.6 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols_h.4 -lprotocols_g.4 -lprotocols_f.4 -lprotocols_e.4 -lprotocols_d.4 -lprotocols_c.4 -lprotocols_b.4 -lprotocols_a.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3
Install file: "build/src/release/linux/3.13/64/x86/gcc/4.8/default/swa_protein_main.default.linuxgccrelease" as "bin/swa_protein_main.default.linuxgccrelease"
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/stepwise/legacy/swa_rna_main.o -c -std=c++98 -isystem external/boost_1_55_0/ -isystem external/include/ -isystem external/dbio/ -pipe -ffor-scope -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/4.8 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_55_0 -Iexternal/dbio -I/usr/include -I/usr/local/include src/apps/public/stepwise/legacy/swa_rna_main.cc
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/swa_rna_main.default.linuxgccrelease -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/src/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=/home/lanselibai/Cheng/rosetta_2014.30.57114_bundle/main/source/build/external/release/linux/3.13/64/x86/gcc/4.8/default -Wl,-rpath=\$ORIGIN -Wl,-rpath=\$ORIGIN/../lib build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/stepwise/legacy/swa_rna_main.o -Lexternal/lib -Lbuild/src/release/linux/3.13/64/x86/gcc/4.8/default -Lsrc -Lbuild/external/release/linux/3.13/64/x86/gcc/4.8/default -Lexternal -L/usr/lib -L/usr/local/lib -ldevel -lprotocols.7 -lprotocols.6 -lprotocols_f.5 -lprotocols_e.5 -lprotocols_d.5 -lprotocols_c.5 -lprotocols_b.5 -lprotocols_a.5 -lprotocols_h.4 -lprotocols_g.4 -lprotocols_f.4 -lprotocols_e.4 -lprotocols_d.4 -lprotocols_c.4 -lprotocols_b.4 -lprotocols_a.4 -lprotocols.3 -lprotocols_b.2 -lprotocols_a.2 -lprotocols.1 -lcore.5 -lcore.4 -lcore.3 -lcore.2 -lcore.1 -lbasic -lnumeric -lutility -lObjexxFCL -lz -lcppdb -lsqlite3
Install file: "build/src/release/linux/3.13/64/x86/gcc/4.8/default/swa_rna_main.default.linuxgccrelease" as "bin/swa_rna_main.default.linuxgccrelease"
g++ -o build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/stepwise/legacy/swa_rna_util.o -c -std=c++98 -isystem external/boost_1_55_0/ -isystem external/include/ -isystem external/dbio/ -pipe -ffor-scope -Wall -Wextra -pedantic -Wno-long-long -Wno-strict-aliasing -O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -s -Wno-unused-variable -Wno-unused-parameter -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DNDEBUG -Isrc -Iexternal/include -Isrc/platform/linux/64/gcc/4.8 -Isrc/platform/linux/64/gcc -Isrc/platform/linux/64 -Isrc/platform/linux -Iexternal/boost_1_55_0 -Iexternal/dbio -I/usr/include -I/usr/local/include src/apps/public/stepwise/legacy/swa_rna_util.cc
virtual memory exhausted: Cannot allocate memory
scons: *** [build/src/release/linux/3.13/64/x86/gcc/4.8/default/apps/public/stepwise/legacy/swa_rna_util.o] Error 1
scons: building terminated because of errors.