protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (3) Trial number: 20 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 1384 rotamers at 50 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 1756768 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 1384 rotamers at 50 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 1755680 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (3) Packer task: initialize from command line() core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 3.8147e-06 Deriv= -1.84793 Finite Diff= 0.23788 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 1384 rotamers at 50 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 1751900 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (3) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 7.27596e-14 Deriv= -207474 Finite Diff= 16158.6 core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 2.44853e-08 Deriv= -97088.6 Finite Diff= -101.267 core.optimization.Minimizer: (3) Line search failed even after resetting Hessian; aborting at iter#24 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (3) Trial number: 21 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 1007 rotamers at 40 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 1143228 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 1007 rotamers at 40 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 1143228 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (3) Packer task: initialize from command line() core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 1007 rotamers at 40 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 1143228 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (3) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 1.19209e-09 Deriv= -52.9396 Finite Diff= 0.124931 core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 9.76068e-07 Deriv= -61.097 Finite Diff= -0.930617 core.optimization.Minimizer: (3) Line search failed even after resetting Hessian; aborting at iter#25 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (3) Trial number: 22 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 776 rotamers at 28 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 791668 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 776 rotamers at 28 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 791668 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (3) Packer task: initialize from command line() core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 776 rotamers at 28 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 791668 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (3) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 3.05176e-07 Deriv= -22.1798 Finite Diff= -0.712416 core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 9.37243e-07 Deriv= -66.2637 Finite Diff= 0.425228 core.optimization.Minimizer: (3) Line search failed even after resetting Hessian; aborting at iter#9 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (3) Trial number: 23 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 863 rotamers at 32 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 962484 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 863 rotamers at 32 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 962484 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (3) Packer task: initialize from command line() core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 863 rotamers at 32 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 962484 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (3) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 3.05176e-07 Deriv= -26.8423 Finite Diff= -2.28688 core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 1.27837e-06 Deriv= -35.6178 Finite Diff= -3.47519 core.optimization.Minimizer: (3) Line search failed even after resetting Hessian; aborting at iter#7 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (3) Trial number: 24 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 807 rotamers at 33 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 801364 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 807 rotamers at 33 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 801364 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (3) Packer task: initialize from command line() core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 807 rotamers at 33 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 801364 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (3) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 4.76837e-09 Deriv= -58.4421 Finite Diff= 2.19145 core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 1.65751e-06 Deriv= -21.187 Finite Diff= -1.00918 core.optimization.Minimizer: (3) Line search failed even after resetting Hessian; aborting at iter#12 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (3) Trial number: 25 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 769 rotamers at 30 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 739396 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 769 rotamers at 30 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 739396 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (3) Packer task: initialize from command line() core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 3.8147e-06 Deriv= -0.172226 Finite Diff= 0.215219 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 769 rotamers at 30 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 739396 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (3) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 3.05176e-07 Deriv= -100.878 Finite Diff= 6.91347 core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 2.94564e-07 Deriv= -670.842 Finite Diff= 5.11491 core.optimization.Minimizer: (3) Line search failed even after resetting Hessian; aborting at iter#6 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (3) Trial number: 26 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 341 rotamers at 22 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 148420 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 341 rotamers at 22 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 148420 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (3) Packer task: initialize from command line() core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 341 rotamers at 22 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 148420 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (3) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 3.8147e-08 Deriv= -29.6912 Finite Diff= -0.823188 core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 1.40015e-06 Deriv= -29.6912 Finite Diff= -0.800592 core.optimization.Minimizer: (3) Line search failed even after resetting Hessian; aborting at iter#1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (3) Trial number: 27 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 751 rotamers at 30 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 726896 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 751 rotamers at 30 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 726896 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (3) Packer task: initialize from command line() core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 751 rotamers at 30 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 726896 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (3) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 3.8147e-08 Deriv= -37.5561 Finite Diff= -1.85755 core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 1.24494e-06 Deriv= -37.5561 Finite Diff= -1.86222 core.optimization.Minimizer: (3) Line search failed even after resetting Hessian; aborting at iter#1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (3) Trial number: 28 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 772 rotamers at 28 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 785628 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 772 rotamers at 28 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 785628 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (3) Packer task: initialize from command line() core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 772 rotamers at 28 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 785628 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (3) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 3.05176e-07 Deriv= -87.5697 Finite Diff= -0.148437 core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 2.72484e-07 Deriv= -783.968 Finite Diff= -2.22206 core.optimization.Minimizer: (3) Line search failed even after resetting Hessian; aborting at iter#12 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (3) Trial number: 29 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 865 rotamers at 35 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 919972 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 865 rotamers at 35 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 919972 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (3) Packer task: initialize from command line() core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 865 rotamers at 35 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 919972 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (3) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 3.72529e-11 Deriv= -56.7463 Finite Diff= 7.63245 core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 7.25396e-07 Deriv= -110.619 Finite Diff= 0.333341 core.optimization.Minimizer: (3) Line search failed even after resetting Hessian; aborting at iter#42 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (3) Trial number: 30 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 996 rotamers at 39 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 1133232 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 996 rotamers at 39 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 1133232 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (3) Packer task: initialize from command line() core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 1.90735e-06 Deriv= -0.529231 Finite Diff= 0.125064 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 996 rotamers at 39 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 1133232 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (3) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 1.90735e-08 Deriv= -61.4783 Finite Diff= 0.593871 core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 4.40138e-07 Deriv= -300.471 Finite Diff= -2.07205 core.optimization.Minimizer: (3) Line search failed even after resetting Hessian; aborting at iter#11 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (3) Trial number: 31 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 978 rotamers at 39 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 1083176 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 978 rotamers at 39 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 1083176 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (3) Packer task: initialize from command line() core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 978 rotamers at 39 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 1083176 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (3) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 7.62939e-08 Deriv= -1949.47 Finite Diff= 45.9028 core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 2.64113e-08 Deriv= -83444.9 Finite Diff= 1025.32 core.optimization.Minimizer: (3) Line search failed even after resetting Hessian; aborting at iter#6 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (3) Trial number: 32 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 839 rotamers at 34 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 864236 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 839 rotamers at 34 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 864236 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (3) Packer task: initialize from command line() core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 839 rotamers at 34 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 864236 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (3) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 3.8147e-08 Deriv= -116.795 Finite Diff= -9.01945 core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 7.05958e-07 Deriv= -116.795 Finite Diff= -9.00342 core.optimization.Minimizer: (3) Line search failed even after resetting Hessian; aborting at iter#1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (3) Trial number: 33 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 791 rotamers at 32 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 784288 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 791 rotamers at 32 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 784288 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (3) Packer task: initialize from command line() core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 3.8147e-06 Deriv= -0.543539 Finite Diff= 0.109689 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 791 rotamers at 32 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 784288 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (3) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 7.45058e-11 Deriv= -73.7365 Finite Diff= 2.26288 core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 4.42447e-07 Deriv= -297.343 Finite Diff= 4.35147 core.optimization.Minimizer: (3) Line search failed even after resetting Hessian; aborting at iter#58 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (3) Trial number: 34 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 876 rotamers at 34 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 944056 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 876 rotamers at 34 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 944056 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (3) Packer task: initialize from command line() core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 876 rotamers at 34 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 944056 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (3) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 1.52588e-07 Deriv= -1821.87 Finite Diff= -3.22614 core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 7.12105e-08 Deriv= -11478.7 Finite Diff= -131.58 core.optimization.Minimizer: (3) Line search failed even after resetting Hessian; aborting at iter#8 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (3) Trial number: 35 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 922 rotamers at 36 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 995316 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 922 rotamers at 36 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 995316 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (3) Packer task: initialize from command line() core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 1.90735e-06 Deriv= -0.668326 Finite Diff= 0.515285 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 922 rotamers at 36 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 995316 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (3) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 2.38419e-07 Deriv= -16.9373 Finite Diff= 0.283714 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (3) Trial number: 36 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 1097 rotamers at 39 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 1242424 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 1097 rotamers at 39 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 1239040 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (3) Packer task: initialize from command line() core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 1097 rotamers at 39 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 1239040 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (3) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 3.05176e-07 Deriv= -343.557 Finite Diff= 16.6762 core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 2.41728e-07 Deriv= -996.156 Finite Diff= -11.2284 core.optimization.Minimizer: (3) Line search failed even after resetting Hessian; aborting at iter#9 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (3) Trial number: 37 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 885 rotamers at 33 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 982140 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 885 rotamers at 33 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 982140 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (3) Packer task: initialize from command line() core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 3.8147e-06 Deriv= -0.089185 Finite Diff= 0.000511318 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 885 rotamers at 33 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 982140 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (3) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 1.81899e-12 Deriv= -320.785 Finite Diff= 56.25 core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 1.25511e-07 Deriv= -3694.99 Finite Diff= -0.211814 core.optimization.Minimizer: (3) Line search failed even after resetting Hessian; aborting at iter#39 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (3) Trial number: 38 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 443 rotamers at 24 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 239872 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 443 rotamers at 24 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 239872 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (3) Packer task: initialize from command line() core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 443 rotamers at 24 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 239872 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (3) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 3.8147e-08 Deriv= -3688.25 Finite Diff= 8.42296 core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 1.25626e-07 Deriv= -3688.25 Finite Diff= 8.42747 core.optimization.Minimizer: (3) Line search failed even after resetting Hessian; aborting at iter#1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (3) Trial number: 39 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 856 rotamers at 33 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 917500 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 856 rotamers at 33 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 917500 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (3) Packer task: initialize from command line() core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 3.8147e-06 Deriv= -0.271897 Finite Diff= 0.0344779 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 856 rotamers at 33 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 917500 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (3) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 3.8147e-08 Deriv= -3186.53 Finite Diff= -45.6569 core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 1.35155e-07 Deriv= -3186.53 Finite Diff= -45.6648 core.optimization.Minimizer: (3) Line search failed even after resetting Hessian; aborting at iter#1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (3) Trial number: 40 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 1170 rotamers at 47 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 1360920 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 1170 rotamers at 47 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 1359436 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (3) Packer task: initialize from command line() core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 4.76837e-07 Deriv= -58.4913 Finite Diff= 31.3361 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 1170 rotamers at 47 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 1358988 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (3) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (3) Trial number: 41 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 789 rotamers at 31 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 759156 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 789 rotamers at 31 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 759156 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (3) Packer task: initialize from command line() core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 789 rotamers at 31 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 759156 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (3) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 3.8147e-06 Deriv= -6.44086 Finite Diff= 0.23441 core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 1.48798e-06 Deriv= -26.2899 Finite Diff= -0.212661 core.optimization.Minimizer: (3) Line search failed even after resetting Hessian; aborting at iter#22 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (3) Trial number: 42 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 863 rotamers at 32 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 882880 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 863 rotamers at 32 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 882880 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (3) Packer task: initialize from command line() core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 3.8147e-06 Deriv= -0.0909537 Finite Diff= 0.044449 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 863 rotamers at 32 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 882880 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (3) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 7.62939e-08 Deriv= -17.6438 Finite Diff= -1.47575 core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 9.36316e-07 Deriv= -66.3949 Finite Diff= -0.569554 core.optimization.Minimizer: (3) Line search failed even after resetting Hessian; aborting at iter#10 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (3) Trial number: 43 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 1055 rotamers at 37 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 1061664 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 1055 rotamers at 37 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 1061172 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (3) Packer task: initialize from command line() core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 4.76837e-07 Deriv= -55.5232 Finite Diff= 0.890809 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 1055 rotamers at 37 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 1066200 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (3) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 1.16415e-12 Deriv= -397.432 Finite Diff= 227.148 core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 1.56762e-11 Deriv= -177.231 Finite Diff= 3.45931 core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 2.25217e-06 Deriv= -11.4757 Finite Diff= -0.997151 core.optimization.Minimizer: (3) Line search failed even after resetting Hessian; aborting at iter#75 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (3) Trial number: 44 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 727 rotamers at 28 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 713200 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 727 rotamers at 28 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 706220 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (3) Packer task: initialize from command line() core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 727 rotamers at 28 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 706220 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (3) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 7.45058e-11 Deriv= -18.4025 Finite Diff= 1.69373 core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 3.7018e-06 Deriv= -4.2477 Finite Diff= -0.141398 core.optimization.Minimizer: (3) Line search failed even after resetting Hessian; aborting at iter#26 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (3) Trial number: 45 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 1456 rotamers at 50 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 1846040 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 1456 rotamers at 50 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 1844208 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (3) Packer task: initialize from command line() core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 1456 rotamers at 50 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 1844392 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (3) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 9.53674e-09 Deriv= -11252.7 Finite Diff= 112.432 core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 1.46289e-08 Deriv= -271992 Finite Diff= -235.984 core.optimization.Minimizer: (3) Line search failed even after resetting Hessian; aborting at iter#13 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (3) Trial number: 46 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 701 rotamers at 25 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 562924 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 701 rotamers at 25 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 554968 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (3) Packer task: initialize from command line() core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 1.90735e-06 Deriv= -0.109426 Finite Diff= 0.0683264 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 701 rotamers at 25 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 554968 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (3) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 3.8147e-08 Deriv= -271493 Finite Diff= -11.5946 core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 1.46423e-08 Deriv= -271493 Finite Diff= -11.3881 core.optimization.Minimizer: (3) Line search failed even after resetting Hessian; aborting at iter#1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (3) Trial number: 47 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 361 rotamers at 14 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 179556 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 361 rotamers at 14 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 179556 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (3) Packer task: initialize from command line() core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 361 rotamers at 14 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 179556 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (3) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 3.8147e-08 Deriv= -271487 Finite Diff= -7.1008 core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 1.46425e-08 Deriv= -271487 Finite Diff= -7.00952 core.optimization.Minimizer: (3) Line search failed even after resetting Hessian; aborting at iter#1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (3) Trial number: 48 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 774 rotamers at 32 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 700720 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 774 rotamers at 32 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 700720 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (3) Packer task: initialize from command line() core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 3.8147e-06 Deriv= -0.289604 Finite Diff= 0.127693 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 774 rotamers at 32 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 700720 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (3) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 3.8147e-08 Deriv= -271569 Finite Diff= -75.8659 core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 1.46403e-08 Deriv= -271569 Finite Diff= -75.8348 core.optimization.Minimizer: (3) Line search failed even after resetting Hessian; aborting at iter#1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (3) Trial number: 49 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 846 rotamers at 36 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 812640 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 846 rotamers at 36 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 812640 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (3) Packer task: initialize from command line() core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 3.8147e-06 Deriv= -0.589731 Finite Diff= 0.176811 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 846 rotamers at 36 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 811168 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (3) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 3.8147e-08 Deriv= -273265 Finite Diff= -1772.93 core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 1.45948e-08 Deriv= -273265 Finite Diff= -1773.01 core.optimization.Minimizer: (3) Line search failed even after resetting Hessian; aborting at iter#1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (3) Trial number: 50 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 678 rotamers at 27 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 570120 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 678 rotamers at 27 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 570120 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (3) Packer task: initialize from command line() core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 678 rotamers at 27 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 570120 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (3) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 3.8147e-08 Deriv= -271626 Finite Diff= -120.197 core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 1.46388e-08 Deriv= -271626 Finite Diff= -120.492 core.optimization.Minimizer: (3) Line search failed even after resetting Hessian; aborting at iter#1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (3) Trial number: 51 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 599 rotamers at 25 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 440844 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 599 rotamers at 25 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 440844 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (3) Packer task: initialize from command line() core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 599 rotamers at 25 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 440844 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (3) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 3.8147e-08 Deriv= -271452 Finite Diff= -4.51193 core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 1.46435e-08 Deriv= -271452 Finite Diff= -4.49136 core.optimization.Minimizer: (3) Line search failed even after resetting Hessian; aborting at iter#1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (3) Trial number: 52 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 553 rotamers at 22 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 375132 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 553 rotamers at 22 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 375132 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (3) Packer task: initialize from command line() core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 553 rotamers at 22 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 375132 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (3) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 3.8147e-08 Deriv= -271448 Finite Diff= -2.29311 core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 1.46436e-08 Deriv= -271448 Finite Diff= -2.44758 core.optimization.Minimizer: (3) Line search failed even after resetting Hessian; aborting at iter#1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (3) Trial number: 53 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 674 rotamers at 25 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 544628 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 674 rotamers at 25 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 544628 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (3) Packer task: initialize from command line() core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 674 rotamers at 25 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 544628 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (3) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 3.8147e-08 Deriv= -271482 Finite Diff= -3.67573 core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 1.46426e-08 Deriv= -271482 Finite Diff= -3.38657 core.optimization.Minimizer: (3) Line search failed even after resetting Hessian; aborting at iter#1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.simple_moves.GenericMonteCarloMover: (3) Trial number: 54 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER RigidBodyPerturbNoCenter - perturb======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 820 rotamers at 31 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 767296 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER ParsedProtocol - minimize_interface======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 820 rotamers at 31 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 767296 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER TaskAwareMinMover - minimize_sc======================= core.pack.task: (3) Packer task: initialize from command line() core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER PackRotamersMover - repack======================= core.pack.task: (3) Packer task: initialize from command line() core.pack.pack_rotamers: (3) built 820 rotamers at 31 positions. core.pack.interaction_graph.interaction_graph_factory: (3) Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: (3) IG: 767296 bytes protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER AtomTree - set_up_foldtree======================= protocols.protein_interface_design.movers.SetAtomTree: (3) Applying fold_tree: FOLD_TREE EDGE 134 1 -1 EDGE 134 314 1 EDGE 314 301 -1 EDGE 313 299 2 EDGE 299 268 -1 EDGE 280 266 3 EDGE 266 243 -1 EDGE 314 344 -1 EDGE 332 346 4 EDGE 346 377 -1 EDGE 365 379 5 EDGE 379 396 -1 EDGE 134 152 -1 EDGE 145 153 6 EDGE 153 180 -1 EDGE 176 182 7 EDGE 182 221 -1 EDGE 216 223 8 EDGE 223 242 -1 EDGE 299 300 -1 EDGE 266 267 -1 EDGE 346 345 -1 EDGE 379 378 -1 EDGE 182 181 -1 EDGE 223 222 -1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN MOVER MinMover - minimize_flex======================= core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-1, 180-2, 180-3, 181-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-2, 180-3, 181-1, 181-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 180-3, 181-1, 181-2, 181-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-1, 221-2, 221-3, 222-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-2, 221-3, 222-1, 222-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 221-3, 222-1, 222-2, 222-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-1, 267-2, 267-3, 268-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-2, 267-3, 268-1, 268-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 267-3, 268-1, 268-2, 268-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-1, 300-2, 300-3, 301-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-2, 300-3, 301-1, 301-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 300-3, 301-1, 301-2, 301-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-1, 344-2, 344-3, 345-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-2, 344-3, 345-1, 345-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 344-3, 345-1, 345-2, 345-3! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-1, 377-2, 377-3, 378-1! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-2, 377-3, 378-1, 378-2! core.kinematics.AtomTree: (3) [ ERROR ] No proper DoF can be found for these four atoms: 377-3, 378-1, 378-2, 378-3! core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 3.8147e-08 Deriv= -271492 Finite Diff= -10.098 core.optimization.LineMinimizer: (3) [ ERROR ] Inaccurate G! step= 1.46424e-08 Deriv= -271492 Finite Diff= -10.3655 core.optimization.Minimizer: (3) Line search failed even after resetting Hessian; aborting at iter#1 protocols.rosetta_scripts.ParsedProtocol: (3) =======================BEGIN FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) =======================END FILTER ======================= protocols.rosetta_scripts.ParsedProtocol: (3) setting status to success protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============Begin report for ================== protocols.rosetta_scripts.ParsedProtocol.REPORT: (3) ============End report for ==================