core.init: Rosetta version exported from http://www.rosettacommons.org core.init: command: /Users/harleyworthy/rosetta_bin_mac_2016.02.58402_bundle/main/source/bin/docking_protocol.macosclangrelease -database /Users/harleyworthy/rosetta_bin_mac_2016.02.58402_bundle/main/database -partners [A_B] -randomize2 -dock_pert 3 8 -use_input_sc -s GFP-GFP_complex_0001.pdb -native ../GFP-GFP_complex.pdb -ex1 -ex2aro -nstruct 1000 core.init: 'RNG device' seed mode, using '/dev/urandom', seed=1476091427 seed_offset=0 real_seed=1476091427 core.init.random: RandomGenerator:init: Normal mode, seed=1476091427 RG_type=mt19937 core.chemical.ResidueTypeSet: Finished initializing fa_standard residue type set. Created 385 residue types core.chemical.ResidueTypeSet: Total time to initialize 0.45549 seconds. core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 64 in file ../GFP-GFP_complex.pdb. Best match rsd_type: CRO core.io.pdb.file_data: [ WARNING ] discarding 5 atoms at position 230 in file ../GFP-GFP_complex.pdb. Best match rsd_type: SER:NtermProteinFull core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 231 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 232 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 233 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLU core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 234 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 235 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 236 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PHE core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 238 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 241 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PRO core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 242 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ILE core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 243 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 245 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 246 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 247 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 248 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 249 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 251 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASN core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 252 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 253 in file ../GFP-GFP_complex.pdb. Best match rsd_type: HIS_D core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 254 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 255 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PHE core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 256 in file ../GFP-GFP_complex.pdb. Best match rsd_type: SER core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 258 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ARG core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 259 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 260 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 261 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 262 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 263 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 264 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 3 atoms at position 265 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ALA core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 267 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASN core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 268 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 269 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 270 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 272 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 273 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 274 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PHE core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 275 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ILE core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 276 in file ../GFP-GFP_complex.pdb. Best match rsd_type: CYS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 279 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 280 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 281 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 282 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PRO core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 284 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PRO core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 285 in file ../GFP-GFP_complex.pdb. Best match rsd_type: TRP core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 286 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PRO core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 288 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 292 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 3 atoms at position 293 in file ../GFP-GFP_complex.pdb. Best match rsd_type: CRO core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 295 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLN core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 296 in file ../GFP-GFP_complex.pdb. Best match rsd_type: CYS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 297 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PHE core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 298 in file ../GFP-GFP_complex.pdb. Best match rsd_type: SER core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 299 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ARG core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 300 in file ../GFP-GFP_complex.pdb. Best match rsd_type: TYR core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 301 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PRO core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 302 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 303 in file ../GFP-GFP_complex.pdb. Best match rsd_type: HIS core.io.pdb.file_data: [ WARNING ] discarding 7 atoms at position 304 in file ../GFP-GFP_complex.pdb. Best match rsd_type: MET core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 305 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 306 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ARG core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 307 in file ../GFP-GFP_complex.pdb. Best match rsd_type: HIS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 308 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 309 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PHE core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 310 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PHE core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 311 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 312 in file ../GFP-GFP_complex.pdb. Best match rsd_type: SER core.io.pdb.file_data: [ WARNING ] discarding 3 atoms at position 313 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ALA core.io.pdb.file_data: [ WARNING ] discarding 7 atoms at position 314 in file ../GFP-GFP_complex.pdb. Best match rsd_type: MET core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 315 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PRO core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 316 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 317 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 318 in file ../GFP-GFP_complex.pdb. Best match rsd_type: TYR core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 320 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLN core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 321 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLU core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 322 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ARG core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 324 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ILE core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 325 in file ../GFP-GFP_complex.pdb. Best match rsd_type: SER core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 326 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PHE core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 327 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 328 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 329 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 330 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 332 in file ../GFP-GFP_complex.pdb. Best match rsd_type: TYR core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 333 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 335 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ARG core.io.pdb.file_data: [ WARNING ] discarding 3 atoms at position 336 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ALA core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 337 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLU core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 339 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 340 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PHE core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 341 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 342 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 343 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 345 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 347 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASN core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 348 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ARG core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 349 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ILE core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 350 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 351 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 352 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 353 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 354 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ILE core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 355 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 356 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PHE core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 357 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 358 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 359 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 360 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 361 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASN core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 362 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ILE core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 363 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 364 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 365 in file ../GFP-GFP_complex.pdb. Best match rsd_type: HIS core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 366 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 367 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 368 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 369 in file ../GFP-GFP_complex.pdb. Best match rsd_type: TYR core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 370 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASN core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 371 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PHE core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 372 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASN core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 373 in file ../GFP-GFP_complex.pdb. Best match rsd_type: SER core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 374 in file ../GFP-GFP_complex.pdb. Best match rsd_type: HIS_D core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 375 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASN core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 377 in file ../GFP-GFP_complex.pdb. Best match rsd_type: TYR core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 378 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ILE core.io.pdb.file_data: [ WARNING ] discarding 3 atoms at position 380 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ALA core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 381 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 382 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 383 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLN core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 384 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 385 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASN core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 386 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 387 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ILE core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 388 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 3 atoms at position 389 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ALA core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 390 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASN core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 391 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PHE core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 392 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 393 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ILE core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 394 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ARG core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 395 in file ../GFP-GFP_complex.pdb. Best match rsd_type: HIS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 396 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASN core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 398 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 399 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 400 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 401 in file ../GFP-GFP_complex.pdb. Best match rsd_type: SER core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 403 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLN core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 404 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 3 atoms at position 405 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ALA core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 406 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 3 atoms at position 407 in file ../GFP-GFP_complex.pdb. Best match rsd_type: HIS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 408 in file ../GFP-GFP_complex.pdb. Best match rsd_type: TYR core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 409 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLN core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 410 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLN core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 411 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASN core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 413 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PRO core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 414 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ILE core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 415 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 416 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 417 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 418 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PRO core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 420 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 421 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 422 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PRO core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 423 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 424 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASN core.io.pdb.file_data: [ WARNING ] discarding 3 atoms at position 425 in file ../GFP-GFP_complex.pdb. Best match rsd_type: HIS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 426 in file ../GFP-GFP_complex.pdb. Best match rsd_type: TYR core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 427 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 428 in file ../GFP-GFP_complex.pdb. Best match rsd_type: SER core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 430 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLN core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 431 in file ../GFP-GFP_complex.pdb. Best match rsd_type: SER core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 433 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 434 in file ../GFP-GFP_complex.pdb. Best match rsd_type: SER core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 435 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 436 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 437 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PRO core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 438 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASN core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 439 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLU core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 440 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 441 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ARG core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 442 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 443 in file ../GFP-GFP_complex.pdb. Best match rsd_type: HIS_D core.io.pdb.file_data: [ WARNING ] discarding 7 atoms at position 444 in file ../GFP-GFP_complex.pdb. Best match rsd_type: MET core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 446 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 447 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 448 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 449 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PHE core.io.pdb.file_data: [ WARNING ] discarding 3 atoms at position 452 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ALA core.io.pdb.file_data: [ WARNING ] discarding 3 atoms at position 453 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ALA core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 454 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 455 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ILE core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 457 in file ../GFP-GFP_complex.pdb. Best match rsd_type: HIS core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 458 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY:CtermProteinFull core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue LYS 51 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD on residue LYS 51 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE on residue LYS 51 core.conformation.Conformation: [ WARNING ] missing heavyatom: NZ on residue LYS 51 core.conformation.Conformation: [ WARNING ] missing heavyatom: O on residue CRO 64 core.conformation.Conformation: [ WARNING ] missing heavyatom: N on residue CRO 64 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue LYS 153 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD on residue LYS 153 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE on residue LYS 153 core.conformation.Conformation: [ WARNING ] missing heavyatom: NZ on residue LYS 153 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue GLN 154 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD on residue GLN 154 core.conformation.Conformation: [ WARNING ] missing heavyatom: OE1 on residue GLN 154 core.conformation.Conformation: [ WARNING ] missing heavyatom: NE2 on residue GLN 154 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue LYS 155 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD on residue LYS 155 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE on residue LYS 155 core.conformation.Conformation: [ WARNING ] missing heavyatom: NZ on residue LYS 155 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue LYS 211 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD on residue LYS 211 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE on residue LYS 211 core.conformation.Conformation: [ WARNING ] missing heavyatom: NZ on residue LYS 211 core.conformation.Conformation: [ WARNING ] missing heavyatom: OXT on residue GLY:CtermProteinFull 229 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue ILE 242 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue ILE 275 core.conformation.Conformation: [ WARNING ] missing heavyatom: O on residue CRO 293 core.conformation.Conformation: [ WARNING ] missing heavyatom: N on residue CRO 293 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue ILE 324 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue ILE 349 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue ILE 354 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue ILE 362 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue ILE 378 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue ILE 387 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue ILE 393 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue ILE 414 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue ILE 455 core.conformation.Conformation: [ WARNING ] missing heavyatom: O on residue GLY:CtermProteinFull 458 core.conformation.Conformation: [ WARNING ] missing heavyatom: OXT on residue GLY:CtermProteinFull 458 core.io.pdb.file_data: [ WARNING ] can't find atom for res 64 atom N1 (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 64 atom O3 (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 242 atom CD (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 275 atom CD (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 293 atom N1 (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 293 atom O3 (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 324 atom CD (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 349 atom CD (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 354 atom CD (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 362 atom CD (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 378 atom CD (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 387 atom CD (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 393 atom CD (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 414 atom CD (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 455 atom CD (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 458 atom OC1 (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 458 atom OC2 (trying to set temp) core.pack.pack_missing_sidechains: packing residue number 51 because of missing atom number 6 atom name CG core.pack.pack_missing_sidechains: packing residue number 64 because of missing atom number 15 atom name O core.pack.pack_missing_sidechains: packing residue number 153 because of missing atom number 6 atom name CG core.pack.pack_missing_sidechains: packing residue number 154 because of missing atom number 6 atom name CG core.pack.pack_missing_sidechains: packing residue number 155 because of missing atom number 6 atom name CG core.pack.pack_missing_sidechains: packing residue number 211 because of missing atom number 6 atom name CG core.pack.pack_missing_sidechains: packing residue number 242 because of missing atom number 8 atom name CD1 core.pack.pack_missing_sidechains: packing residue number 275 because of missing atom number 8 atom name CD1 core.pack.pack_missing_sidechains: packing residue number 293 because of missing atom number 15 atom name O core.pack.pack_missing_sidechains: packing residue number 324 because of missing atom number 8 atom name CD1 core.pack.pack_missing_sidechains: packing residue number 349 because of missing atom number 8 atom name CD1 core.pack.pack_missing_sidechains: packing residue number 354 because of missing atom number 8 atom name CD1 core.pack.pack_missing_sidechains: packing residue number 362 because of missing atom number 8 atom name CD1 core.pack.pack_missing_sidechains: packing residue number 378 because of missing atom number 8 atom name CD1 core.pack.pack_missing_sidechains: packing residue number 387 because of missing atom number 8 atom name CD1 core.pack.pack_missing_sidechains: packing residue number 393 because of missing atom number 8 atom name CD1 core.pack.pack_missing_sidechains: packing residue number 414 because of missing atom number 8 atom name CD1 core.pack.pack_missing_sidechains: packing residue number 455 because of missing atom number 8 atom name CD1 core.pack.task: Packer task: initialize from command line() core.scoring.ScoreFunctionFactory: SCOREFUNCTION: talaris2013 core.scoring.etable: Starting energy table calculation core.scoring.etable: smooth_etable: changing atr/rep split to bottom of energy well core.scoring.etable: smooth_etable: spline smoothing lj etables (maxdis = 6) core.scoring.etable: smooth_etable: spline smoothing solvation etables (max_dis = 6) core.scoring.etable: Finished calculating energy tables. basic.io.database: Database file opened: scoring/score_functions/hbonds/sp2_elec_params/HBPoly1D.csv basic.io.database: Database file opened: scoring/score_functions/hbonds/sp2_elec_params/HBFadeIntervals.csv basic.io.database: Database file opened: scoring/score_functions/hbonds/sp2_elec_params/HBEval.csv basic.io.database: Database file opened: scoring/score_functions/rama/Rama_smooth_dyn.dat_ss_6.4 basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA_n basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA_pp core.pack.dunbrack.RotamerLibrary: Using Dunbrack library binary file '/Users/harleyworthy/rosetta_bin_mac_2016.02.58402_bundle/main/database/rotamer/ExtendedOpt1-5/Dunbrack10.lib.bin'. core.pack.dunbrack.RotamerLibrary: Dunbrack 2010 library took 0.568386 seconds to load from binary core.pack.rotamer_set.RotamerSet_: Using simple Rotamer generation logic for CRO core.pack.rotamer_set.RotamerSet_: Using simple Rotamer generation logic for CRO core.pack.pack_rotamers: built 164 rotamers at 18 positions. core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: IG: 17400 bytes basic.io.database: Database file opened: scoring/score_functions/InterchainPotential/interchain_env_log.txt basic.io.database: Database file opened: scoring/score_functions/InterchainPotential/interchain_pair_log.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/env_log.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cbeta_den.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/pair_log.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cenpack_log.txt basic.io.database: Database file opened: scoring/score_functions/PairEPotential/pdb_pair_stats_fine core.scoring.ScoreFunctionFactory: SCOREFUNCTION: talaris2013 protocols.docking.DockingInitialPerturbation: Reading options... protocols.jd2.PDBJobInputter: Instantiate PDBJobInputter protocols.jd2.PDBJobInputter: PDBJobInputter::fill_jobs protocols.jd2.PDBJobInputter: pushed GFP-GFP_complex_0001.pdb nstruct indices 1 - 1000 core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 64 in file ../GFP-GFP_complex.pdb. Best match rsd_type: CRO core.io.pdb.file_data: [ WARNING ] discarding 5 atoms at position 230 in file ../GFP-GFP_complex.pdb. Best match rsd_type: SER:NtermProteinFull core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 231 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 232 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 233 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLU core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 234 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 235 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 236 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PHE core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 238 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 241 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PRO core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 242 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ILE core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 243 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 245 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 246 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 247 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 248 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 249 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 251 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASN core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 252 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 253 in file ../GFP-GFP_complex.pdb. Best match rsd_type: HIS_D core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 254 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 255 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PHE core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 256 in file ../GFP-GFP_complex.pdb. Best match rsd_type: SER core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 258 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ARG core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 259 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 260 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 261 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 262 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 263 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 264 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 3 atoms at position 265 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ALA core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 267 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASN core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 268 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 269 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 270 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 272 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 273 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 274 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PHE core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 275 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ILE core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 276 in file ../GFP-GFP_complex.pdb. Best match rsd_type: CYS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 279 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 280 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 281 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 282 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PRO core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 284 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PRO core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 285 in file ../GFP-GFP_complex.pdb. Best match rsd_type: TRP core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 286 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PRO core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 288 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 292 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 3 atoms at position 293 in file ../GFP-GFP_complex.pdb. Best match rsd_type: CRO core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 295 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLN core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 296 in file ../GFP-GFP_complex.pdb. Best match rsd_type: CYS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 297 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PHE core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 298 in file ../GFP-GFP_complex.pdb. Best match rsd_type: SER core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 299 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ARG core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 300 in file ../GFP-GFP_complex.pdb. Best match rsd_type: TYR core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 301 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PRO core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 302 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 303 in file ../GFP-GFP_complex.pdb. Best match rsd_type: HIS core.io.pdb.file_data: [ WARNING ] discarding 7 atoms at position 304 in file ../GFP-GFP_complex.pdb. Best match rsd_type: MET core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 305 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 306 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ARG core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 307 in file ../GFP-GFP_complex.pdb. Best match rsd_type: HIS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 308 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 309 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PHE core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 310 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PHE core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 311 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 312 in file ../GFP-GFP_complex.pdb. Best match rsd_type: SER core.io.pdb.file_data: [ WARNING ] discarding 3 atoms at position 313 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ALA core.io.pdb.file_data: [ WARNING ] discarding 7 atoms at position 314 in file ../GFP-GFP_complex.pdb. Best match rsd_type: MET core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 315 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PRO core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 316 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 317 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 318 in file ../GFP-GFP_complex.pdb. Best match rsd_type: TYR core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 320 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLN core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 321 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLU core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 322 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ARG core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 324 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ILE core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 325 in file ../GFP-GFP_complex.pdb. Best match rsd_type: SER core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 326 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PHE core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 327 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 328 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 329 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 330 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 332 in file ../GFP-GFP_complex.pdb. Best match rsd_type: TYR core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 333 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 335 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ARG core.io.pdb.file_data: [ WARNING ] discarding 3 atoms at position 336 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ALA core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 337 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLU core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 339 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 340 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PHE core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 341 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 342 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 343 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 345 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 347 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASN core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 348 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ARG core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 349 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ILE core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 350 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 351 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 352 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 353 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 354 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ILE core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 355 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 356 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PHE core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 357 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 358 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 359 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 360 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 361 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASN core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 362 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ILE core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 363 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 364 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 365 in file ../GFP-GFP_complex.pdb. Best match rsd_type: HIS core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 366 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 367 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 368 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 369 in file ../GFP-GFP_complex.pdb. Best match rsd_type: TYR core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 370 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASN core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 371 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PHE core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 372 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASN core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 373 in file ../GFP-GFP_complex.pdb. Best match rsd_type: SER core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 374 in file ../GFP-GFP_complex.pdb. Best match rsd_type: HIS_D core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 375 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASN core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 377 in file ../GFP-GFP_complex.pdb. Best match rsd_type: TYR core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 378 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ILE core.io.pdb.file_data: [ WARNING ] discarding 3 atoms at position 380 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ALA core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 381 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 382 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 383 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLN core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 384 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 385 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASN core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 386 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 387 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ILE core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 388 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 3 atoms at position 389 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ALA core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 390 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASN core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 391 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PHE core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 392 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 393 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ILE core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 394 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ARG core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 395 in file ../GFP-GFP_complex.pdb. Best match rsd_type: HIS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 396 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASN core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 398 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 399 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 400 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 401 in file ../GFP-GFP_complex.pdb. Best match rsd_type: SER core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 403 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLN core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 404 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 3 atoms at position 405 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ALA core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 406 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 3 atoms at position 407 in file ../GFP-GFP_complex.pdb. Best match rsd_type: HIS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 408 in file ../GFP-GFP_complex.pdb. Best match rsd_type: TYR core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 409 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLN core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 410 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLN core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 411 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASN core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 413 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PRO core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 414 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ILE core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 415 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 416 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 417 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 418 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PRO core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 420 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 421 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 422 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PRO core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 423 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 424 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASN core.io.pdb.file_data: [ WARNING ] discarding 3 atoms at position 425 in file ../GFP-GFP_complex.pdb. Best match rsd_type: HIS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 426 in file ../GFP-GFP_complex.pdb. Best match rsd_type: TYR core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 427 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 428 in file ../GFP-GFP_complex.pdb. Best match rsd_type: SER core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 430 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLN core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 431 in file ../GFP-GFP_complex.pdb. Best match rsd_type: SER core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 433 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 434 in file ../GFP-GFP_complex.pdb. Best match rsd_type: SER core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 435 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 436 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 437 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PRO core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 438 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASN core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 439 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLU core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 440 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 441 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ARG core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 442 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 443 in file ../GFP-GFP_complex.pdb. Best match rsd_type: HIS_D core.io.pdb.file_data: [ WARNING ] discarding 7 atoms at position 444 in file ../GFP-GFP_complex.pdb. Best match rsd_type: MET core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 446 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 447 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 448 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 449 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PHE core.io.pdb.file_data: [ WARNING ] discarding 3 atoms at position 452 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ALA core.io.pdb.file_data: [ WARNING ] discarding 3 atoms at position 453 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ALA core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 454 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 455 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ILE core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 457 in file ../GFP-GFP_complex.pdb. Best match rsd_type: HIS core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 458 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY:CtermProteinFull core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue LYS 51 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD on residue LYS 51 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE on residue LYS 51 core.conformation.Conformation: [ WARNING ] missing heavyatom: NZ on residue LYS 51 core.conformation.Conformation: [ WARNING ] missing heavyatom: O on residue CRO 64 core.conformation.Conformation: [ WARNING ] missing heavyatom: N on residue CRO 64 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue LYS 153 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD on residue LYS 153 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE on residue LYS 153 core.conformation.Conformation: [ WARNING ] missing heavyatom: NZ on residue LYS 153 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue GLN 154 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD on residue GLN 154 core.conformation.Conformation: [ WARNING ] missing heavyatom: OE1 on residue GLN 154 core.conformation.Conformation: [ WARNING ] missing heavyatom: NE2 on residue GLN 154 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue LYS 155 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD on residue LYS 155 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE on residue LYS 155 core.conformation.Conformation: [ WARNING ] missing heavyatom: NZ on residue LYS 155 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue LYS 211 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD on residue LYS 211 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE on residue LYS 211 core.conformation.Conformation: [ WARNING ] missing heavyatom: NZ on residue LYS 211 core.conformation.Conformation: [ WARNING ] missing heavyatom: OXT on residue GLY:CtermProteinFull 229 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue ILE 242 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue ILE 275 core.conformation.Conformation: [ WARNING ] missing heavyatom: O on residue CRO 293 core.conformation.Conformation: [ WARNING ] missing heavyatom: N on residue CRO 293 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue ILE 324 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue ILE 349 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue ILE 354 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue ILE 362 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue ILE 378 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue ILE 387 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue ILE 393 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue ILE 414 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue ILE 455 core.conformation.Conformation: [ WARNING ] missing heavyatom: O on residue GLY:CtermProteinFull 458 core.conformation.Conformation: [ WARNING ] missing heavyatom: OXT on residue GLY:CtermProteinFull 458 core.io.pdb.file_data: [ WARNING ] can't find atom for res 64 atom N1 (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 64 atom O3 (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 242 atom CD (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 275 atom CD (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 293 atom N1 (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 293 atom O3 (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 324 atom CD (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 349 atom CD (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 354 atom CD (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 362 atom CD (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 378 atom CD (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 387 atom CD (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 393 atom CD (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 414 atom CD (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 455 atom CD (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 458 atom OC1 (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 458 atom OC2 (trying to set temp) core.pack.pack_missing_sidechains: packing residue number 51 because of missing atom number 6 atom name CG core.pack.pack_missing_sidechains: packing residue number 64 because of missing atom number 15 atom name O core.pack.pack_missing_sidechains: packing residue number 153 because of missing atom number 6 atom name CG core.pack.pack_missing_sidechains: packing residue number 154 because of missing atom number 6 atom name CG core.pack.pack_missing_sidechains: packing residue number 155 because of missing atom number 6 atom name CG core.pack.pack_missing_sidechains: packing residue number 211 because of missing atom number 6 atom name CG core.pack.pack_missing_sidechains: packing residue number 242 because of missing atom number 8 atom name CD1 core.pack.pack_missing_sidechains: packing residue number 275 because of missing atom number 8 atom name CD1 core.pack.pack_missing_sidechains: packing residue number 293 because of missing atom number 15 atom name O core.pack.pack_missing_sidechains: packing residue number 324 because of missing atom number 8 atom name CD1 core.pack.pack_missing_sidechains: packing residue number 349 because of missing atom number 8 atom name CD1 core.pack.pack_missing_sidechains: packing residue number 354 because of missing atom number 8 atom name CD1 core.pack.pack_missing_sidechains: packing residue number 362 because of missing atom number 8 atom name CD1 core.pack.pack_missing_sidechains: packing residue number 378 because of missing atom number 8 atom name CD1 core.pack.pack_missing_sidechains: packing residue number 387 because of missing atom number 8 atom name CD1 core.pack.pack_missing_sidechains: packing residue number 393 because of missing atom number 8 atom name CD1 core.pack.pack_missing_sidechains: packing residue number 414 because of missing atom number 8 atom name CD1 core.pack.pack_missing_sidechains: packing residue number 455 because of missing atom number 8 atom name CD1 core.pack.task: Packer task: initialize from command line() core.scoring.ScoreFunctionFactory: SCOREFUNCTION: talaris2013 core.pack.rotamer_set.RotamerSet_: Using simple Rotamer generation logic for CRO core.pack.rotamer_set.RotamerSet_: Using simple Rotamer generation logic for CRO core.pack.pack_rotamers: built 164 rotamers at 18 positions. core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: IG: 17400 bytes protocols.evaluation.ChiWellRmsdEvaluatorCreator: Evaluation Creator active ... protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from PDB GFP-GFP_complex_0001.pdb core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 64 in file ../GFP-GFP_complex.pdb. Best match rsd_type: CRO core.io.pdb.file_data: [ WARNING ] discarding 5 atoms at position 230 in file ../GFP-GFP_complex.pdb. Best match rsd_type: SER:NtermProteinFull core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 231 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 232 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 233 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLU core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 234 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 235 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 236 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PHE core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 238 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 241 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PRO core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 242 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ILE core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 243 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 245 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 246 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 247 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 248 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 249 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 251 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASN core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 252 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 253 in file ../GFP-GFP_complex.pdb. Best match rsd_type: HIS_D core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 254 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 255 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PHE core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 256 in file ../GFP-GFP_complex.pdb. Best match rsd_type: SER core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 258 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ARG core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 259 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 260 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 261 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 262 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 263 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 264 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 3 atoms at position 265 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ALA core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 267 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASN core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 268 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 269 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 270 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 272 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 273 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 274 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PHE core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 275 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ILE core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 276 in file ../GFP-GFP_complex.pdb. Best match rsd_type: CYS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 279 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 280 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 281 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 282 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PRO core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 284 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PRO core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 285 in file ../GFP-GFP_complex.pdb. Best match rsd_type: TRP core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 286 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PRO core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 288 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 292 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 3 atoms at position 293 in file ../GFP-GFP_complex.pdb. Best match rsd_type: CRO core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 295 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLN core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 296 in file ../GFP-GFP_complex.pdb. Best match rsd_type: CYS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 297 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PHE core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 298 in file ../GFP-GFP_complex.pdb. Best match rsd_type: SER core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 299 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ARG core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 300 in file ../GFP-GFP_complex.pdb. Best match rsd_type: TYR core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 301 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PRO core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 302 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 303 in file ../GFP-GFP_complex.pdb. Best match rsd_type: HIS core.io.pdb.file_data: [ WARNING ] discarding 7 atoms at position 304 in file ../GFP-GFP_complex.pdb. Best match rsd_type: MET core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 305 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 306 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ARG core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 307 in file ../GFP-GFP_complex.pdb. Best match rsd_type: HIS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 308 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 309 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PHE core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 310 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PHE core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 311 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 312 in file ../GFP-GFP_complex.pdb. Best match rsd_type: SER core.io.pdb.file_data: [ WARNING ] discarding 3 atoms at position 313 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ALA core.io.pdb.file_data: [ WARNING ] discarding 7 atoms at position 314 in file ../GFP-GFP_complex.pdb. Best match rsd_type: MET core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 315 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PRO core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 316 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 317 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 318 in file ../GFP-GFP_complex.pdb. Best match rsd_type: TYR core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 320 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLN core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 321 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLU core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 322 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ARG core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 324 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ILE core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 325 in file ../GFP-GFP_complex.pdb. Best match rsd_type: SER core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 326 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PHE core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 327 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 328 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 329 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 330 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 332 in file ../GFP-GFP_complex.pdb. Best match rsd_type: TYR core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 333 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 335 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ARG core.io.pdb.file_data: [ WARNING ] discarding 3 atoms at position 336 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ALA core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 337 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLU core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 339 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 340 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PHE core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 341 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 342 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 343 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 345 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 347 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASN core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 348 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ARG core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 349 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ILE core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 350 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 351 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 352 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 353 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 354 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ILE core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 355 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 356 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PHE core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 357 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 358 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 359 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 360 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 361 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASN core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 362 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ILE core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 363 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 364 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 365 in file ../GFP-GFP_complex.pdb. Best match rsd_type: HIS core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 366 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 367 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 368 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 369 in file ../GFP-GFP_complex.pdb. Best match rsd_type: TYR core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 370 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASN core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 371 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PHE core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 372 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASN core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 373 in file ../GFP-GFP_complex.pdb. Best match rsd_type: SER core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 374 in file ../GFP-GFP_complex.pdb. Best match rsd_type: HIS_D core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 375 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASN core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 377 in file ../GFP-GFP_complex.pdb. Best match rsd_type: TYR core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 378 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ILE core.io.pdb.file_data: [ WARNING ] discarding 3 atoms at position 380 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ALA core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 381 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 382 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 383 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLN core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 384 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 385 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASN core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 386 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 387 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ILE core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 388 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 3 atoms at position 389 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ALA core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 390 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASN core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 391 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PHE core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 392 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 393 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ILE core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 394 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ARG core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 395 in file ../GFP-GFP_complex.pdb. Best match rsd_type: HIS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 396 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASN core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 398 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 399 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 400 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 401 in file ../GFP-GFP_complex.pdb. Best match rsd_type: SER core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 403 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLN core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 404 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 3 atoms at position 405 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ALA core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 406 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 3 atoms at position 407 in file ../GFP-GFP_complex.pdb. Best match rsd_type: HIS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 408 in file ../GFP-GFP_complex.pdb. Best match rsd_type: TYR core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 409 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLN core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 410 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLN core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 411 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASN core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 413 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PRO core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 414 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ILE core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 415 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 416 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 417 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 418 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PRO core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 420 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 421 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 422 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PRO core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 423 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 424 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASN core.io.pdb.file_data: [ WARNING ] discarding 3 atoms at position 425 in file ../GFP-GFP_complex.pdb. Best match rsd_type: HIS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 426 in file ../GFP-GFP_complex.pdb. Best match rsd_type: TYR core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 427 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 428 in file ../GFP-GFP_complex.pdb. Best match rsd_type: SER core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 430 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLN core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 431 in file ../GFP-GFP_complex.pdb. Best match rsd_type: SER core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 433 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 434 in file ../GFP-GFP_complex.pdb. Best match rsd_type: SER core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 435 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 436 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 437 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PRO core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 438 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASN core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 439 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLU core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 440 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 441 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ARG core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 442 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 443 in file ../GFP-GFP_complex.pdb. Best match rsd_type: HIS_D core.io.pdb.file_data: [ WARNING ] discarding 7 atoms at position 444 in file ../GFP-GFP_complex.pdb. Best match rsd_type: MET core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 446 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 447 in file ../GFP-GFP_complex.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 448 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 449 in file ../GFP-GFP_complex.pdb. Best match rsd_type: PHE core.io.pdb.file_data: [ WARNING ] discarding 3 atoms at position 452 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ALA core.io.pdb.file_data: [ WARNING ] discarding 3 atoms at position 453 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ALA core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 454 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 455 in file ../GFP-GFP_complex.pdb. Best match rsd_type: ILE core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 457 in file ../GFP-GFP_complex.pdb. Best match rsd_type: HIS core.io.pdb.file_data: [ WARNING ] discarding 4 atoms at position 458 in file ../GFP-GFP_complex.pdb. Best match rsd_type: GLY:CtermProteinFull core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue LYS 51 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD on residue LYS 51 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE on residue LYS 51 core.conformation.Conformation: [ WARNING ] missing heavyatom: NZ on residue LYS 51 core.conformation.Conformation: [ WARNING ] missing heavyatom: O on residue CRO 64 core.conformation.Conformation: [ WARNING ] missing heavyatom: N on residue CRO 64 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue LYS 153 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD on residue LYS 153 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE on residue LYS 153 core.conformation.Conformation: [ WARNING ] missing heavyatom: NZ on residue LYS 153 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue GLN 154 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD on residue GLN 154 core.conformation.Conformation: [ WARNING ] missing heavyatom: OE1 on residue GLN 154 core.conformation.Conformation: [ WARNING ] missing heavyatom: NE2 on residue GLN 154 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue LYS 155 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD on residue LYS 155 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE on residue LYS 155 core.conformation.Conformation: [ WARNING ] missing heavyatom: NZ on residue LYS 155 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue LYS 211 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD on residue LYS 211 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE on residue LYS 211 core.conformation.Conformation: [ WARNING ] missing heavyatom: NZ on residue LYS 211 core.conformation.Conformation: [ WARNING ] missing heavyatom: OXT on residue GLY:CtermProteinFull 229 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue ILE 242 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue ILE 275 core.conformation.Conformation: [ WARNING ] missing heavyatom: O on residue CRO 293 core.conformation.Conformation: [ WARNING ] missing heavyatom: N on residue CRO 293 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue ILE 324 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue ILE 349 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue ILE 354 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue ILE 362 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue ILE 378 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue ILE 387 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue ILE 393 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue ILE 414 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue ILE 455 core.conformation.Conformation: [ WARNING ] missing heavyatom: O on residue GLY:CtermProteinFull 458 core.conformation.Conformation: [ WARNING ] missing heavyatom: OXT on residue GLY:CtermProteinFull 458 core.io.pdb.file_data: [ WARNING ] can't find atom for res 64 atom N1 (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 64 atom O3 (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 242 atom CD (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 275 atom CD (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 293 atom N1 (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 293 atom O3 (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 324 atom CD (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 349 atom CD (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 354 atom CD (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 362 atom CD (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 378 atom CD (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 387 atom CD (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 393 atom CD (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 414 atom CD (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 455 atom CD (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 458 atom OC1 (trying to set temp) core.io.pdb.file_data: [ WARNING ] can't find atom for res 458 atom OC2 (trying to set temp) core.pack.pack_missing_sidechains: packing residue number 51 because of missing atom number 6 atom name CG core.pack.pack_missing_sidechains: packing residue number 64 because of missing atom number 15 atom name O core.pack.pack_missing_sidechains: packing residue number 153 because of missing atom number 6 atom name CG core.pack.pack_missing_sidechains: packing residue number 154 because of missing atom number 6 atom name CG core.pack.pack_missing_sidechains: packing residue number 155 because of missing atom number 6 atom name CG core.pack.pack_missing_sidechains: packing residue number 211 because of missing atom number 6 atom name CG core.pack.pack_missing_sidechains: packing residue number 242 because of missing atom number 8 atom name CD1 core.pack.pack_missing_sidechains: packing residue number 275 because of missing atom number 8 atom name CD1 core.pack.pack_missing_sidechains: packing residue number 293 because of missing atom number 15 atom name O core.pack.pack_missing_sidechains: packing residue number 324 because of missing atom number 8 atom name CD1 core.pack.pack_missing_sidechains: packing residue number 349 because of missing atom number 8 atom name CD1 core.pack.pack_missing_sidechains: packing residue number 354 because of missing atom number 8 atom name CD1 core.pack.pack_missing_sidechains: packing residue number 362 because of missing atom number 8 atom name CD1 core.pack.pack_missing_sidechains: packing residue number 378 because of missing atom number 8 atom name CD1 core.pack.pack_missing_sidechains: packing residue number 387 because of missing atom number 8 atom name CD1 core.pack.pack_missing_sidechains: packing residue number 393 because of missing atom number 8 atom name CD1 core.pack.pack_missing_sidechains: packing residue number 414 because of missing atom number 8 atom name CD1 core.pack.pack_missing_sidechains: packing residue number 455 because of missing atom number 8 atom name CD1 core.pack.task: Packer task: initialize from command line() core.scoring.ScoreFunctionFactory: SCOREFUNCTION: talaris2013 core.pack.rotamer_set.RotamerSet_: Using simple Rotamer generation logic for CRO core.pack.rotamer_set.RotamerSet_: Using simple Rotamer generation logic for CRO core.pack.pack_rotamers: built 164 rotamers at 18 positions. core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph core.pack.interaction_graph.interaction_graph_factory: IG: 17400 bytes core.scoring.ScoreFunctionFactory: SCOREFUNCTION: talaris2013 protocols.docking.DockingInitialPerturbation: Reading options... protocols.docking.DockingProtocol: Setting docking foldtree protocols.docking.DockingProtocol: old fold tree: FOLD_TREE EDGE 1 229 -1 EDGE 1 230 1 EDGE 230 458 -1 protocols.docking.DockingProtocol: new fold tree: FOLD_TREE EDGE 1 64 -1 EDGE 64 229 -1 EDGE 64 293 1 EDGE 293 230 -1 EDGE 293 458 -1 protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// core.chemical: Warning: protein residue 08A is not explicitly listed as either L or D in its params file. core.chemical: To avoid seeing this warning in the future, add "L_AA", "D_AA", or "ACHIRAL_BACKBONE" to the "PROPERTIES" line of the params file. core.chemical: Warning: protein residue 08B is not explicitly listed as either L or D in its params file. core.chemical: To avoid seeing this warning in the future, add "L_AA", "D_AA", or "ACHIRAL_BACKBONE" to the "PROPERTIES" line of the params file. core.chemical.ResidueTypeSet: Finished initializing centroid residue type set. Created 61 residue types core.chemical.ResidueTypeSet: Total time to initialize 0.03798 seconds. protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0001 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0001 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0002 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0002 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0003 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0003 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0004 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0004 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0005 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0005 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0006 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0006 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0007 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0007 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0008 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0008 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0009 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0009 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0010 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0010 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0011 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0011 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0012 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0012 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0013 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0013 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0014 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0014 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0015 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0015 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0016 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0016 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0017 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0017 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0018 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0018 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0019 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0019 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0020 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0020 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0021 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0021 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0022 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0022 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0023 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0023 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0024 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0024 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0025 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0025 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0026 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0026 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0027 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0027 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0028 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0028 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0029 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0029 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0030 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0030 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0031 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0031 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0032 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0032 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0033 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0033 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0034 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0034 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0035 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0035 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0036 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0036 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0037 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0037 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0038 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0038 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0039 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0039 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0040 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0040 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0041 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0041 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0042 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0042 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0043 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0043 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0044 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0044 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0045 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0045 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0046 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0046 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0047 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0047 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0048 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0048 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0049 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0049 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0050 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0050 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0051 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0051 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingProtocol: /// Rosetta 3 Docking Protocol /// protocols.docking.DockingProtocol: /// /// protocols.docking.DockingProtocol: /// Dockable Jumps: 1 /// protocols.docking.DockingProtocol: /// Low Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// High Resolution Docking Protocol: on /// protocols.docking.DockingProtocol: /// Low Resolution Filter: on /// protocols.docking.DockingProtocol: /// High Resolution Filter: on /// protocols.docking.DockingProtocol: //////////////////////////////////////////////////////////////////////////////// protocols.jd2.JobDistributor: [ERROR] Exception caught by JobDistributor for job GFP-GFP_complex_0001_0052 [ERROR] EXCN_utility_exit has been thrown from: src/core/util/SwitchResidueTypeSet.cc line: 296 ERROR: core::util::switch_to_residue_type_set fails protocols.jd2.JobDistributor: GFP-GFP_complex_0001_0052 reported failure and will NOT retry protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job protocols.jd2.PDBJobInputter: filling pose from saved copy GFP-GFP_complex_0001.pdb Got some signal... It is:2 Ctrl-c was pressed!