Dependency 'nr_pfilt' does not exist! Running install_dependencies.pl Note: the NCBI non-redundant (nr) sequence database is very large. Please be patient..... Formatting nr_pfilt fasta. Be very very very patient ...... /scratch/fhgfs/jws6pq/ros/main/tools/frg_tls/blast/bin/formatdb -o T -i /scratch/fhgfs/jws6pq/ros/main/tools/frg_tls/databases/nr_pfilt -v 10000 fragment sizes: 3 9 no id specified. parsing filename instead. cannot parse id from filename so using 't001_' ID: t001 CHAIN: _ Assuming /scratch/fhgfs/jws6pq/Input/ab42c8a0-7d52-11eb-a871-00163e100d53.ss2 is a psipred file. picking fragments with options: DEBUG: 1 add_pdbs_to_vall: chain: _ cleanup: 1 csbuild_profile: 0 exclude_homologs_by_pdb_date: 0 f: sequence.fasta fastafile: t001_.fasta frag_sizes: 3,9 frags: 1 homs: 1 id: t001 n_candidates: 200 n_frags: 200 old_name_format: 0 porter: 0 porterfile: psipred: 0 psipredfile: ab42c8a0-7d52-11eb-a871-00163e100d53.ss2 rundir: /scratch/fhgfs/jws6pq/Input runid: t001_ sam: 0 samfile: torsion_bin: 0 verbose: 1 -------------------------------------------------------------------------------- FILENAME: t001_.fasta Sequence: MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT Running sparks for phi, psi, and solvent accessibility predictions running psiblast for sequence: t001_.fasta At line 180 of file phipsi_ss0.f Fortran runtime error: Bad real number in item 3 of list input Aborting: Can't run first SS0 predictor Error in file: t001_.fasta.phipsi