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READ THIS BEFORE YOU POST

Submitted by Sergey on Thu, 2011-02-03 09:58

When posting build/install question please specify the following information about your system and PyRosetta version, this will allow us to answer your questions more accurate and faster:

- OS type,
- OS version
- OS arch (32 or 64bit)
for example: Ubuntu Linux 10.04 32Bit or Mac OS X 10.6

- Python version
- Python arch (32 or 64bit) if different from OS

- Version of PyRosetta including SVN revision number.

Thank you!

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PyRosetta - Build/Install

Unable to get non-commercial license to get username/password

Submitted by David123 on Fri, 2024-05-17 15:39
Category: 
PyRosetta

Hi team,

As noted in the steps to get non commercial license, there is a license form people can fill up to register for username/password to use Pyrosetta. Seems the form is unable to find.

Thanks for assistance.

 

david

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PyRosetta - Build/Install

PDB file showing error - missing heavyatom: OXT on residue LYS:CtermProteinFull 59

Submitted by intomybioverse on Wed, 2024-05-15 23:38
Category: 
Design

Hello everyone!

I am redesigning the specificity of a protein and make it interact with a DNA sequence. I am trying to run the RosettaDNA application program based on the demos. However, I am getting this error.

core.io.pose_from_sfr.PoseFromSFRBuilder: [ WARNING ] discarding 1 atoms at position 89 in file myfile.pdb. Best match rsd_type:  ADE:UpperDNA
core.conformation.Conformation: [ WARNING ] missing heavyatom:  OXT on residue LYS:CtermProteinFull 59

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Rosetta 3 - Applications

Issues with rosetta numbering and keeping ligand when relaxing molecule.

Submitted by Wexter300 on Sun, 2024-04-28 14:37
Category: 
Design
[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2021.16+release.8ee4f02
[COMMIT_DATE]: 2021-04-20T20:52:25.363712
[APPLICATION]: /pub/erikps/Rosetta3.14/main/source//bin/cartesian_ddg.static.linuxgccrelease
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version "4.8.5 20150623 (Red Hat 4.8.5-39)"
[STDLIB]: libstdc++ version 20150623
[START_OPTIONS]
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Rosetta 3 - General

Segmentation fault (core dumped) in rosettaDNA.static.linuxgccrelease

Submitted by intomybioverse on Sun, 2024-04-28 04:51
Category: 
Design

Hello everyone!

I am trying to redesign the protein-DNA interface to introduce novel interactions between a protein and a DNA molecule using the RosettaDNA application suite. 

I am getting this error after running the program. Can you help to fix this?

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Forums: 
Rosetta 3 - Applications

clustering PDBs from docking

Submitted by jbujons on Wed, 2024-04-24 08:34
Category: 
Docking

Hi,

I performed a protein-protein docking within rosetta by using a single receptor structure and several conformations of the same ligand protein. Now I am trying to cluster the results (aprox 1000 structures) using the cluster application included in rosetta by running:

cluster.linuxgccrelease -in:file:l pdblist -in::file::fullatom

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Forums: 
Rosetta 3 - General

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