You are here
ROSIE - General
Log in to post new content in the forum.
| Topic / Topic starter |
Replies |
Views | Last post | |
|---|---|---|---|---|
|
Sticky:
ROSIE FAQ by Sergey » Mon, 2013-04-08 10:41 |
6 |
31,003 |
by G-Jade Fri, 2020-12-18 22:40 |
|
|
m6A modification on FARFAR2 by uke » Mon, 2023-09-18 04:31 |
0 |
488 |
by uke Mon, 2023-09-18 04:31 |
|
|
Rosettadock Error by jinfeng » Fri, 2022-11-18 20:39 |
0 |
824 |
by jinfeng Fri, 2022-11-18 20:39 |
|
|
farfar2 failed by Kamonwan » Mon, 2023-01-23 18:41 |
0 |
558 |
by Kamonwan Mon, 2023-01-23 18:41 |
|
|
account does not have verified academic email address by haria256 » Sat, 2022-07-02 03:33 |
0 |
625 |
by haria256 Sat, 2022-07-02 03:33 |
|
|
Antibody Job Failed by aquilesms89 » Thu, 2020-08-13 08:50 |
0 |
1,522 |
by aquilesms89 Thu, 2020-08-13 08:50 |
|
|
Correctly Formatting a PDB file for analysis of a Zinc Finger Motif by rslack » Thu, 2022-04-28 18:19 |
0 |
634 |
by rslack Thu, 2022-04-28 18:38 |
|
|
Academic email verification by Yair Tenorio » Mon, 2023-10-23 12:18 |
0 |
439 |
by Yair Tenorio Mon, 2023-10-23 12:18 |
|
|
Relax application before ROSIE by mwinn99 » Wed, 2022-05-25 13:23 |
0 |
639 |
by mwinn99 Wed, 2022-05-25 13:23 |
|
|
Ways to improve ROSIE docking2 jobs by AdoCbl » Wed, 2015-09-23 15:12 |
0 |
1,843 |
by AdoCbl Wed, 2015-09-23 15:12 |
|
|
my status jobs been queued in such longer time by Atirah » Fri, 2020-04-10 02:55 |
0 |
1,623 |
by Atirah Fri, 2020-04-10 02:57 |
|
|
Extracting starting coordinates from ligand docking output by rgb6@le.ac.uk » Wed, 2023-03-08 02:03 |
0 |
627 |
by rgb6@le.ac.uk Wed, 2023-03-08 02:03 |
|
|
Cancel / delete Rosie not working by fglaser » Tue, 2015-07-07 01:14 |
0 |
1,939 |
by fglaser Tue, 2015-07-07 01:14 |
|
|
Transitioning from ROSIE to Rosetta by AdoCbl » Wed, 2015-09-23 11:49 |
0 |
1,908 |
by AdoCbl Wed, 2015-09-23 11:49 |
|
|
antibody-antigen interface score by jessye » Sun, 2018-07-01 21:12 |
0 |
1,637 |
by jessye Sun, 2018-07-01 21:12 |
|
|
ROSIE ANTIBODY GRAFTING by izzafajriani » Sat, 2023-02-25 01:28 |
0 |
551 |
by izzafajriani Sat, 2023-02-25 01:28 |
|
|
Symmetric Docking Protocol by Sergey » Tue, 2013-10-29 17:33 |
0 |
5,647 |
by Sergey Mon, 2014-04-21 06:48 |
|
|
getting right protonation state from PKa of Rosie by hajar » Fri, 2020-07-24 16:24 |
0 |
1,235 |
by hajar Fri, 2020-07-24 16:24 |
|
|
Ways to improve both docking2 and symmetric_docking jobs by AdoCbl » Wed, 2015-09-23 14:43 |
0 |
1,954 |
by AdoCbl Wed, 2015-09-23 15:35 |
|
|
Erraser single-residue protocol now open to public by Sergey » Thu, 2012-10-25 18:21 |
0 |
2,270 |
by Sergey Mon, 2014-04-21 06:47 |
|
|
Ligand Docking Protocol now available for academic users by Sergey » Sat, 2014-05-10 14:39 |
0 |
2,392 |
by Sergey Sat, 2014-05-10 14:39 |
|
|
Verification by davelansing » Wed, 2023-07-05 12:09 |
0 |
321 |
by davelansing Wed, 2023-07-05 12:10 |
|
|
FARFAR2 - Extra Minimize Hangs on Submittal by jvogt » Thu, 2022-06-16 09:41 |
0 |
645 |
by jvogt Thu, 2022-06-16 09:41 |
|
|
problem in downloading result from backrub server by ladimafakher » Sun, 2018-07-01 00:50 |
0 |
1,416 |
by ladimafakher Sun, 2018-07-01 00:50 |
|
|
Rosetta processes crashed by izzafajriani » Thu, 2023-02-23 15:35 |
0 |
580 |
by izzafajriani Thu, 2023-02-23 15:35 |
|
|
Questions about SnugDock result analysis by LTJ » Thu, 2020-07-02 17:41 |
0 |
1,394 |
by LTJ Thu, 2020-07-02 17:41 |
|
|
Ligand Binding by KS Siddiqui » Thu, 2019-04-25 01:01 |
0 |
1,403 |
by KS Siddiqui Thu, 2019-04-25 01:01 |
|
|
Rosetta-Vienna RNP-ddG failed by Athena Chu » Mon, 2022-04-18 18:21 |
0 |
641 |
by Athena Chu Mon, 2022-04-18 18:21 |
|
|
Running ROSIE from terminal by sc19 » Thu, 2022-07-14 01:09 |
0 |
565 |
by sc19 Thu, 2022-07-14 01:09 |
|
|
Erraser protocol now open to public by Sergey » Wed, 2012-10-17 12:38 |
0 |
2,316 |
by Sergey Mon, 2014-04-21 06:47 |
|
|
ROSETTA design affinity optimization by wentlewi » Mon, 2020-02-03 01:42 |
0 |
1,709 |
by wentlewi Mon, 2020-02-03 01:42 |
|
|
pKa app is now public! by Sergey » Mon, 2014-03-10 15:47 |
0 |
3,831 |
by Sergey Mon, 2014-03-10 15:47 |
|
|
Results are NOT emailed by alsayeghkn » Wed, 2022-03-23 08:55 |
0 |
613 |
by alsayeghkn Wed, 2022-03-23 08:55 |
|
|
I have jobs queued for nearly 1 month by jessye » Thu, 2019-10-10 03:36 |
0 |
1,479 |
by jessye Thu, 2019-10-10 03:36 |
|
|
ROSIE pKa calculation issue by lijum » Mon, 2020-06-15 12:12 |
0 |
1,357 |
by lijum Mon, 2020-06-15 12:12 |
|
|
Sequence Tolerance broken links? by dnamkr » Fri, 2021-10-22 11:34 |
0 |
800 |
by dnamkr Fri, 2021-10-22 11:34 |
|
|
Problem with ROSIE antibody modeling by wildchipiron » Thu, 2016-04-14 20:00 |
0 |
1,941 |
by wildchipiron Thu, 2016-04-14 20:00 |
|
|
Multiple antibody jobs failed by larae » Mon, 2022-09-12 09:54 |
0 |
549 |
by larae Mon, 2022-09-12 09:54 |
|
|
Nanobody prediction using ROSIE ? by esozdemir » Thu, 2019-06-20 11:14 |
1 |
2,211 |
by rmoretti Mon, 2019-06-24 12:02 |
|
|
ROSIE Queue not loading by ramon-arg » Mon, 2023-07-31 10:09 |
1 |
428 |
by Sergey Mon, 2023-07-31 11:45 |
|
|
Academic address not verified during Rosie login by schacherl » Fri, 2022-10-07 02:06 |
1 |
848 |
by Sergey Fri, 2022-10-07 15:28 |
|
|
Rosie server stuck?? by David Weis » Sun, 2017-03-05 13:37 |
1 |
2,522 |
by smlewis Mon, 2017-03-06 08:58 |
|
|
academic institution domain is not listed by ruma99 » Tue, 2022-05-24 08:33 |
1 |
877 |
by Sergey Tue, 2022-05-24 10:45 |
|
|
Academic email verification by dianahinojosa » Fri, 2023-10-27 19:17 |
1 |
347 |
by Sergey Mon, 2023-10-30 11:48 |
|
|
Deleting ones "own" guest job a to reduce server load by Protein fan » Thu, 2017-10-26 01:26 |
1 |
2,531 |
by rmoretti Fri, 2017-12-01 11:24 |
|
|
Let docking2 jobs list the scores for the input proteins.pdb file by AdoCbl » Wed, 2015-09-23 12:24 |
1 |
2,855 |
by AdoCbl Thu, 2015-09-24 11:38 |
|
|
Academic email recognition by SamyC » Fri, 2024-03-15 08:57 |
1 |
164 |
by Sergey Tue, 2024-03-19 11:30 |
|
|
SNUGDOCK by harsh » Tue, 2018-10-09 23:58 |
1 |
2,261 |
by Sergey Tue, 2018-10-16 15:52 |
|
|
ROSIE antibody modeling- discontinuity in backbone by wagnerek » Tue, 2015-10-27 10:18 |
1 |
2,853 |
by rmoretti Wed, 2015-11-25 12:53 |
|
|
missing residues while Rosie Modeling by jguan » Mon, 2014-08-11 06:56 |
1 |
4,480 |
by jadolfbr Tue, 2014-10-21 08:46 |
|
|
Support for local install of ROSIE? by jjv5 » Mon, 2022-03-21 08:58 |
1 |
919 |
by Sergey Mon, 2022-03-21 12:10 |
|
|
Academic email verification by NBailly » Tue, 2024-04-30 03:37 |
1 |
79 |
by Sergey Wed, 2024-05-01 13:06 |
|
|
SnugDocking result interpretation by jessye » Mon, 2019-05-27 03:43 |
1 |
2,036 |
by jeliazkov Tue, 2019-05-28 13:36 |
|
|
Academic verification by AnaFernandes-CTN » Tue, 2023-05-30 08:57 |
1 |
521 |
by Sergey Tue, 2023-05-30 11:32 |
|
|
Prepack step fail in docking2 by gretahultqvist » Thu, 2015-06-11 00:20 |
1 |
3,254 |
by rmoretti Fri, 2015-07-03 12:14 |
|
|
FARFAR2 structure prediction give a circular RNA by jitz » Thu, 2019-07-25 04:58 |
1 |
2,219 |
by everyday847 Mon, 2019-11-11 14:39 |
|
|
SNUGDOCK by adva » Sun, 2017-07-16 00:46 |
1 |
2,260 |
by rmoretti Mon, 2017-07-17 07:57 |
|
|
Academic email verification by ssrn » Tue, 2023-12-12 05:14 |
1 |
312 |
by Sergey Tue, 2023-12-12 10:52 |
|
|
I am a PhD student in biochemistry at the Institute of Biochemistry and Biophysics (IBB) in Tehran, Iran, but my GitHub accou by mrabolhasan » Mon, 2024-02-19 22:41 |
1 |
215 |
by rmoretti Tue, 2024-02-20 06:54 |
|
|
SnugDock: chain_id H represents more than one chain by tweetman » Wed, 2018-05-02 04:24 |
1 |
2,813 |
by sheehajh Wed, 2018-05-02 06:38 |
|
|
Beta-Peptide Design Protocol now available for academic users by Sergey » Wed, 2012-11-28 12:32 |
1 |
7,865 |
by jaw315 Thu, 2022-06-09 10:26 |
|
|
farfar2 error by debostuti » Thu, 2021-10-07 23:10 |
1 |
1,236 |
by everyday847 Fri, 2021-10-08 10:29 |
|
|
academic email by kbartholomeeusen » Fri, 2024-03-29 07:39 |
1 |
102 |
by Sergey Fri, 2024-03-29 16:59 |
|
|
Snugdock versus Docking with an ensemble of protein conformations by MIke Kent » Fri, 2019-03-29 10:07 |
1 |
2,099 |
by jeliazkov Fri, 2019-03-29 10:34 |
|
|
Docking two proteins with interfacing ligand by luisalles » Tue, 2016-04-05 23:56 |
1 |
2,871 |
by rmoretti Fri, 2016-04-29 09:27 |
|
|
Academic Email by Teo » Tue, 2022-09-06 08:42 |
1 |
979 |
by Sergey Tue, 2022-09-06 11:10 |
|
|
Rosie vip function fails on multiple tries by Amy F » Sat, 2019-06-15 12:51 |
1 |
1,937 |
by rmoretti Mon, 2019-06-24 12:20 |
|
|
Academic email address verification by whu » Thu, 2023-07-06 09:29 |
1 |
469 |
by Sergey Fri, 2023-07-07 10:41 |
|
|
Rosetta Antibody by Maryam_tabasinezhad » Sun, 2016-08-28 00:29 |
1 |
2,794 |
by smlewis Sun, 2016-08-28 12:04 |
|
|
Academic address not verified during Rosie login by Jean-Etienne » Thu, 2022-10-06 22:49 |
1 |
773 |
by Sergey Fri, 2022-10-07 15:26 |
|
|
Error of non standard amino acid (SnugDock) by bt13d072 » Wed, 2017-03-01 19:51 |
1 |
2,863 |
by rmoretti Mon, 2017-03-06 09:14 |
|
|
Academic domain not listed by SKlab » Fri, 2022-05-20 12:03 |
1 |
861 |
by Sergey Fri, 2022-05-20 12:14 |
|
|
Academic email verification by rpracella » Wed, 2023-10-25 23:39 |
1 |
331 |
by Sergey Thu, 2023-10-26 14:27 |
|
|
Modeling Antibody Structure failed by Sunyp_IM » Sun, 2017-08-06 02:59 |
1 |
2,600 |
by rmoretti Mon, 2017-08-14 15:09 |
|
|
GitHub authentication for Rosie by ivmolle » Thu, 2023-01-19 00:21 |
1 |
653 |
by Sergey Thu, 2023-01-19 13:33 |
|
|
Antibody scoring by larae » Wed, 2022-06-22 11:14 |
1 |
866 |
by rmoretti Wed, 2022-06-22 12:00 |
|
|
Compaing interface socre of different ligands with the same protein structure by Caulobacter » Tue, 2019-12-10 12:53 |
1 |
1,915 |
by rmoretti Tue, 2019-12-10 13:10 |
|
|
Academic Email Verification by charbel.raad@ra... » Tue, 2024-01-30 05:05 |
1 |
240 |
by Sergey Tue, 2024-01-30 11:04 |
|
|
academic email verification by SamyC » Fri, 2024-03-08 08:30 |
1 |
168 |
by SamyC Sat, 2024-03-09 01:56 |
|
|
"in_progress" decoy files in some docking2 local_docking job tar archives by AdoCbl » Sun, 2015-10-18 13:47 |
1 |
2,946 |
by rmoretti Sun, 2015-10-18 13:59 |
|
|
Academic email by ruuua » Wed, 2022-08-03 01:45 |
1 |
901 |
by Sergey Thu, 2022-08-04 15:58 |
|
|
Log in to rosie by dnamkr » Tue, 2022-03-15 11:04 |
1 |
1,019 |
by Sergey Tue, 2022-03-15 11:28 |
|
|
Please add academic email by mglgc » Tue, 2024-04-23 10:24 |
1 |
82 |
by Sergey Tue, 2024-04-23 12:00 |
|
|
error in peptiderive job result by PRITAM » Wed, 2019-05-08 09:33 |
1 |
1,967 |
by rmoretti Mon, 2019-06-24 12:30 |
|
|
academic verification by Rita Melo » Fri, 2023-05-26 07:36 |
1 |
511 |
by Sergey Tue, 2023-05-30 11:31 |
|
|
Academic email verification by john2 » Tue, 2023-10-17 11:41 |
1 |
349 |
by Sergey Tue, 2023-10-17 13:13 |
|
|
antibody modeling fail by jessye » Tue, 2019-07-02 01:57 |
1 |
2,038 |
by rmoretti Wed, 2019-07-10 09:09 |
|
|
Verification via github by Mirosh » Wed, 2023-08-30 21:15 |
1 |
393 |
by rmoretti Thu, 2023-08-31 08:50 |
|
|
Academic domain not listed by benjv » Wed, 2022-05-25 10:31 |
1 |
871 |
by Sergey Thu, 2022-05-26 10:23 |
|
|
Login using GitHub by nicotomasini » Mon, 2023-01-30 09:14 |
1 |
702 |
by Sergey Mon, 2023-01-30 12:32 |
|
|
Institute for academic email recognition by CeciliaGG » Tue, 2024-03-26 05:40 |
1 |
98 |
by rmoretti Mon, 2024-04-29 10:10 |
|
|
Small molecule ligand docking in RosettaDock-4.0 by hicks139 » Thu, 2023-03-02 09:35 |
1 |
786 |
by rmoretti Thu, 2023-03-02 09:37 |
|
|
Antibody job failed by larae » Fri, 2022-03-25 11:04 |
1 |
928 |
by rmoretti Tue, 2022-03-29 15:14 |
|
|
Docking results by sujigeorge1979 » Wed, 2019-06-12 23:40 |
1 |
2,048 |
by jeliazkov Mon, 2019-06-17 06:07 |
|
|
chothia numbering error of FR_L1 by Sbrendle » Mon, 2016-08-22 06:58 |
1 |
2,563 |
by nmarze Mon, 2016-08-22 11:57 |
|
|
Academic E-mail address by Valery Veresov » Wed, 2022-10-05 05:43 |
1 |
774 |
by rmoretti Thu, 2022-10-06 09:18 |
|
|
RMSD - Score by LT » Thu, 2017-02-23 12:59 |
1 |
2,774 |
by rmoretti Thu, 2017-02-23 13:03 |
|
|
Academic Email Adress by Konstantin » Sat, 2022-11-12 02:06 |
1 |
830 |
by rmoretti Mon, 2022-11-14 07:21 |
|
|
academic institution domain is not listed by minzhi » Mon, 2022-05-16 14:26 |
1 |
899 |
by Sergey Wed, 2022-05-18 14:05 |
|
|
Access to Rosie via GitHub Authentication by Prizrak5 » Thu, 2023-01-05 01:38 |
1 |
758 |
by Sergey Thu, 2023-01-05 14:26 |
Log in to post new content in the forum.
