BridgeChains mover deletes residues at break
Submitted by kmj on Thu, 2024-02-22 12:14
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Design
Cartesian_ddG mutfile error
Submitted by paulbo on Mon, 2024-02-05 01:25
Category:
Design
Constraints
hello gus,
When i use catesian-ddg for protein stability, i want saturation site by all amino acied. but I Set "1 A ALLAA" OR "C 1 ALLAA"(first site is cys), all error.
and i type "total 9
1
C 1 A
1
C 1 W
1
C 1 F
1
C 1 I
..... " Enumerative method is OK. So， how I set mutfile more easy and clearly ? help!
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Errors about rifdock step 15
Submitted by ng98 on Thu, 2024-02-01 17:41
Category:
Design
Hi! When I tried to do more motif extraction , I ran into this error:
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Academic Email Verification
Submitted by charbel.raad@ra... on Tue, 2024-01-30 05:05
Category:
Compilation
Structure prediction
Docking
Design
ROSIE
Hello,
I would like my academic email to be validated. Institute: RadboudUMC and domain: @radboudumc.nl
Best,
Charbel
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[Question] How do the <FILTERS> confidence work?
Submitted by jrom on Wed, 2024-01-24 10:25
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Error about rifdocking step 12
Submitted by ng98 on Mon, 2024-01-08 16:27
Category:
Design
Hello, everyone I prepared paper_interface_design_pilot_commands. List when I did RIFdocking step 12 Running a pilot job. When I ran the commands, the error occurred:
basic.io.database: Database file opened: scoring/score_functions/sap_sasa_calib.dat
WARNING!! DALPHABALL output nan at index 140724834832176
DALPHABALL output indicies not matching! 1!=140724834832176
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Error about rifdocking
Submitted by ng98 on Mon, 2024-01-08 16:21
Category:
Design
Hello, everyone I prepared paper_interface_design_pilot_commands. List when I did RIFdocking step 12 Running a pilot job. When I ran the commands, the error occurred:
basic.io.database: Database file opened: scoring/score_functions/sap_sasa_calib.dat
WARNING!! DALPHABALL output nan at index 140724834832176
DALPHABALL output indicies not matching! 1!=140724834832176
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Methodology Feedback with As(III) and Pb(II) Binding
Submitted by rnogy on Mon, 2023-11-06 17:05
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Installing pyrosetta for proteinmpnn use
Submitted by lwhitm1 on Mon, 2023-11-06 04:38
Category:
Design
PyRosetta
What is the best way to install PyRosetta for use with Protein MPNN? I am installing it for myself on an hpc cluster (redhat linux 8) and haven't found much documentation outside of that for the general PyRosetta install.
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peptide design
Submitted by Miriam Gulman on Wed, 2023-10-25 00:09
Category:
Design
Hi,
I have a protien peptide complex and I want to design a peptide that will bind to the protein better the the WT peptide. What tools do you suggest I use? it can also be from
any of the other rosseta platform (or any other). My goal is to find 50 potential peptides and then test them experimentally.
Thanks,
Miriam
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