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Rosetta 3 - Applications
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docking in rosetta 3.3 by Ammu » Thu, 2012-03-15 12:03 |
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6,164 |
by smlewis Mon, 2014-04-21 06:47 |
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CS-HM-Rosetta by pwurm » Thu, 2013-03-07 12:56 |
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7,242 |
by Marius1987 Fri, 2016-02-05 07:20 |
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the flexpepdock refinement and ab-initio by tfliu » Mon, 2013-12-23 19:17 |
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6,530 |
by tfliu Mon, 2014-04-21 06:48 |
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Translate mover chain X doesnot exist. by surya » Thu, 2020-07-09 08:36 |
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3,451 |
by rmoretti Tue, 2020-07-14 10:54 |
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Abinitio doesn't run but does not give output or error by Irving » Fri, 2016-10-28 10:04 |
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5,940 |
by rmoretti Mon, 2017-01-23 08:52 |
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Relax a structure with >1 copy of a modified residue fails [Solved] by franfdez » Wed, 2012-02-08 00:47 |
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6,552 |
by franfdez Mon, 2014-04-21 06:47 |
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jd2 quits before reaching -nstruct # in roseta_scripts.mpi.linuxgccrelease by fradom » Mon, 2017-11-27 02:55 |
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5,014 |
by fradom Tue, 2017-12-05 01:52 |
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fragment_picker:[ ERROR ] UtilityExitException ERROR: can't open file: $ROSETTA/tools/fragment_tools/vall.jul19.2011.gz by yueyuedake » Wed, 2023-07-12 03:36 |
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1,072 |
by yueyuedake Sun, 2023-07-16 19:17 |
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Can I believe the antibody design result? by Sunyp_IM » Mon, 2020-11-30 03:29 |
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3,273 |
by jadolfbr Sun, 2020-12-06 17:41 |
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RosettaLigand - strange score behavior by Gerdes » Mon, 2014-02-03 02:24 |
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7,031 |
by Gerdes Fri, 2014-02-07 06:48 |
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Can't generate a cst file to use with ddg_monomer application by ctqwong » Sat, 2021-03-13 03:53 |
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3,064 |
by ctqwong Thu, 2021-03-18 02:04 |
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EMERALD method not working, Rosetta version not available for download by seba » Thu, 2023-05-04 08:14 |
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1,538 |
by rmoretti Mon, 2023-07-10 08:57 |
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Enzdes score file discrepancy between generated pdb and scores.out by eyong123 » Wed, 2015-03-25 08:52 |
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7,443 |
by eyong123 Mon, 2015-06-29 04:44 |
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Running Rosetta CM Hybridize step errors with: Scorefunction not set up for nonideal/Cartesian scoring by brspurri » Wed, 2017-03-29 13:19 |
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6,541 |
by matteoferla Mon, 2021-07-19 06:13 |
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neutral N-term and C-term by nawsad » Sun, 2013-06-09 10:20 |
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9,134 |
by helenah Thu, 2020-10-08 05:29 |
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Abinitio Relax Error from -kill_hairpins by attesor » Tue, 2014-10-28 05:33 |
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7,716 |
by rmoretti Tue, 2014-11-04 10:28 |
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How to find cluster core structure? by assignfit » Thu, 2012-03-29 20:35 |
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7,472 |
by attesor Wed, 2017-06-14 07:32 |
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Fragment files for membrane_abinitio application by sumukh21 » Sun, 2011-02-13 20:34 |
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7,006 |
by yarovoy Mon, 2014-04-21 06:47 |
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Inserting residues using RosettaRemodel by eleishaj » Tue, 2015-11-24 08:54 |
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8,609 |
by eyong123 Wed, 2015-12-09 07:17 |
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modeling phosphorylated residue by rosetter » Fri, 2011-03-18 08:13 |
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8,693 |
by smlewis Mon, 2014-04-21 06:47 |
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where is pdb2vall.py by tevang » Thu, 2013-01-24 13:35 |
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7,164 |
by dktest Mon, 2014-04-21 06:47 |
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How to write down a connection between ligand's atom and metal ion from enzyme? by Corvin » Mon, 2021-02-15 06:54 |
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3,669 |
by aloshbau Mon, 2021-03-01 20:06 |
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suppress pdb output from backrub by attesor » Mon, 2014-10-27 11:16 |
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7,307 |
by rmoretti Mon, 2014-11-03 15:47 |
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If "clustering.py" can be used for PDBs contain two chains? by lanselibai » Wed, 2014-11-05 06:05 |
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7,279 |
by lanselibai Tue, 2014-12-02 09:43 |
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Ensemble Docking in Rosetta3.5? by protos_heis » Fri, 2015-05-22 06:42 |
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8,687 |
by protos_heis Mon, 2015-06-08 07:00 |
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"ddg_monomer.linuxgccrelease" by following "High Resolution Protocol" by lanselibai » Wed, 2014-10-01 09:54 |
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10,944 |
by lanselibai Sat, 2015-01-03 08:18 |
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ddg_monomer consumes massive RAM by cossio » Fri, 2018-03-09 17:02 |
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6,440 |
by rmoretti Mon, 2018-03-19 12:12 |
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Write one's own constraint type by djpittdj » Thu, 2012-11-08 12:29 |
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6,775 |
by smlewis Mon, 2014-04-21 06:47 |
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RosettaRemodel can not work now? by myputer » Tue, 2013-08-13 16:56 |
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7,661 |
by rmoretti Mon, 2014-04-21 06:48 |
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About scorefunction. by Run » Mon, 2013-09-09 23:08 |
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7,734 |
by rmoretti Mon, 2014-04-21 06:48 |
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variable length fragments for Ab initio by attesor » Wed, 2015-07-01 06:13 |
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7,164 |
by rmoretti Tue, 2015-08-18 16:47 |
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Rosetta scoring by Dimitrov » Thu, 2012-09-20 01:54 |
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10,029 |
by attesor Mon, 2014-04-21 06:47 |
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Problem about energy score by tfliu » Tue, 2013-11-05 02:09 |
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7,844 |
by Ora Schueler-Furman Mon, 2014-04-21 06:48 |
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segmentation fault after core.kinematics.FoldTree in homology modeling by pdbb » Mon, 2012-10-08 14:27 |
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7,633 |
by rmoretti Mon, 2014-04-21 06:47 |
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ERROR: Unable to fill in missing atoms. by mieczyslaw » Tue, 2020-10-20 09:43 |
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6,516 |
by rayyoung Thu, 2021-11-18 10:13 |
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How can I prevent coordinates shift when using "loopmodel.linuxgccrelease"? by lanselibai » Tue, 2014-11-04 14:56 |
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7,881 |
by lanselibai Wed, 2014-11-12 11:17 |
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SnugDocking a VHH:antigen complex possible? by David Weis » Thu, 2017-02-16 05:57 |
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6,169 |
by rmoretti Thu, 2017-07-06 13:00 |
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Can rosetta generate a centroid model based on the rna sequence? by yels » Fri, 2021-03-26 04:06 |
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3,233 |
by yels Wed, 2021-03-31 18:31 |
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protein structure prediction using relax -- high-powered jobs by rfieldhouse » Mon, 2011-05-30 18:29 |
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7,839 |
by dimaio Mon, 2014-04-21 06:47 |
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H3 modeling takes 10 days more? by jessye » Fri, 2017-10-27 03:11 |
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5,457 |
by jessye Fri, 2017-11-03 20:15 |
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running in MPI mode and multiple scores per output PDB file? by dantimatter » Wed, 2019-10-30 09:42 |
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5,277 |
by dantimatter Wed, 2019-11-06 09:51 |
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demo of molecular replacement with rosetta (mr_rosetta) by wenchangyu2008 » Sun, 2011-03-20 05:23 |
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11,341 |
by astrofunk12 Mon, 2014-04-21 06:47 |
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Multistate design on Rosetta - no generations produced by tong » Wed, 2018-06-13 00:36 |
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5,594 |
by smlewis Thu, 2018-06-14 10:26 |
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InterfaceAnalyzer：“too many tries in fill_missing_atoms!” by mxp » Tue, 2019-08-06 00:41 |
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6,986 |
by mxp Mon, 2019-08-12 18:42 |
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Syntax to build a silent file by lanselibai » Fri, 2014-09-26 09:13 |
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10,086 |
by lanselibai Tue, 2014-09-30 03:45 |
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Problems with Ligand Docking by saxen » Fri, 2011-08-19 00:19 |
8 |
8,957 |
by glemmon Mon, 2014-04-21 06:47 |
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fixbb design using damped LJ by Anonymous » Fri, 2012-08-17 03:51 |
8 |
8,051 |
by Anonymous Mon, 2014-04-21 06:47 |
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Noncanonical amino acids by wsgosal » Tue, 2014-03-18 05:29 |
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7,673 |
by e3lm Thu, 2022-05-26 12:51 |
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SnugDock - What protocol should I use? by dfcoelho » Tue, 2018-11-27 07:32 |
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7,574 |
by dfcoelho Wed, 2018-11-28 08:07 |
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Why do non proten ligands get a very high score in kinematic loop modeling/ in general? by a_s_a » Wed, 2011-06-15 00:03 |
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8,077 |
by a_s_a Mon, 2014-04-21 06:47 |
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errors about RIFdocking by sia » Sun, 2022-07-24 20:45 |
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2,872 |
by Minghui-Du Sun, 2024-03-24 21:12 |
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Fold tree C->N: RosettaScripts by aroop » Wed, 2013-02-13 10:31 |
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8,258 |
by smlewis Mon, 2014-04-21 06:47 |
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to create the template pdb file by benniu2004 » Sat, 2012-12-29 23:04 |
8 |
8,784 |
by benniu2004 Mon, 2014-04-21 06:47 |
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Adding bridged water interaction in constraint file by purvi24 » Thu, 2019-02-28 07:01 |
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5,407 |
by purvi24 Mon, 2019-03-11 06:43 |
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[SOLVED]core.io.silent: [ WARNING ] ... by fred » Wed, 2011-10-05 07:38 |
8 |
8,186 |
by fred Mon, 2014-04-21 06:47 |
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Converting -patch replonly residues to original sequence by subha » Mon, 2017-06-26 13:39 |
8 |
6,284 |
by smlewis Tue, 2017-07-04 15:42 |
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Question about running scallo by danbo » Mon, 2021-11-29 23:25 |
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3,673 |
by danbo Wed, 2021-12-22 23:51 |
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Runnig Abinitio & score app by Gaurav_kumar » Wed, 2011-11-23 20:45 |
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11,823 |
by rmoretti Mon, 2014-04-21 06:47 |
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how to fix the ATP HETATM by using movemap or constraint file? by ziqi1234 » Mon, 2017-11-20 06:43 |
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7,144 |
by ziqi1234 Wed, 2017-11-22 06:21 |
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problems in InterfaceAnalyzer analysis by chenchaozhao » Fri, 2011-12-02 23:36 |
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8,843 |
by smlewis Mon, 2014-04-21 06:47 |
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Including waters in RosettaCM by ajkal » Thu, 2017-04-27 11:59 |
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7,863 |
by rpavlov Tue, 2017-06-06 11:45 |
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ORBITAL records in self generated .params (ligands) by ast » Thu, 2014-03-06 07:22 |
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9,345 |
by ast Thu, 2014-03-13 07:17 |
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Symmetry Docking and Clustering with Ligands by skovacs » Wed, 2012-03-07 16:46 |
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11,844 |
by Anonymous Mon, 2014-04-21 06:47 |
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Ab-initio peptide-protein docking by suhail » Sun, 2013-06-23 16:20 |
9 |
12,146 |
by rmoretti Fri, 2016-04-29 08:57 |
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cryptic error message from remodel in rosetta_scripts by petrikigor » Mon, 2012-12-03 15:13 |
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8,841 |
by petrikigor Mon, 2014-04-21 06:47 |
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RAbD with N-term，Proline-like ncaa returns segmentation fault during CCDEndsGraftMover by CordycepsLin » Sun, 2022-02-06 19:09 |
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3,749 |
by CordycepsLin Wed, 2022-02-09 19:39 |
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ab initio membrane error (frag9 file...) by almeida » Mon, 2012-07-30 08:53 |
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9,693 |
by rmoretti Tue, 2014-08-12 08:15 |
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loop re-modeling std::out_of_range by rlwoltz » Tue, 2013-03-12 18:11 |
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9,044 |
by smlewis Mon, 2014-04-21 06:47 |
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fix the left part doesn't work by albumns » Wed, 2012-11-07 00:02 |
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7,193 |
by albumns Mon, 2014-04-21 06:47 |
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RosettaDock - Constraints File by edpryor » Wed, 2012-09-19 06:23 |
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12,842 |
by joeg Mon, 2014-04-21 06:47 |
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how to repacking loop while freezing other residues? by jfhuang » Wed, 2012-07-25 06:59 |
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8,945 |
by jfhuang Mon, 2014-04-21 06:47 |
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A problem with "molfile_to_params.py" by Rosettasz » Mon, 2013-08-19 19:35 |
10 |
11,353 |
by egecav Mon, 2021-01-18 05:41 |
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RosettaDNA error by deltag » Fri, 2012-12-07 06:09 |
10 |
9,950 |
by deltag Mon, 2014-04-21 06:47 |
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Questions for "modeling_instructions.pdf" in "Homology or Loop Modelling" by lanselibai » Sun, 2014-09-21 09:02 |
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10,982 |
by lanselibai Tue, 2014-10-07 02:58 |
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fixing disulfides in homolgy modeling by pdbb » Wed, 2013-02-13 11:43 |
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12,155 |
by kamau Mon, 2014-09-22 09:39 |
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Don't know how to extract scores from a RNA de novo silent file. by Basantab » Wed, 2011-11-23 17:27 |
10 |
10,159 |
by smlewis Mon, 2014-04-21 06:47 |
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SEWING and motif file generation by rbjacob » Thu, 2018-07-12 07:28 |
10 |
7,049 |
by zhangying1990 Tue, 2019-06-04 18:04 |
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std::bad_alloc error after changing .xml script? by chrisHKL » Wed, 2020-03-04 11:44 |
10 |
5,739 |
by jadolfbr Thu, 2020-03-05 07:02 |
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Rosetta-Holes Scoring Function by kroberts » Fri, 2011-05-13 14:05 |
11 |
15,012 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to use -cst_fa_file and -relax:constrain_relax_to_native_coords at the same time by Anatol » Thu, 2012-11-29 14:12 |
11 |
10,729 |
by smlewis Mon, 2014-04-21 06:47 |
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Abinitio error: ERROR: Value of inactive option accessed: -in:file:frag9 by rlwoltz » Tue, 2012-09-18 14:04 |
11 |
16,494 |
by RAGHURAMAN Fri, 2014-08-08 02:19 |
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Error while running Enzyme Design by saxen » Fri, 2011-10-21 15:46 |
11 |
11,196 |
by akpole Mon, 2014-04-21 06:47 |
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Should FastRelax be commented out in Calculate_protein_protein_ddg demo? by cossio » Mon, 2016-10-31 12:01 |
11 |
9,684 |
by cossio Mon, 2016-11-21 07:56 |
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XML validation failing by mb0261 » Fri, 2023-04-14 14:53 |
11 |
2,283 |
by mb0261 Mon, 2023-04-17 17:38 |
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-kill_hairpin error by jadolfbr » Wed, 2011-10-05 18:53 |
11 |
17,619 |
by rmoretti Mon, 2015-09-28 15:00 |
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in silico affinity maturation design by jarod » Mon, 2013-05-20 02:07 |
11 |
12,661 |
by jarod Mon, 2014-04-21 06:47 |
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fragment_picker.mpi.linuxgccrelease can't find : libsqlite3.so by starone » Mon, 2016-06-20 19:22 |
11 |
13,739 |
by starone Fri, 2016-06-24 18:29 |
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Where is the RosettaHoles2 executable? by lah435 » Mon, 2012-06-04 15:15 |
11 |
8,917 |
by smlewis Mon, 2014-04-21 06:47 |
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No output pdb files after docking protein and DNA/RNA by yzq » Thu, 2012-10-25 08:23 |
11 |
12,292 |
by rmoretti Fri, 2016-06-17 10:22 |
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ddg_monomer problem by deltag » Wed, 2012-04-04 07:53 |
11 |
12,573 |
by smlewis Mon, 2014-04-21 06:47 |
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fragment picker does not follow dihedral constraints by attesor » Tue, 2016-05-24 23:22 |
12 |
11,077 |
by smlewis Wed, 2016-08-17 07:56 |
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AbinitioRelax usage (3.4) by atruong » Fri, 2012-10-12 13:38 |
12 |
11,375 |
by atruong Mon, 2014-04-21 06:47 |
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Scoring residue vs. organic ligand by almeida » Tue, 2014-04-08 12:18 |
12 |
13,931 |
by rmoretti Thu, 2014-04-24 14:43 |
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Surface Docking Application Crash by dkozuch » Sat, 2017-09-02 18:32 |
12 |
8,925 |
by Anpu Tue, 2018-09-25 19:06 |
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the extracted pdb file by benniu2004 » Fri, 2013-01-04 17:55 |
12 |
14,062 |
by benniu2004 Mon, 2014-04-21 06:47 |
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"score vs RMSD plots" & "cluster models" by lanselibai » Thu, 2014-09-25 06:51 |
12 |
24,903 |
by lanselibai Wed, 2014-10-15 01:54 |
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Segmentation fault (core dumped) in rosetta_scripts.default.linuxgccrelease after blueprint file reading by Corvin » Tue, 2020-06-30 00:36 |
12 |
9,038 |
by Corvin Tue, 2020-11-10 01:22 |
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[SOLVED] swamped memory by fred » Fri, 2011-09-16 08:19 |
13 |
12,525 |
by fred Mon, 2014-04-21 06:47 |
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Camelid antibody (VHH) modelling by Ayoub Ksouri » Tue, 2017-04-04 22:52 |
13 |
10,801 |
by Ayoub Ksouri Wed, 2017-04-19 15:16 |
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ddg_monomer mutations list: How to specify chain ID? by cossio » Tue, 2014-12-09 14:26 |
13 |
17,108 |
by rmoretti Thu, 2016-04-28 16:43 |
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