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Rosetta 3 - Applications
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Rosetta relax problem by jingwei xu » Wed, 2016-03-09 21:41 |
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5,602 |
by jingwei xu Wed, 2016-05-04 23:28 |
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Multistate design on Rosetta - no generations produced by tong » Wed, 2018-06-13 00:36 |
8 |
5,596 |
by smlewis Thu, 2018-06-14 10:26 |
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fixbb with symmetry error by Prasanth Kumar » Sun, 2014-01-26 10:56 |
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5,570 |
by Prasanth Kumar Mon, 2014-04-21 06:48 |
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How to estimate the effect of a mutation on the binding energy? by ltrabuco » Tue, 2011-02-15 08:02 |
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5,563 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Unable to run Rosetta LoopModeling application by BDBorrillo » Tue, 2011-07-19 14:06 |
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5,531 |
by BDBorrillo Mon, 2014-04-21 06:47 |
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score_jd2.mpi.linuxgccrelease failed by fred » Wed, 2014-03-26 13:54 |
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5,511 |
by fred Tue, 2014-04-01 08:24 |
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SymDock for docking only the ligand? by ast » Mon, 2013-06-17 09:53 |
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5,508 |
by rmoretti Mon, 2014-04-21 06:48 |
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How do you use two patches simulataneously with ab initio folding? by smiruthi » Wed, 2011-12-21 15:24 |
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5,487 |
by wangyr Mon, 2014-04-21 06:47 |
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Standalone alanine scanning protocol by exchhattu » Thu, 2011-10-13 19:40 |
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5,486 |
by smlewis Mon, 2014-04-21 06:47 |
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H3 modeling takes 10 days more? by jessye » Fri, 2017-10-27 03:11 |
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5,473 |
by jessye Fri, 2017-11-03 20:15 |
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AbinitioRelax with native fragments by ks » Mon, 2016-09-05 03:03 |
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5,453 |
by ks Mon, 2016-09-12 03:14 |
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Docking flags by AmelieH » Thu, 2014-11-13 08:46 |
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5,447 |
by AmelieH Wed, 2014-11-19 11:26 |
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Does linker modeling exist? by aroop » Wed, 2012-02-22 07:34 |
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5,423 |
by smlewis Mon, 2014-04-21 06:47 |
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Adding bridged water interaction in constraint file by purvi24 » Thu, 2019-02-28 07:01 |
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5,414 |
by purvi24 Mon, 2019-03-11 06:43 |
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Multiple ligands in enzyme design application by yogeshkd » Mon, 2013-02-11 10:13 |
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5,404 |
by yogeshkd Mon, 2014-04-21 06:47 |
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enzyme design and output_matchres_only by petrikigor » Wed, 2012-10-24 18:45 |
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5,388 |
by petrikigor Mon, 2014-04-21 06:47 |
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fixbb algorithm reference? by tylerborrman » Wed, 2015-09-23 10:20 |
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5,376 |
by tylerborrman Mon, 2015-09-28 09:30 |
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Loop modelling before peptide docking by wsgosal » Tue, 2013-10-01 07:24 |
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5,352 |
by wsgosal Mon, 2014-04-21 06:48 |
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Rebuilding the structure from unknown residues by sushreet » Mon, 2016-06-27 09:32 |
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5,350 |
by rmoretti Tue, 2016-07-12 09:35 |
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Error during single state design by sujigeorge1979 » Sat, 2020-01-18 00:37 |
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5,328 |
by rmoretti Thu, 2020-01-30 15:42 |
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Is there a way to restrict memory usage of ddg_monomer? by cossio » Fri, 2015-01-30 14:35 |
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5,323 |
by rmoretti Mon, 2015-02-09 12:04 |
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Why is proline hydroxylated？ by kwonglynn » Tue, 2013-06-25 02:38 |
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5,303 |
by rmoretti Mon, 2014-04-21 06:48 |
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running in MPI mode and multiple scores per output PDB file? by dantimatter » Wed, 2019-10-30 09:42 |
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5,291 |
by dantimatter Wed, 2019-11-06 09:51 |
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how to do alanine scanning by xinmiaohe » Mon, 2019-08-26 17:40 |
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5,279 |
by xinmiaohe Fri, 2019-10-04 08:54 |
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Backrub Params Files by protos_heis » Tue, 2012-09-18 06:15 |
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5,274 |
by protos_heis Mon, 2014-04-21 06:47 |
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make fragment by zadie1118 » Thu, 2012-08-30 07:45 |
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5,272 |
by smlewis Mon, 2014-04-21 06:47 |
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"Problem in calculating overlap between atoms" error occurred in Point Mutant Scan application by xfliu » Thu, 2012-06-21 09:07 |
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5,205 |
by smlewis Mon, 2014-04-21 06:47 |
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minirosetta: weird behavior by fred » Wed, 2014-01-22 05:57 |
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5,203 |
by fred Mon, 2014-04-21 06:48 |
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ddG_monomer by cott1117 » Thu, 2014-06-12 09:53 |
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5,202 |
by rmoretti Wed, 2014-07-02 16:55 |
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Syntax for python-based (.py) command line on cluster by lanselibai » Fri, 2014-11-14 09:32 |
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5,202 |
by lanselibai Thu, 2014-11-20 02:15 |
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Missing common atom definitions in constraints by ic3reyes » Sat, 2011-06-11 13:09 |
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5,199 |
by smlewis Mon, 2014-04-21 06:47 |
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Using Rosetta Docking for nucleic acids by Adrien Guilhot » Thu, 2011-04-28 06:16 |
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5,198 |
by Adrien Guilhot Mon, 2014-04-21 06:47 |
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Error while running RosettaLigand by Ryhon Wang » Tue, 2013-07-30 02:51 |
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5,187 |
by Ryhon Wang Mon, 2014-04-21 06:48 |
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molfile to params polymer python errors by tsztain » Sun, 2018-12-02 15:38 |
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5,183 |
by tsztain Tue, 2018-12-11 13:41 |
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ligand_docking_analysis by Prasanth Kumar » Thu, 2013-05-09 23:51 |
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5,145 |
by rmoretti Mon, 2014-04-21 06:47 |
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RosettaCM -weights, fragments and relax by jsv » Tue, 2017-05-09 10:20 |
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5,111 |
by rmoretti Thu, 2017-06-01 08:52 |
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extract_pdbs fails to open silent file when -auto_setup_metals enabled by attesor » Thu, 2015-01-15 03:22 |
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5,106 |
by attesor Tue, 2015-01-27 02:20 |
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pair energies across interface by irini » Fri, 2012-02-10 09:17 |
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5,099 |
by Anonymous Mon, 2014-04-21 06:47 |
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Disulfide prediction from primary sequence by zcrook » Wed, 2014-11-12 14:44 |
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5,095 |
by zcrook Tue, 2014-11-25 10:27 |
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clean_pdb.py of Rosetta VS cleanATOM of PyRosetta by lanselibai » Wed, 2014-09-24 03:02 |
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5,090 |
by lanselibai Wed, 2014-09-24 13:21 |
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fa_plane enregy term in scoring weights by ytao » Fri, 2012-11-30 20:25 |
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5,082 |
by smlewis Mon, 2014-04-21 06:47 |
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RosettaAntibody by mpendleton » Mon, 2011-04-04 10:27 |
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5,081 |
by jianqing Mon, 2014-04-21 06:47 |
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ddg_monomer conformational search... by yperez » Wed, 2012-05-09 11:10 |
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5,078 |
by yperez Mon, 2014-04-21 06:47 |
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Homodimer interface design by petrikigor » Fri, 2012-11-16 10:57 |
3 |
5,073 |
by rmoretti Mon, 2014-04-21 06:47 |
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Unable to locate the "compute_ddg.py" file and running the RosettaMP protocol by Sajjad » Mon, 2022-11-28 14:09 |
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5,064 |
by Sajjad Wed, 2022-11-30 11:50 |
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Antibody modeling by Maryam_tabasinezhad » Fri, 2015-09-04 11:00 |
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5,061 |
by rmoretti Wed, 2015-09-09 12:08 |
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a question about ligand docking by yzhou » Wed, 2012-05-30 18:57 |
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5,045 |
by yzhou Mon, 2014-04-21 06:47 |
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make_rot_lib issue by jarek » Thu, 2013-04-11 08:21 |
4 |
5,026 |
by smlewis Mon, 2014-04-21 06:47 |
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jd2 quits before reaching -nstruct # in roseta_scripts.mpi.linuxgccrelease by fradom » Mon, 2017-11-27 02:55 |
6 |
5,023 |
by fradom Tue, 2017-12-05 01:52 |
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fixbb and ncaa's by jarek » Thu, 2012-11-08 04:55 |
4 |
5,022 |
by jcminerlanl Thu, 2017-12-21 10:13 |
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InterfaceAnalyzer problem by almeida » Mon, 2014-03-03 14:56 |
3 |
5,019 |
by smlewis Fri, 2014-03-07 14:09 |
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Abrelax - Dunbrack02.lib.bin missing by omirus » Sun, 2011-09-18 06:30 |
3 |
5,014 |
by smlewis Mon, 2014-04-21 06:47 |
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How to output all iteration structures from ddg_monomer? by cossio » Fri, 2014-12-26 13:40 |
4 |
4,987 |
by cossio Mon, 2015-01-19 07:10 |
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Ligand Docking with Rosetta Scripts memory problem by Swillard » Thu, 2017-08-17 14:59 |
5 |
4,982 |
by rmoretti Mon, 2018-11-12 14:31 |
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assymetric dymer modelling with comparative and ab initio by marcia » Mon, 2013-10-14 08:33 |
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4,953 |
by rmoretti Mon, 2014-04-21 06:48 |
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[TopologyBroker Exception]: BBTorsion at pos 468unitialized...unclaimed by tevang » Wed, 2013-04-10 15:07 |
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4,946 |
by rmoretti Mon, 2014-04-21 06:47 |
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RosettaCM Tutorials by smathersc » Wed, 2017-01-11 15:59 |
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4,900 |
by rmoretti Thu, 2017-01-19 09:11 |
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modeling an extracellular loop of a transmembrane protein by Hothman » Fri, 2016-08-12 06:16 |
5 |
4,892 |
by rmoretti Mon, 2016-09-05 10:59 |
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Loop modeling - the appropriate way to model a peptide insertion? by xding » Thu, 2018-08-02 15:30 |
6 |
4,889 |
by smlewis Wed, 2018-08-08 15:48 |
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Ligand docking and protein design of an internal pocket in a protein with a cofactor by oerbilgin » Mon, 2011-06-20 13:55 |
2 |
4,880 |
by frichter Mon, 2014-04-21 06:47 |
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favor native residue in fixBB design by ast » Mon, 2012-12-10 06:00 |
4 |
4,878 |
by smlewis Mon, 2014-04-21 06:47 |
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Re: Glutamic acid protonation by bharat_46010 » Fri, 2017-02-10 03:08 |
4 |
4,868 |
by rmoretti Mon, 2017-02-20 08:09 |
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sam.predict-2nd for make_fragments.pl script by sumukh21 » Thu, 2011-02-17 12:29 |
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4,864 |
by fukamitka Mon, 2014-04-21 06:47 |
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Problems with always_constrained_relax_script by wsgosal » Wed, 2013-05-29 04:39 |
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4,823 |
by rmoretti Mon, 2014-04-21 06:47 |
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ReplicaDock 2.0 Native vs Input Structure Flags Confusion by katherinemccoy » Tue, 2022-12-27 06:42 |
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4,822 |
by katherinemccoy Tue, 2023-02-28 18:19 |
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FlexPepDocking with GDP-bound protein by LI » Sun, 2011-06-12 20:02 |
3 |
4,819 |
by rmoretti Mon, 2014-04-21 06:47 |
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Can I assume the outputs from different runs are from a same batch? by lanselibai » Mon, 2014-11-03 06:34 |
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4,814 |
by lanselibai Mon, 2014-11-03 13:15 |
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cyclization_type flag in simple_cycpep_predict by Florent Langenfeld » Thu, 2018-01-04 09:22 |
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4,810 |
by Florent Langenfeld Tue, 2018-03-27 11:44 |
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Rosetta ScriptsFeatures Reporter issue by David Weis » Sun, 2017-03-12 08:19 |
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4,809 |
by David Weis Mon, 2017-03-13 10:59 |
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Different scoring applications (score vs score_aln vs score_jd2, etc.)? by cossio » Fri, 2014-12-26 07:19 |
3 |
4,800 |
by Patrícia Antunes Fri, 2023-01-20 11:55 |
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Local docking: "manually place the two proteins facing each other" ? by mdeklotz » Fri, 2018-07-20 10:24 |
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4,793 |
by dfcoelho Tue, 2018-10-16 09:05 |
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Symmetric Minimization by aroop » Mon, 2012-12-17 11:45 |
5 |
4,758 |
by aroop Mon, 2014-04-21 06:47 |
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Positive scores with SymmDock in helical symmetry by kxiao » Tue, 2014-02-11 07:37 |
4 |
4,756 |
by kxiao Thu, 2014-06-05 08:37 |
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Error when running cluster by aloshbau » Wed, 2013-05-01 20:45 |
3 |
4,750 |
by rmoretti Mon, 2014-04-21 06:47 |
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Ligand atom RMSD calculation by lkrathn » Wed, 2013-08-14 21:25 |
2 |
4,742 |
by lkrathn Mon, 2014-04-21 06:48 |
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Warning messages in Interface analyzer output by Pernille » Wed, 2015-03-25 00:53 |
4 |
4,655 |
by rmoretti Tue, 2015-03-31 08:20 |
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Homology Modelling with cofactors by Derek Smith » Thu, 2015-07-09 08:24 |
3 |
4,647 |
by Derek Smith Wed, 2016-02-03 05:47 |
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Syntax for the alignment file in "minirosetta comparative modeling" by lanselibai » Thu, 2014-10-16 15:29 |
3 |
4,642 |
by lanselibai Thu, 2014-10-23 03:26 |
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Docking structures with ligands in cryo-EM maps by galushin » Wed, 2012-07-11 12:40 |
1 |
4,636 |
by jadolfbr Mon, 2014-04-21 06:47 |
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the meaning of total_score in docking by libai2098 » Mon, 2011-03-21 05:46 |
2 |
4,634 |
by libai2098 Mon, 2014-04-21 06:47 |
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terminal amino acids of gap has incomplete valency by malkeet.singh » Wed, 2017-11-29 05:20 |
6 |
4,632 |
by rmoretti Fri, 2017-12-01 12:05 |
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Rosetta DNA - Protein-DNA scoring function and binding energy by tanoramb » Tue, 2012-05-08 14:00 |
1 |
4,618 |
by smlewis Mon, 2014-04-21 06:47 |
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ERROR: no fragment to compute secondary structure by byin » Sun, 2011-08-07 23:55 |
3 |
4,608 |
by smlewis Mon, 2014-04-21 06:47 |
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Error in a new docking by jrcf » Wed, 2017-05-17 19:26 |
2 |
4,591 |
by tingting Tue, 2022-03-15 23:55 |
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Discrepancy between the total pose energy and sum of per residue energies by vijayan » Tue, 2013-07-02 07:24 |
3 |
4,576 |
by rmoretti Mon, 2014-04-21 06:48 |
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ligand dock question by sacch » Sun, 2012-05-20 19:49 |
4 |
4,569 |
by sacch Mon, 2014-04-21 06:47 |
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InterfaceAnalyzer dSasa calculation by mintseris » Wed, 2015-09-02 09:43 |
2 |
4,561 |
by jadolfbr Thu, 2015-09-03 16:18 |
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ddg monomer vs pmut scan by dave » Tue, 2014-03-04 10:18 |
3 |
4,554 |
by smlewis Fri, 2014-03-07 13:02 |
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Protein-DNA Docking using RosettaScripts? by brspurri » Fri, 2013-06-07 09:06 |
1 |
4,552 |
by rmoretti Mon, 2014-04-21 06:48 |
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conway2016 correction on beta-nov15? by attesor » Wed, 2017-03-15 05:26 |
5 |
4,539 |
by attesor Thu, 2017-03-16 01:21 |
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homology modeling- Error: length mismatch between sequence and alignment. by pdbb » Mon, 2012-10-01 07:57 |
2 |
4,500 |
by pdbb Mon, 2014-04-21 06:47 |
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fragment_picker with fasta only by gw » Tue, 2011-11-15 13:20 |
3 |
4,499 |
by gw Mon, 2014-04-21 06:47 |
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cluster.mpi running in MPI mode? by sacch » Fri, 2011-11-18 23:30 |
2 |
4,498 |
by sacch Mon, 2014-04-21 06:47 |
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Pepspec Errors running 3.4 by rrphenix » Tue, 2013-05-28 12:08 |
4 |
4,473 |
by rmoretti Mon, 2014-04-21 06:47 |
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AbinitioRelax Disulfide Bonds are not being retained by brspurri » Wed, 2011-09-28 13:55 |
1 |
4,472 |
by parmef Mon, 2014-04-21 06:47 |
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pmut_scan does not produce log file by fglaser » Wed, 2013-10-16 07:25 |
3 |
4,469 |
by matteoferla Tue, 2018-10-30 02:54 |
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Snugdock_input by luicui » Wed, 2017-01-18 16:48 |
5 |
4,449 |
by smlewis Fri, 2017-01-20 08:14 |
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comparative modeling of protein-ligand complex by tevang » Mon, 2013-09-09 09:06 |
3 |
4,436 |
by rmoretti Mon, 2014-04-21 06:48 |
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The confussion about an example in tutorial in Rosetta Virtual Workshop 2020 by ldx022 » Tue, 2022-11-29 04:58 |
3 |
4,435 |
by ldx022 Tue, 2022-11-29 08:38 |
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Error when running Remodel with EnzDes constraint file to extend c-terminal by Jeffrey_Chen » Thu, 2017-01-19 06:20 |
4 |
4,426 |
by dfcoelho Tue, 2017-10-17 11:52 |
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