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Baker

Institute: 
University of Washington
Machine name: 
baker
PI NCBI name: 
Baker D
PI email: 
dabaker@u.washington.edu

Improvement in protein functional site prediction by distinguishing structural and functional constraints on protein family evolution using computational design

Authors: 
Cheng, G., Qian, B., Samudrala, R. and Baker, D.
Volume: 
33
Link to Article: 
Year: 
2005
Reference: 
Nucleic Acids Res
Pages: 
5861-5867
Lab: 
Publication Type: 
Publication Subject: 

Prediction of CASP6 structures using automated Robetta protocols

Authors: 
Chivian, D., Kim, D. E., Malmstrom, L., Schonbrun, J., Rohl, C. A. and Baker, D.
Volume: 
61 Suppl 7
Link to Article: 
Year: 
2005
Reference: 
Proteins
Pages: 
157-166
Lab: 
Publication Type: 
Publication Subject: 

A "solvated rotamer" approach to modeling water-mediated hydrogen bonds at protein-protein interfaces

Authors: 
Jiang, L., Kuhlman, B., Kortemme, T. and Baker, D.
Volume: 
58
Link to Article: 
Year: 
2005
Reference: 
Proteins
Pages: 
893-904
Lab: 
Publication Type: 
Publication Subject: 

Automated prediction of domain boundaries in CASP6 targets using Ginzu and RosettaDOM

Authors: 
Kim, D. E., Chivian, D., Malmstrom, L. and Baker, D.
Volume: 
61 Suppl 7
Link to Article: 
Year: 
2005
Reference: 
Proteins
Pages: 
193-200
Lab: 
Publication Type: 
Publication Subject: 

The fumarate sensor DcuS: progress in rapid protein fold elucidation by combining protein structure prediction methods with NMR spectroscopy

Authors: 
Meiler, J. and Baker, D.
Volume: 
173
Link to Article: 
Year: 
2005
Reference: 
J Magn Reson
Pages: 
310-316
Lab: 
Publication Type: 
Publication Subject: 

Progress and challenges in high-resolution refinement of protein structure models

Authors: 
Misura, K. M. and Baker, D.
Volume: 
59
Link to Article: 
Year: 
2005
Reference: 
Proteins
Pages: 
15-29
Lab: 
Publication Type: 
Publication Subject: 

Recapitulation of protein family divergence using flexible backbone protein design

Authors: 
Saunders, C. T. and Baker, D.
Volume: 
346
Link to Article: 
Year: 
2005
Reference: 
J Mol Biol
Pages: 
631-644
Lab: 
Publication Type: 
Publication Subject: 

Progress in protein-protein docking: atomic resolution predictions in the CAPRI experiment using RosettaDock with an improved treatment of side-chain flexibility

Authors: 
Schueler-Furman, O., Wang, C. and Baker, D.
Volume: 
60
Link to Article: 
Year: 
2005
Reference: 
Proteins
Pages: 
187-194
Lab: 
Publication Type: 
Publication Subject: 

Progress in modeling of protein structures and interactions

Authors: 
Schueler-Furman, O., Wang, C., Bradley, P., Misura, K. and Baker, D.
Volume: 
310
Link to Article: 
Year: 
2005
Reference: 
Science
Pages: 
638-642
Lab: 
Publication Type: 
Publication Subject: 

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