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Baker

Institute:

University of Washington

Machine name:

baker

PI NCBI name:

Baker D

PI email:

dabaker@u.washington.edu

Multipass membrane protein structure prediction using Rosetta

Submitted by Anonymous on Fri, 2010-11-12 04:39

Authors:

Yarov-Yarovoy, V., Schonbrun, J. and Baker, D.

Volume:

62

Link to Article:

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...

Year:

2006

Reference:

Proteins

Pages:

1010-1025

Lab:

Publication Type:

Publication Subject:

Other Rosetta Papers

Read more about Multipass membrane protein structure prediction using Rosetta

New algorithms and an in silico benchmark for computational enzyme design

Submitted by Anonymous on Fri, 2010-11-12 04:39

Authors:

Zanghellini, A., Jiang, L., Wollacott, A. M., Cheng, G., Meiler, J., Althoff, E. A., Rothlisberger, D. and Baker, D.

Volume:

15

Link to Article:

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...

Year:

2006

Reference:

Protein Sci

Pages:

2785-2794

Lab:

Publication Type:

Publication Subject:

Other Rosetta Papers

Read more about New algorithms and an in silico benchmark for computational enzyme design

Prediction of the structure of symmetrical protein assemblies

Submitted by Anonymous on Fri, 2010-11-12 04:39

Authors:

Andre, I., Bradley, P., Wang, C. and Baker, D.

Volume:

104

Link to Article:

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...

Year:

2007

Reference:

Proc Natl Acad Sci U S A

Pages:

17656-17661

Lab:

Publication Type:

Publication Subject:

Other Rosetta Papers

Read more about Prediction of the structure of symmetrical protein assemblies

Toward high-resolution prediction and design of transmembrane helical protein structures

Submitted by Anonymous on Fri, 2010-11-12 04:39

Authors:

Barth, P., Schonbrun, J. and Baker, D.

Volume:

104

Link to Article:

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...

Year:

2007

Reference:

Proc Natl Acad Sci U S A

Pages:

15682-15687

Lab:

Publication Type:

Publication Subject:

Other Rosetta Papers

Read more about Toward high-resolution prediction and design of transmembrane helical protein structures

High-resolution structural and thermodynamic analysis of extreme stabilization of human procarboxypeptidase by computational protein design

Submitted by Anonymous on Fri, 2010-11-12 04:39

Authors:

Dantas, G., Corrent, C., Reichow, S. L., Havranek, J. J., Eletr, Z. M., Isern, N. G., Kuhlman, B., Varani, G., Merritt, E. A. and Baker, D.

Volume:

366

Link to Article:

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...

Year:

2007

Reference:

J Mol Biol

Pages:

1209-1221

Lab:

Publication Type:

Publication Subject:

Other Rosetta Papers

Read more about High-resolution structural and thermodynamic analysis of extreme stabilization of human procarboxypeptidase by computational protein design

Automated de novo prediction of native-like RNA tertiary structures

Submitted by Anonymous on Fri, 2010-11-12 04:39

Authors:

Das, R. and Baker, D.

Volume:

104

Link to Article:

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...

Year:

2007

Reference:

Proc Natl Acad Sci U S A

Pages:

14664-14669

Lab:

Publication Type:

Publication Subject:

Other Rosetta Papers

Read more about Automated de novo prediction of native-like RNA tertiary structures

Structure prediction for CASP7 targets using extensive all-atom refinement with Rosetta@home

Submitted by Anonymous on Fri, 2010-11-12 04:39

Authors:

Das, R., Qian, B., Raman, S., Vernon, R., Thompson, J., Bradley, P., Khare, S., Tyka, M. D., Bhat, D., Chivian, D., Kim, D. E., Sheffler, W. H., Malmstrom, L., Wollacott, A. M., Wang, C., Andre, I. and Baker, D.

Volume:

69 Suppl 8

Link to Article:

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...

Year:

2007

Reference:

Proteins

Pages:

118-128

Lab:

Publication Type:

Publication Subject:

Other Rosetta Papers

Read more about Structure prediction for CASP7 targets using extensive all-atom refinement with Rosetta@home

Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology

Submitted by Anonymous on Fri, 2010-11-12 04:39

Authors:

Malmstrom, L., Riffle, M., Strauss, C. E., Chivian, D., Davis, T. N., Bonneau, R. and Baker, D.

Volume:

5

Link to Article:

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...

Year:

2007

Reference:

PLoS Biol

Pages:

e76

Lab:

Publication Type:

Publication Subject:

Other Rosetta Papers

Read more about Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology

High-resolution structure prediction and the crystallographic phase problem

Submitted by Anonymous on Fri, 2010-11-12 04:39

Authors:

Qian, B., Raman, S., Das, R., Bradley, P., McCoy, A. J., Read, R. J. and Baker, D.

Volume:

450

Link to Article:

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...

Year:

2007

Reference:

Nature

Pages:

259-264

Lab:

Publication Type:

Publication Subject:

Other Rosetta Papers

Read more about High-resolution structure prediction and the crystallographic phase problem

Dissecting muscle and neuronal disorders in a Drosophila model of muscular dystrophy

Submitted by Anonymous on Fri, 2010-11-12 04:39

Authors:

Shcherbata, H. R., Yatsenko, A. S., Patterson, L., Sood, V. D., Nudel, U., Yaffe, D., Baker, D. and Ruohola-Baker, H.

Volume:

26

Link to Article:

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...

Year:

2007

Reference:

EMBO J

Pages:

481-493

Lab:

Publication Type:

Publication Subject:

Other Rosetta Papers

Read more about Dissecting muscle and neuronal disorders in a Drosophila model of muscular dystrophy

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