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Baker

Institute: 
University of Washington
Machine name: 
baker
PI NCBI name: 
Baker D
PI email: 
dabaker@u.washington.edu

Alteration of enzyme specificity by computational loop remodeling and design

Authors: 
Murphy, P. M., Bolduc, J. M., Gallaher, J. L., Stoddard, B. L. and Baker, D.
Volume: 
106
Link to Article: 
Year: 
2009
Reference: 
Proc Natl Acad Sci U S A
Pages: 
9215-9220
Lab: 
Publication Type: 
Publication Subject: 

Structure prediction for CASP8 with all-atom refinement using Rosetta

Authors: 
Raman, S., Vernon, R., Thompson, J., Tyka, M., Sadreyev, R., Pei, J., Kim, D., Kellogg, E., DiMaio, F., Lange, O., Kinch, L., Sheffler, W., Kim, B. H., Das, R., Grishin, N. V. and Baker, D.
Volume: 
77 Suppl 9
Link to Article: 
Year: 
2009
Reference: 
Proteins
Pages: 
89-99
Lab: 
Publication Type: 
Publication Subject: 

RosettaHoles: rapid assessment of protein core packing for structure prediction, refinement, design, and validation

Authors: 
Sheffler, W. and Baker, D.
Volume: 
18
Link to Article: 
Year: 
2009
Reference: 
Protein Sci
Pages: 
229-239
Lab: 
Publication Type: 
Publication Subject: 

Exploitation of binding energy for catalysis and design

Authors: 
Thyme, S. B., Jarjour, J., Takeuchi, R., Havranek, J. J., Ashworth, J., Scharenberg, A. M., Stoddard, B. L. and Baker, D.
Volume: 
461
Link to Article: 
Year: 
2009
Reference: 
Nature
Pages: 
1300-1304
Lab: 
Publication Type: 
Publication Subject: 

Exploitation of binding energy for catalysis and design

Authors: 
Thyme, S. B., Jarjour, J., Takeuchi, R., Havranek, J. J., Ashworth, J., Scharenberg, A. M., Stoddard, B. L. and Baker, D.
Volume: 
461
Link to Article: 
Year: 
2009
Reference: 
Nature
Pages: 
1300-1304
Lab: 
Publication Type: 
Publication Subject: 

Accurate automated protein NMR structure determination using unassigned NOESY data

Authors: 
Raman, S., Huang, Y. J., Mao, B., Rossi, P., Aramini, J. M., Liu, G., Montelione, G. T. and Baker, D.
Volume: 
132
Link to Article: 
Year: 
2010
Reference: 
J Am Chem Soc
Pages: 
202-207
Lab: 
Publication Type: 
Publication Subject: 

NMR structure determination for larger proteins using backbone-only data

Authors: 
Raman, S., Lange, O. F., Rossi, P., Tyka, M., Wang, X., Aramini, J., Liu, G., Ramelot, T. A., Eletsky, A., Szyperski, T., Kennedy, M. A., Prestegard, J., Montelione, G. T. and Baker, D.
Volume: 
327
Link to Article: 
Year: 
2010
Reference: 
Science
Pages: 
1014-1018
Lab: 
Publication Type: 
Publication Subject: 

Prediction of structures of zinc-binding proteins through explicit modeling of metal coordination geometry

Authors: 
Wang, C., Vernon, R., Lange, O., Tyka, M. and Baker, D.
Volume: 
19
Link to Article: 
Year: 
2010
Reference: 
Protein Sci
Pages: 
494-506
Lab: 
Publication Type: 
Publication Subject: 

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