Dear Rosetta,
I'm trying to calculate maxsub values between a native PDB structure and a set of ab-initio predicted decoy structures using score.linuxgccrelease. According to the manual score.linuxgccrelease should print out maxsub if a native structure is provided. However, running the following command:
score.linuxgccrelease -in:file:s S_00000006_58.pdb -native 1ctfA.pdb -score_app::superimpose_to_native
returns only a RMSD value:
SCORE: score fa_atr fa_rep fa_sol fa_intra_rep pro_close fa_pair hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_ss_dst dslf_cs_ang dslf_ss_dih dslf_ca_dih rama omega fa_dun p_aa_pp
ref irms rms description
SCORE: -233.645 -397.017 41.869 181.884 0.780 0.489 -10.109 -56.097 -4.889 -3.594 -3.563 0.000 0.000 0.000 0.000 -8.236 7.630 48.083 -8.254 -
2.620 0.000 10.396 S_00000006_58_0001
Is there any other way how I could get to my maxsub values using ROSETTA.
Best
Abdullah