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Rosetta 3 - General

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:16
0
4,382 by admin
Fri, 2015-09-04 16:17
Normal topic Using logic in resfile, Rosetta Scripts
by tsztain » Wed, 2017-03-22 13:50
1
30 by smlewis
Wed, 2017-03-22 14:02
Normal topic Error running snugdock
by SenyorDrew » Tue, 2017-03-14 10:00
4
90 by SenyorDrew
Thu, 2017-03-16 08:08
Normal topic [dev] not seeing energy in pose row for new energy term in design
by ipetrik_ambry » Fri, 2017-03-03 13:16
1
62 by ipetrik_ambry
Tue, 2017-03-14 14:09
Normal topic Error while trying to run r_noe_assign
by sn » Mon, 2017-03-13 11:40
0
35 by sn
Mon, 2017-03-13 11:40
Normal topic Data Check for a newb
by ac.research » Sun, 2017-03-12 23:42
1
47 by rmoretti
Mon, 2017-03-13 08:57
Normal topic constraints
by lah435 » Sun, 2017-03-12 03:25
1
36 by smlewis
Mon, 2017-03-13 08:16
Normal topic scoring with omega energy term
by SergeyP » Thu, 2017-03-09 12:03
2
64 by SergeyP
Fri, 2017-03-10 11:16
Normal topic Rosetta Antibody Prepack - Problem HL_A vs. LH_A
by cannond » Fri, 2017-03-03 02:41
5
123 by cannond
Wed, 2017-03-08 03:00
Normal topic combine_silent ERROR: unknown atom_name: CYS SG
by freedman » Mon, 2017-03-06 10:56
5
84 by freedman
Mon, 2017-03-06 13:24
Normal topic Looking for collaboration.
by ac.research » Mon, 2017-03-06 04:54
1
47 by rmoretti
Mon, 2017-03-06 08:37
Normal topic [dev] Using h-bonding values in new energy term
by ipetrik_ambry » Wed, 2017-03-01 11:33
4
127 by ipetrik_ambry
Thu, 2017-03-02 15:35
Normal topic Typical relax options not applied in relax.mpi.linuxiccrelease??
by David Weis » Mon, 2017-02-27 11:35
3
82 by rmoretti
Wed, 2017-03-01 12:55
Normal topic Antibody Homology Modeling - Antibody vs. Antibody_legacy
by cannond » Tue, 2017-02-14 05:53
4
139 by cannond
Wed, 2017-03-01 08:05
Normal topic Antibody homology modeling fails after blastp
by sunhwan » Sat, 2017-02-18 11:25
7
199 by sunhwan
Mon, 2017-02-27 11:02
Hot topic protein design question
by bo » Fri, 2012-08-24 10:41
32
7,644 by ac.research
Sat, 2017-02-11 07:33
Normal topic Robetta nstruct number
by ac.research » Tue, 2017-01-31 14:27
1
87 by rmoretti
Thu, 2017-02-02 08:52
Normal topic Does the fold count reset if abinitio is restarted?
by burkheadlab » Mon, 2011-06-13 11:39
10
2,021 by rmoretti
Thu, 2017-02-02 08:32
Normal topic ETABLE constraint function type
by allan.ferrari » Tue, 2017-01-10 08:01
8
343 by smlewis
Sun, 2017-01-15 18:14
Normal topic Different weights in the constraints for each stage of AbinitioRelax
by allan.ferrari » Sun, 2017-01-15 04:35
2
116 by smlewis
Sun, 2017-01-15 18:10
Normal topic Error with non-canonical amino acid in SnugDock.
by sk0319 » Thu, 2016-12-29 16:12
8
312 by sk0319
Wed, 2017-01-11 10:52
Normal topic Rotamer Library Generation in Rosetta3
by jcminerlanl » Wed, 2016-11-30 07:34
3
230 by sk0319
Thu, 2017-01-05 17:07
Normal topic distances definition in course-grained (centroid mode) steps
by allan.ferrari » Tue, 2017-01-03 05:15
6
231 by allan.ferrari
Tue, 2017-01-03 11:15
Normal topic relax - P6G molecule
by allan.ferrari » Wed, 2016-11-30 05:01
3
192 by allan.ferrari
Tue, 2017-01-03 05:02
Normal topic Why are all source codes .gz and not .tgz
by jasnyderjr » Tue, 2016-12-20 21:23
12
500 by smlewis
Thu, 2016-12-22 13:11
Normal topic General protein-protein docking when no info. on structure is availble
by jasnyderjr » Fri, 2016-12-09 04:55
3
269 by smlewis
Tue, 2016-12-20 10:40
Normal topic rosetta_scripts_BOGUS coords warning message
by Karol » Tue, 2016-12-13 02:35
5
318 by Karol
Thu, 2016-12-15 01:35
Normal topic dG_separated threshold for identifying non-binding peptides with InterfaceAnalyzer.
by jyotisutar9 » Thu, 2016-12-01 00:39
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319 by jyotisutar9
Wed, 2016-12-14 09:39
Normal topic Error using FilterScan with rosettascripts
by SenyorDrew » Tue, 2016-12-13 14:29
0
77 by SenyorDrew
Tue, 2016-12-13 14:29
Normal topic Calibur-linux binary or source code availability?
by jasnyderjr » Sat, 2016-12-10 23:36
2
162 by jadolfbr
Sun, 2016-12-11 10:53
Normal topic lysine-aspartate isopeptide bond
by matteoferla » Tue, 2016-11-01 10:54
6
468 by matteoferla
Thu, 2016-11-17 02:02
Normal topic span and frags filefor multichain transmembrane protein
by zhiguang » Wed, 2016-10-26 13:28
4
308 by zhiguang
Tue, 2016-11-15 12:27
Normal topic Partial homology modeling in Rosetta
by al614 » Mon, 2016-10-31 12:30
1
146 by rmoretti
Mon, 2016-11-14 15:12
Normal topic Errors Rosetta symm refine
by ms4392 » Fri, 2016-10-21 13:56
1
154 by rmoretti
Mon, 2016-11-14 14:26
Normal topic DomainAssembly Mover with constraints (using RosettaScripts)
by resiros » Wed, 2016-09-21 11:19
3
337 by rmoretti
Mon, 2016-11-14 14:21
Normal topic Ligand Docking with Orphan GPCR
by marsaa » Thu, 2016-10-13 07:45
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221 by rmoretti
Fri, 2016-10-14 16:43
Normal topic "abinitio" with mpi
by al614 » Wed, 2016-10-12 12:17
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204 by rmoretti
Fri, 2016-10-14 15:46
Normal topic Histidine protonation
by DmitriiN » Mon, 2016-09-26 13:15
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1,002 by rmoretti
Fri, 2016-10-14 14:08
Normal topic How to transform a pose from symmetric into non-symmetric?
by msardejani » Tue, 2016-10-04 16:55
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232 by msardejani
Wed, 2016-10-05 10:53
Normal topic Rosetta remodel on intel Xeon Phi
by pablogalazdavison » Wed, 2016-09-14 15:35
3
287 by pablogalazdavison
Thu, 2016-09-15 16:36
Normal topic symmetric design without symmetrizing the structure
by sdh_h » Tue, 2016-09-13 05:49
1
193 by rmoretti
Tue, 2016-09-13 07:41
Normal topic restrain multiple portions of proteins with MinMover
by Karol » Wed, 2016-09-07 08:29
4
418 by rmoretti
Thu, 2016-09-08 10:56
Normal topic Negative fa_rep on ddG ?
by LiorZ » Thu, 2016-09-08 07:44
1
183 by rmoretti
Thu, 2016-09-08 07:56
Normal topic dock & design
by sdh_h » Fri, 2016-09-02 03:07
1
214 by rmoretti
Mon, 2016-09-05 09:39
Normal topic Conversion from Dihedral angle representation to Cartesian representation
by rodrigo.faccioli » Sat, 2012-02-25 11:57
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10,703 by charlie.strauss
Fri, 2016-09-02 10:08
Normal topic Remodel introduces clashes when stitching
by achambe » Thu, 2016-08-25 17:51
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188 by possu
Tue, 2016-08-30 16:57
Normal topic BridgeChainsMover
by msardejani » Sun, 2016-08-07 17:32
5
525 by smlewis
Tue, 2016-08-30 13:47
Normal topic Cryo-EM: problem with RosettaCM using multiple template models as input
by Karol » Mon, 2016-08-29 05:26
0
169 by Karol
Mon, 2016-08-29 05:27
Normal topic sequence_tolerance is very slow when -ms:num_packs > 1
by coomteng@gmail.com » Thu, 2016-08-25 13:17
3
291 by coomteng@gmail.com
Fri, 2016-08-26 00:01
Normal topic HBNetStapleInterface
by sdh_h » Wed, 2016-08-24 03:30
1
181 by smlewis
Wed, 2016-08-24 07:23
Normal topic Difficulties with Protein Docking using Harmonic Restraints
by Parker.deWaal » Fri, 2016-08-19 11:23
1
209 by smlewis
Mon, 2016-08-22 10:39
Normal topic Question about homology modelling
by DmitriiN » Sun, 2016-08-21 13:44
3
347 by smlewis
Mon, 2016-08-22 10:28
Normal topic Is the packer aware of non canonical amino acids?
by krdav » Tue, 2016-08-16 08:16
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649 by krdav
Wed, 2016-08-17 12:57
Normal topic "Illegal Instruction" for particular Movers/Filters
by Jhreed » Thu, 2016-08-11 12:59
1
231 by smlewis
Thu, 2016-08-11 13:16
Normal topic Error using pHDock
by SenyorDrew » Thu, 2016-08-11 05:56
0
199 by SenyorDrew
Thu, 2016-08-11 05:56
Normal topic [Mover] is not known to the MoverFactory
by Jhreed » Fri, 2016-08-05 12:23
4
427 by msardejani
Sun, 2016-08-07 17:49
Normal topic reporting IteratedConvergence status
by sdh_h » Thu, 2016-08-04 10:05
2
255 by sdh_h
Thu, 2016-08-04 11:22
Normal topic how build (N-terminal 17 residues) structre /fragment file generation
by venkatazb » Wed, 2016-07-27 23:56
3
374 by smlewis
Fri, 2016-07-29 07:43
Normal topic combine silent.out file
by venkatazb » Fri, 2016-07-22 05:22
1
306 by smlewis
Fri, 2016-07-22 07:31
Normal topic Modeling protonated histidine
by SenyorDrew » Mon, 2016-07-18 07:34
2
366 by SenyorDrew
Mon, 2016-07-18 08:27
Normal topic short peptide fragment file generation
by cheyuk » Mon, 2016-07-11 00:04
4
475 by smlewis
Wed, 2016-07-13 23:41
Normal topic calculate RMSD (RNA modelling)
by obdulia » Tue, 2016-07-05 01:58
5
684 by obdulia
Wed, 2016-07-13 09:11
Normal topic pKa prediction using the Rosetta scoring function
by das » Tue, 2016-06-21 06:42
1
259 by ssrb
Tue, 2016-07-12 10:02
Normal topic TEST - who got this email?
by smlewis » Mon, 2016-05-23 17:24
1
261 by rmoretti
Tue, 2016-07-12 08:48
Normal topic ssDNA (aptamer)/protein docking
by JulienO » Fri, 2016-05-27 02:25
1
287 by rmoretti
Tue, 2016-07-12 08:47
Normal topic Problems with parametrisation
by DmitriiN » Fri, 2016-05-27 04:51
1
277 by rmoretti
Tue, 2016-07-12 08:43
Normal topic No output with docking full protocol
by JulienO » Mon, 2016-05-30 02:08
1
264 by rmoretti
Tue, 2016-07-12 08:40
Normal topic Rosetta: Clustering
by sskim » Sat, 2016-06-11 14:44
1
268 by rmoretti
Tue, 2016-07-12 08:36
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
by gsuchunli » Thu, 2016-06-30 11:06
2
640 by rmoretti
Tue, 2016-07-12 08:18
Normal topic Histidine phosphorylation by a patch
by felipet » Sat, 2016-07-09 06:51
2
383 by felipet
Sat, 2016-07-09 09:50
Normal topic Running CstFileToTheozyme for Mono-Atomic Metal
by Jhreed » Fri, 2016-07-08 13:43
0
177 by Jhreed
Fri, 2016-07-08 13:44
Normal topic Weird results from flexpepdock MPI
by gerdos » Fri, 2016-06-24 01:18
3
403 by smlewis
Thu, 2016-06-30 08:44
Normal topic multiple symmetry definition files
by sdh_h » Wed, 2016-06-29 09:31
1
226 by rmoretti
Wed, 2016-06-29 10:20
Hot topic New parametrization problems
by DmitriiN » Wed, 2016-06-08 05:09
25
2,356 by smlewis
Tue, 2016-06-28 09:05
Normal topic Score Differences between Ab Initio Scoring and Rescore
by mmarlett » Wed, 2016-06-15 09:14
2
321 by mmarlett
Thu, 2016-06-16 07:06
Normal topic Enumeration of Amino Acid identities
by achambe » Wed, 2016-06-15 15:28
1
234 by rmoretti
Wed, 2016-06-15 16:06
Normal topic CDR Cluster Constrained Relax Equivalent
by SenyorDrew » Wed, 2016-04-27 08:04
3
488 by SenyorDrew
Tue, 2016-06-14 06:43
Normal topic Parametrisation problems
by DmitriiN » Tue, 2016-05-31 09:37
2
344 by DmitriiN
Wed, 2016-06-01 15:46
Hot topic modified Serine: FoldTree::reorder( 1 ) failed, new/old edge_list_ size mismatch error
by Karol » Wed, 2016-05-04 08:47
17
1,750 by smlewis
Tue, 2016-05-17 08:06
Normal topic -RBSegmentRelax:cst_wt not present in ca_to_allatom.linuxgccrelease application?
by Karol » Thu, 2016-05-12 06:30
2
344 by Karol
Thu, 2016-05-12 07:58
Normal topic Structure-sequence alignment generation with selected PDB how?
by nzsuzsanna » Tue, 2016-05-10 07:39
0
220 by nzsuzsanna
Tue, 2016-05-10 07:39
Normal topic Submitting job to local cluster
by tusharranjanmoharana » Fri, 2016-04-15 01:38
8
1,367 by rmoretti
Mon, 2016-05-09 09:23
Normal topic backbone-independent density
by SergeyP » Sun, 2016-03-20 04:57
2
373 by SergeyP
Thu, 2016-05-05 02:07
Normal topic Ca-RMSD
by jrcf » Mon, 2016-02-29 16:39
2
519 by jrcf
Tue, 2016-05-03 17:40
Normal topic Comparative modeling Error: potential mismatch between sequence from alignment  and sequence from PDB!
by nzsuzsanna » Wed, 2016-04-27 05:32
4
735 by nzsuzsanna
Fri, 2016-04-29 04:30
Normal topic Generating Protein/NA decoys
by rbeier1 » Mon, 2016-01-11 03:25
1
387 by rmoretti
Thu, 2016-04-28 16:25
Normal topic Comparative Modeling databases?
by nitroamos » Wed, 2011-11-23 14:54
6
1,687 by rmoretti
Thu, 2016-04-28 16:15
Normal topic Error: Some problem with atom_id_mask in defining atom_id_map
by galvaner » Tue, 2016-03-01 13:23
1
310 by rmoretti
Thu, 2016-04-28 15:57
Normal topic RosettaDock decoys recoring with ZRANK
by cheyuk » Fri, 2014-04-11 01:40
5
2,635 by rmoretti
Thu, 2016-04-28 15:53
Normal topic setup_run error with multiple resonance lists
by aep » Fri, 2016-03-18 13:36
1
340 by rmoretti
Thu, 2016-04-28 15:49
Normal topic Give preference to native residue during fixed backbone designing
by tusharranjanmoharana » Mon, 2016-04-04 12:43
6
866 by rmoretti
Thu, 2016-04-28 15:19
Normal topic Error during docking with proteins containing norleucine
by aaj » Mon, 2016-04-25 15:04
1
255 by rmoretti
Thu, 2016-04-28 14:47
Normal topic industrial example of ROSETTA modeled protein
by banshee » Sat, 2016-04-23 23:40
5
704 by banshee
Tue, 2016-04-26 00:47
Normal topic Error while running MakeRotLib
by saxen » Sun, 2016-04-17 22:51
4
713 by saxen
Mon, 2016-04-25 10:38
Hot topic Creating centroid patches for Proline (pro_hydroxylated_case1 and pro_hydroxylated_case2)
by skovacs » Thu, 2012-05-10 20:10
18
4,765 by aaj
Fri, 2016-04-22 15:20
Normal topic Multiprocessor Execution
by starone » Tue, 2016-04-19 20:06
3
638 by smlewis
Thu, 2016-04-21 16:00
Normal topic non-canonical residues parametrisation
by DmitriiN » Tue, 2016-04-05 02:37
1
315 by rmoretti
Fri, 2016-04-08 08:43
Normal topic SnugDock equivalent in newer Rosetta code
by SenyorDrew » Tue, 2016-03-29 09:16
2
459 by SenyorDrew
Wed, 2016-04-06 10:52
Normal topic segfault in membrane_abinitio2.mpi
by siegert » Sat, 2014-06-14 15:56
1
600 by yarovoy
Wed, 2016-03-30 12:37
Normal topic Errors in scorefiles after running Design
by Jhreed » Tue, 2016-03-29 10:25
4
597 by smlewis
Wed, 2016-03-30 09:52

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