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Rosetta 3 - General

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:16
0
5,107 by admin
Fri, 2015-09-04 16:17
Normal topic Ddg calculation for a metalloprotein using APBS
by dfcoelho » Tue, 2019-11-19 10:06
2
29 by dfcoelho
Wed, 2019-11-20 05:39
Normal topic Is cis-Glycine okay?
by matteoferla » Tue, 2019-11-19 07:26
5
26 by matteoferla
Wed, 2019-11-20 02:32
Normal topic protein surface design
by tatsiana.bylund » Sun, 2019-09-15 03:44
2
102 by dfcoelho
Tue, 2019-11-19 10:16
Normal topic AbInitioRelax.mpi Hangs - Waiting for Job Request
by nleroy » Thu, 2019-10-31 07:30
2
148 by nleroy
Fri, 2019-11-08 12:44
Normal topic Can I thread a two chained structure in RosettaCM?
by ahmadkhalifa » Mon, 2018-01-08 09:41
3
687 by aaxx
Wed, 2019-11-06 01:44
Normal topic Error in Hybridize of Rosetta Comparative Modeling.
by Ivan » Fri, 2019-11-01 07:46
1
58 by rmoretti
Mon, 2019-11-04 12:54
Normal topic Errors in Interface design  
by Kazu » Thu, 2019-10-31 17:48
0
63 by Kazu
Thu, 2019-10-31 17:48
Normal topic De novo density assembly weights don't add up to a 100
by ahmadkhalifa » Fri, 2018-08-03 12:07
3
341 by rmoretti
Tue, 2019-10-22 07:05
Normal topic Does Rosetta have a separate refinement function?
by ylwang » Tue, 2019-09-24 19:08
2
198 by ylwang
Tue, 2019-10-08 18:34
Normal topic Ab initio structure prediction for long amino acid sequence
by maruhuang » Fri, 2019-08-02 03:38
4
161 by maruhuang
Thu, 2019-09-26 18:55
Normal topic how to perform model quality assessment of rosetta generated models?
by Danielsebas » Tue, 2019-09-24 05:03
0
105 by Danielsebas
Tue, 2019-09-24 05:03
Normal topic How to get fragment library from robetta server for mre than 1000 residue sequence?
by Danielsebas » Wed, 2019-09-18 07:53
1
102 by rmoretti
Wed, 2019-09-18 10:49
Normal topic Ligand question - aromatic bonds not being enforced?
by Rick_Baker » Wed, 2019-09-11 09:08
1
105 by Rick_Baker
Wed, 2019-09-11 15:35
Normal topic lysine-aspartate isopeptide bond
by matteoferla » Tue, 2016-11-01 10:54
13
4,062 by ablakely7
Wed, 2019-09-11 15:33
Normal topic AbinitioRelax of RCSB PDB structures
by ac.research » Tue, 2019-09-03 02:35
1
115 by danpf
Tue, 2019-09-03 10:39
Normal topic Fixing certain residues during refinement
by ckdenist » Thu, 2019-08-29 14:00
1
92 by jadolfbr
Thu, 2019-08-29 14:29
Normal topic problem parsing a THR residue
by decrSTL » Wed, 2019-08-21 12:25
4
188 by decrSTL
Tue, 2019-08-27 10:24
Closed topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:20
1
113 by rmoretti
Mon, 2019-08-26 15:01
Normal topic MakeRotLib
by yinasun » Sun, 2019-07-28 20:08
1
111 by rmoretti
Mon, 2019-08-26 15:00
Normal topic Unable to create col_complex.pdb file
by sayan500 » Tue, 2019-07-30 22:08
1
122 by rmoretti
Mon, 2019-08-26 14:52
Normal topic Rosetta job distribution error
by ss » Thu, 2019-08-01 09:26
7
281 by rmoretti
Mon, 2019-08-26 14:11
Normal topic Design with non-canonical amino acids (NCAA)
by yinasun » Mon, 2019-08-05 00:34
2
157 by matteoferla
Thu, 2019-08-22 05:39
Normal topic Flag to not use PDB ligands
by matteoferla » Wed, 2019-08-21 10:14
2
162 by matteoferla
Wed, 2019-08-21 11:58
Normal topic Where to find old version of Rosetta with git version number
by mao_x » Wed, 2019-08-07 01:22
2
150 by mao_x
Thu, 2019-08-08 01:37
Normal topic RosettaDesign
by ac.research » Sun, 2019-07-21 01:20
2
871 by ac.research
Sat, 2019-08-03 08:12
Normal topic Disulfidize mover
by karenjgonzalez » Wed, 2019-07-31 12:35
0
112 by karenjgonzalez
Wed, 2019-07-31 12:35
Normal topic Error in Loop Modeling
by sayan500 » Tue, 2019-07-30 22:20
0
158 by sayan500
Tue, 2019-07-30 22:20
Normal topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:18
1
131 by vmulligan
Fri, 2019-07-26 15:00
Normal topic rosetta run error
by isengupta13 » Thu, 2010-06-03 19:00
2
1,121 by aminzia
Fri, 2019-07-26 13:14
Normal topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:17
0
111 by yinasun
Fri, 2019-07-26 02:17
Normal topic This element is not expected.
by ac.research » Fri, 2017-10-13 03:47
5
1,523 by BioPython
Fri, 2019-07-12 03:15
Normal topic How to determine the value size in block of *.cst files?
by weifulei » Sun, 2019-05-05 19:56
1
159 by rmoretti
Tue, 2019-07-09 15:59
Normal topic The question about FavorNativeResidue
by asbelx » Fri, 2019-04-12 20:02
1
220 by rmoretti
Tue, 2019-07-09 15:57
Normal topic How to determine the value size in block of *.cst files?
by weifulei » Sun, 2019-05-05 19:56
1
170 by rmoretti
Tue, 2019-07-09 15:48
Normal topic how to design binding interface?
by Lindsay » Mon, 2013-12-02 19:06
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5,572 by rmoretti
Tue, 2019-07-09 12:50
Normal topic How to define a theozyme from the .pdb crystal structure without ligand?
by weifulei » Mon, 2019-05-20 21:18
1
225 by rmoretti
Tue, 2019-07-09 12:31
Normal topic ERROR: Unable to open weights/patch file
by peony » Sun, 2013-11-17 02:49
4
3,741 by rmoretti
Tue, 2019-07-09 10:29
Normal topic Rosetta3 Tutorials
by smlewis » Fri, 2011-11-18 07:33
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11,510 by rmoretti
Tue, 2019-07-09 10:24
Normal topic IS there any source code about protein structure prediction with only sequences information?
by ylwang » Mon, 2019-07-08 02:36
1
103 by rmoretti
Mon, 2019-07-08 08:05
Normal topic Mutations are ignored (fixbb) when using -auto_setup_metals option
by hdelrisco » Wed, 2019-06-19 15:43
1
172 by smlewis
Fri, 2019-06-28 13:56
Normal topic Hydrogen bond detection and shape complementarity
by sujigeorge1979 » Fri, 2019-06-14 02:39
3
303 by sujigeorge1979
Thu, 2019-06-27 01:30
Normal topic InterfaceAnalyzer total score = 0.000
by vmc99 » Wed, 2019-06-12 14:06
3
250 by jadolfbr
Wed, 2019-06-12 20:17
Normal topic InterfaceAnalyzer packstat score = 0.000
by vmc99 » Fri, 2018-11-16 11:30
11
1,299 by SenyorDrew
Wed, 2019-06-12 14:10
Normal topic File specification of binary part of silent file (especially PDB section)
by m.ebert » Wed, 2019-05-29 01:52
1
158 by smlewis
Wed, 2019-05-29 13:21
Normal topic How to specify residue numbers in a resfile for a batch of pdbs, while some of them have missing residue numbers?
by johnnytam100 » Wed, 2019-05-08 02:30
2
248 by johnnytam100
Wed, 2019-05-15 18:45
Normal topic Memory leak when PDB preparation
by Jacky010 » Mon, 2019-05-06 01:28
6
433 by Jacky010
Tue, 2019-05-14 01:24
Normal topic How to use the <CavityVolume> filter in the released version of Rosetta
by BioPython » Sun, 2019-05-12 20:07
0
172 by BioPython
Sun, 2019-05-12 20:07
Normal topic Rosetta Antibody cuts off light chain?
by ziheng@mit.edu » Thu, 2019-05-02 15:17
1
237 by jeliazkov
Fri, 2019-05-03 07:00
Normal topic LHOC script problem in Rosetta Antibody
by ziheng@mit.edu » Thu, 2019-04-25 14:19
1
208 by ziheng@mit.edu
Thu, 2019-04-25 14:31
Normal topic problems with implementing NOE constraints
by connyyu » Thu, 2019-04-11 12:37
1
213 by connyyu
Thu, 2019-04-18 03:26
Normal topic protocols.jd2.JobDistributor: [ ERROR ]
by johnnytam100 » Thu, 2019-04-11 09:30
5
472 by jadolfbr
Tue, 2019-04-16 09:15
Normal topic MSDMover error in RECON protocol
by yifeili1983 » Mon, 2019-04-01 00:44
2
279 by yifeili1983
Mon, 2019-04-15 22:34
Normal topic intrensic disrodered proteins
by ac.research » Thu, 2019-04-04 07:20
1
197 by vmulligan
Mon, 2019-04-08 14:49
Normal topic Rosetta params for taxol
by ahmadkhalifa » Sat, 2019-03-30 22:37
1
200 by rmoretti
Wed, 2019-04-03 10:03
Normal topic perturb_temp flag
by Loki01 » Tue, 2018-11-27 05:06
2
276 by rmoretti
Wed, 2019-04-03 09:58
Normal topic Multi-state design with the error "unable to locate database file"
by yifeili1983 » Sun, 2019-03-31 18:30
1
212 by rmoretti
Wed, 2019-04-03 09:31
Normal topic Clarify ProteinInterfaceDesign “randomness”
by tsztain » Wed, 2019-02-27 09:41
3
392 by rmoretti
Sat, 2019-03-30 12:12
Normal topic Denovo prediction from multiple fragment lengths
by ahmadkhalifa » Sun, 2019-03-24 03:55
1
194 by rmoretti
Sat, 2019-03-30 12:10
Normal topic Add hemes to cytochrome structures
by BuddySphinx » Sun, 2018-12-16 13:46
2
331 by rmoretti
Fri, 2019-03-29 14:43
Normal topic Misleading error message
by renedominik » Tue, 2019-03-12 01:19
1
268 by vmulligan
Tue, 2019-03-26 11:30
Normal topic Error with simple_cycpep_predict protocol while using a native pdb file
by Florent Langenfeld » Tue, 2019-03-26 10:05
1
180 by vmulligan
Tue, 2019-03-26 11:23
Normal topic alignblast.pl truncated file
by rlwoltz » Mon, 2019-03-11 18:32
0
196 by rlwoltz
Mon, 2019-03-11 18:32
Hot topic protein design question
by bo » Fri, 2012-08-24 10:41
33
15,861 by jyy
Wed, 2019-02-20 00:30
Normal topic make_fragments.pl
by rlwoltz » Fri, 2019-02-01 10:31
0
360 by rlwoltz
Fri, 2019-02-01 10:31
Normal topic Error when using RabD with a nanobody.
by zhangying1990 » Mon, 2018-12-17 04:40
5
701 by jadolfbr
Mon, 2019-01-28 08:46
Normal topic RosettaMatch Problem
by David » Tue, 2019-01-22 12:23
0
326 by David
Tue, 2019-01-22 12:23
Normal topic Errors in Interface_design_demo
by zhoubin » Fri, 2019-01-04 13:14
0
254 by zhoubin
Fri, 2019-01-04 13:14
Normal topic protein ligand docking
by patrickchirdon » Sun, 2018-12-30 15:07
4
605 by smlewis
Mon, 2018-12-31 08:58
Normal topic Searching density map using real space correlation
by ahmadkhalifa » Fri, 2018-12-28 00:28
0
178 by ahmadkhalifa
Fri, 2018-12-28 00:28
Normal topic Relax output mmCIF file to a particular path
by AJVincelli » Sun, 2018-11-25 11:04
1
242 by AJVincelli
Sun, 2018-11-25 11:09
Normal topic Consistent XYZvector length() zero failure in EnzDes
by mwfranklin » Thu, 2018-11-01 12:44
1
320 by rmoretti
Wed, 2018-11-21 14:14
Normal topic Iterative local rebuilding vs automated structure refinement
by ahmadkhalifa » Fri, 2018-09-14 07:44
4
745 by rmoretti
Wed, 2018-11-21 14:11
Normal topic Ab Initio large threshold for clustering
by Swillard » Mon, 2018-11-12 14:14
1
281 by rmoretti
Wed, 2018-11-21 14:01
Normal topic Rosetta lack of necessary application
by ylwang » Wed, 2018-11-07 01:13
3
521 by rmoretti
Wed, 2018-11-21 13:50
Normal topic Is it better to have smaller nstruct but many runs?
by Loki01 » Mon, 2018-11-19 11:50
3
466 by smlewis
Mon, 2018-11-19 13:20
Normal topic Denovo density didn't output a structure
by ahmadkhalifa » Mon, 2018-02-12 08:10
3
766 by ylwang
Wed, 2018-11-14 03:03
Normal topic How to minimize only a few key residues' orientation
by Ronghai Cheng » Mon, 2018-11-05 18:37
2
428 by Ronghai Cheng
Tue, 2018-11-13 21:56
Normal topic Rosetta CM - Ignore Sporadic Errors
by Swillard » Wed, 2018-06-13 05:47
6
1,022 by rmoretti
Mon, 2018-11-12 14:29
Normal topic Rosetta-based projects using and licensing
by SergeyP » Fri, 2018-10-26 15:45
3
599 by SergeyP
Mon, 2018-11-12 09:19
Normal topic Incorporating Rosetta Binary and Database to a Web Server Pipeline
by smkim » Fri, 2018-09-28 20:35
1
526 by rmoretti
Fri, 2018-11-09 12:22
Normal topic Rosetta script to relax a neighborhood only
by matteoferla » Mon, 2018-10-29 03:34
1
305 by jadolfbr
Fri, 2018-11-09 09:17
Normal topic crashed when loading RDC data
by yangshen12 » Fri, 2018-10-26 12:34
0
249 by yangshen12
Fri, 2018-10-26 12:34
Normal topic DockingProtocol mover ensemble error
by dfcoelho » Tue, 2018-10-16 08:32
1
348 by dfcoelho
Tue, 2018-10-16 08:35
Normal topic Error in enzyme_design.default.linuxgccrelease: corrupted size vs. prev_size
by dasdevashishdas » Fri, 2018-10-12 00:55
0
314 by dasdevashishdas
Fri, 2018-10-12 00:55
Normal topic env energy term
by bazzoli » Wed, 2018-10-10 01:59
0
264 by bazzoli
Wed, 2018-10-10 01:59
Normal topic Params file for Methane
by dasdevashishdas » Sun, 2018-10-07 21:34
1
297 by rmoretti
Mon, 2018-10-08 11:20
Normal topic Peripheral membrane protein modeling
by Fukiishi » Tue, 2018-10-02 02:09
3
570 by matteoferla
Thu, 2018-10-04 01:30
Normal topic Constraints use in RosettaCM
by a.book » Wed, 2018-10-03 12:11
0
257 by a.book
Wed, 2018-10-03 15:56
Normal topic How to define the surface (???.surf) for surface_docking?
by Anpu » Thu, 2018-09-27 07:34
0
210 by Anpu
Thu, 2018-09-27 23:36
Normal topic Is CST_Design required for enzdes protocol?
by dasdevashishdas » Mon, 2018-09-03 00:51
2
530 by dasdevashishdas
Thu, 2018-09-27 03:35
Normal topic Fluctuations in I_sc
by eminegenetics » Thu, 2018-09-13 12:07
4
657 by eminegenetics
Fri, 2018-09-21 07:42
Normal topic known disulfides in Remodel sequence
by matteoferla » Mon, 2018-09-10 06:43
1
423 by matteoferla
Thu, 2018-09-13 06:21
Normal topic Docking tree issues
by salvatta » Tue, 2018-07-17 05:57
5
876 by salvatta
Mon, 2018-09-10 10:04
Normal topic incomparable ddG values
by ela » Fri, 2018-08-31 02:53
0
255 by ela
Fri, 2018-08-31 02:53
Normal topic RosettaCM density guided rebuilding methodology
by ahmadkhalifa » Thu, 2018-08-30 06:45
4
642 by ahmadkhalifa
Thu, 2018-08-30 23:09
Normal topic Reading chloride anions
by Martin Floor » Mon, 2018-08-27 14:29
2
494 by Martin Floor
Tue, 2018-08-28 13:21
Normal topic Rosetta CM incorrect threading
by ahmadkhalifa » Mon, 2018-08-06 11:09
6
1,159 by rmoretti
Fri, 2018-08-24 11:59
Normal topic Do Rosetta support hydroxide(OH-) and oxide(O2-) params?
by dasdevashishdas » Thu, 2018-08-16 21:15
2
515 by dasdevashishdas
Thu, 2018-08-23 18:02
Normal topic recommended function type for cross links data
by meravb » Sun, 2018-08-05 06:57
2
441 by rmoretti
Mon, 2018-08-20 11:51

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