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Rosetta 3 - General
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FAQ by admin » Mon, 2010-08-30 04:16 |
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by admin Fri, 2015-09-04 16:17 |
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FARFAR2 error: [ERROR: Not complementary at positions] by Eden » Sat, 2023-11-18 02:39 |
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by Eden Sat, 2023-11-18 02:39 |
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Methodology Feedback with As(III) and Pb(II) Binding by rnogy » Mon, 2023-11-06 17:05 |
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70 |
by rnogy Mon, 2023-11-06 17:06 |
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FARFAR2 Error With Secondary Structure File by bdh81 » Thu, 2023-11-02 09:01 |
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131 |
by bdh81 Sun, 2023-11-05 16:04 |
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protein-protein docking by LUOD » Thu, 2023-11-02 18:23 |
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76 |
by LUOD Thu, 2023-11-02 18:25 |
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JD3 w/ Silent file output crashing - Option filename not found by aduffy33 » Mon, 2023-10-30 13:40 |
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by aduffy33 Mon, 2023-10-30 15:35 |
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ERROR: Assertion `build_sets_[ build_set_id ].restype().has( "1HA" )` failed. ERROR:: Exit from: src/protocols/match/upstream/Pr by alove1 » Sat, 2023-10-28 17:19 |
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by alove1 Mon, 2023-10-30 13:18 |
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Unable to download Rosetta by Yair Tenorio » Mon, 2023-10-23 11:48 |
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by Yair Tenorio Mon, 2023-10-23 12:29 |
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Docking antibody to membrane protein by Yegor_Ko » Thu, 2023-10-12 07:37 |
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215 |
by Yegor_Ko Fri, 2023-10-20 01:35 |
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Problem with sugar parameters by Martin Floor » Sat, 2023-10-07 10:17 |
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321 |
by Martin Floor Sat, 2023-10-07 10:17 |
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Error in flex ddG tutorial by wentlewi » Sat, 2020-05-16 08:06 |
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1,499 |
by Alvin Yang Wed, 2023-10-04 03:34 |
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Replacing a single residue in a structure by Wexter300 » Sat, 2023-09-16 14:23 |
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359 |
by Wexter300 Sat, 2023-09-16 14:23 |
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RosettaDock - protonation states by LWilliamson » Tue, 2023-08-15 08:15 |
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618 |
by nannemdp Thu, 2023-08-24 08:21 |
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Predicting conformations of mutated residues by Delfosse57 » Tue, 2023-08-22 12:26 |
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by rmoretti Wed, 2023-08-23 08:26 |
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Error when using published constraints file by Delfosse57 » Thu, 2023-08-17 11:22 |
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276 |
by ikalvet Mon, 2023-08-21 05:52 |
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Generating Params File for water molecule by Ahmed Raslan » Thu, 2023-08-17 13:13 |
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by Ahmed Raslan Thu, 2023-08-17 13:13 |
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[ WARNING ] missing an atom: 1 H that depends on a nonexistent polymer connection! by Jane_002 » Tue, 2023-08-08 21:07 |
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387 |
by Jane_002 Tue, 2023-08-08 21:07 |
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GALigandDock errors by Delfosse57 » Mon, 2023-08-07 13:16 |
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by Delfosse57 Mon, 2023-08-07 13:16 |
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different relaxed energy scores for one same protein structure by ivareve125 » Sun, 2023-07-16 17:54 |
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by ivareve125 Mon, 2023-07-17 17:37 |
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Questions about gen_apo_grids by JasonIsaac » Sat, 2023-06-17 00:20 |
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by JasonIsaac Sat, 2023-06-17 00:20 |
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Memory error - double free or corruption by almeida85 » Thu, 2023-05-25 06:18 |
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by almeida85 Thu, 2023-05-25 06:18 |
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Scoring correlation with electron density map by mrosam » Thu, 2023-05-25 05:14 |
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by mrosam Thu, 2023-05-25 05:14 |
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Changing amino acid profile while keeping the backbone conformation between 2 protein structures (need help) by seamoon » Wed, 2023-05-24 07:46 |
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by seamoon Wed, 2023-05-24 07:46 |
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Missing atoms, unable to fill in missing atoms by kwu030 » Fri, 2023-05-05 12:58 |
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1,692 |
by kwu030 Thu, 2023-05-18 08:31 |
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ERROR: beta_nov16(.wts) requested, but -corrections::beta_nov16 not set to true. This leads to a garbage scorefunction. by sia » Mon, 2023-05-08 06:36 |
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816 |
by rmoretti Tue, 2023-05-16 07:10 |
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Figuring out the input flags required for this script by jjung380 » Wed, 2023-04-19 14:17 |
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678 |
by rmoretti Mon, 2023-05-15 15:23 |
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Intel MPI: early exit due to job process stopped. by jackzzs » Mon, 2023-05-15 02:57 |
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by jackzzs Mon, 2023-05-15 03:17 |
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Calculating SAP score using RosettaScripts by varunmc99 » Fri, 2023-05-12 11:03 |
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by varunmc99 Fri, 2023-05-12 11:49 |
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Converting all residues to poly-Gly/Ala by jtpi6174 » Tue, 2023-05-09 14:14 |
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388 |
by jtpi6174 Tue, 2023-05-09 15:51 |
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location of define_interface.py by rohi » Mon, 2020-10-26 19:42 |
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1,581 |
by rmoretti Tue, 2023-05-09 15:32 |
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How many rifdock can I run at a time on a 64 CPUs and 512GB memory server? by JasonIsaac » Tue, 2023-05-02 03:39 |
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by JasonIsaac Tue, 2023-05-02 03:39 |
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rosie github log in by YUANXU » Tue, 2023-04-25 20:13 |
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319 |
by Sergey Thu, 2023-04-27 12:03 |
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Any general way to generate .params file for beta and gamma NCAA? by wwwmrzkwww » Wed, 2023-04-26 12:35 |
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by wwwmrzkwww Wed, 2023-04-26 12:35 |
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TaskOperations with AntibodyDesignMover by chenna » Sun, 2023-04-23 23:52 |
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by chenna Sun, 2023-04-23 23:52 |
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how to generate _prepro.rama file for a customized beta-amino acid residues? by wwwmrzkwww » Sun, 2023-04-23 14:25 |
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by wwwmrzkwww Sun, 2023-04-23 14:25 |
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Error with residue selectors not counting indices correctly. by Wexter300 » Tue, 2023-04-04 11:04 |
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320 |
by ajasja Wed, 2023-04-05 00:20 |
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Method for adding residues into PDB's w/ RosettaScripts. by Wexter300 » Wed, 2023-03-15 13:07 |
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418 |
by rmoretti Thu, 2023-03-16 11:46 |
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Your compiler does not have full support for C++ll regex, and therefore can't suport RegEx_based_CDR_Detector/antitody grafting. by ldx022 » Thu, 2023-03-09 17:03 |
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by ldx022 Sat, 2023-03-11 16:53 |
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RuntimeError: CUDA out of memory. by ravi.thakkar » Tue, 2023-03-07 00:27 |
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by rmoretti Tue, 2023-03-07 08:18 |
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Error when trying to use xml script to design PDB by Wexter300 » Fri, 2023-02-24 13:29 |
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by rmoretti Fri, 2023-02-24 13:58 |
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Which application/mover should I use to evaluate the ddg between apo enzyme and enzyme binding with transition state? by JasonIsaac » Wed, 2023-02-22 18:36 |
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by JasonIsaac Wed, 2023-02-22 18:36 |
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How to handle/retain Metals (Zn, Ca) inside the Protein? by aniyaz » Wed, 2023-01-11 03:21 |
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1,128 |
by rmoretti Mon, 2023-02-20 16:07 |
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can't access rosetta commercial license download via given URL from CoMotion by y_atsmonraz » Tue, 2023-02-14 11:04 |
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1,154 |
by rmoretti Thu, 2023-02-16 13:48 |
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Rosetta remodelling - how to change the added residue type instead of just VAL by xuezhi » Wed, 2023-02-15 14:00 |
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by xuezhi Wed, 2023-02-15 14:00 |
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How to set jump between ligands by Zehui Zhou » Wed, 2023-02-15 04:48 |
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316 |
by Zehui Zhou Wed, 2023-02-15 07:12 |
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Score function in protein-protein docking with constrains by Zehui Zhou » Mon, 2023-02-06 03:31 |
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645 |
by Zehui Zhou Wed, 2023-02-15 05:40 |
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Truncating a protein using rosetta by Wexter300 » Mon, 2023-02-13 12:05 |
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454 |
by Wexter300 Mon, 2023-02-13 13:04 |
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Segmentation fault with nstruct > 1 by Brian Wiley » Sun, 2023-02-12 20:46 |
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by Brian Wiley Sun, 2023-02-12 20:46 |
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How to add uncommon metal elements into Rosetta and make it recognizable? by JasonIsaac » Thu, 2023-02-09 00:08 |
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706 |
by JasonIsaac Sat, 2023-02-11 00:44 |
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No values for total score while running Rosetta score file. by Shweata Maurya » Wed, 2023-02-01 02:05 |
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777 |
by Shweata Maurya Wed, 2023-02-08 03:19 |
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Calculating shape complementarity of ligand and protein by varunmc99 » Tue, 2023-01-17 11:29 |
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489 |
by rmoretti Mon, 2023-02-06 14:42 |
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Grafting using antibody.mpi.linuxgccrelease , the modelled structure does not have constant region of the antibody. by SubhaK » Thu, 2023-01-26 21:29 |
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by rmoretti Mon, 2023-02-06 14:35 |
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Error in H3_modeling_scores.fasc file from antibody_H3 program by Brian Wiley » Sat, 2023-02-04 23:41 |
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by Brian Wiley Sat, 2023-02-04 23:43 |
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LHOC script problem in Rosetta Antibody by ziheng@mit.edu » Thu, 2019-04-25 14:19 |
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1,940 |
by Brian Wiley Sat, 2023-02-04 23:26 |
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Run protein-protein docking parallelly by mpi by Zehui Zhou » Thu, 2023-02-02 06:23 |
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609 |
by Zehui Zhou Fri, 2023-02-03 05:51 |
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Should all input structures to energy_based_clustering have an output pdb file? by Brian Wiley » Mon, 2023-01-30 20:42 |
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by Brian Wiley Tue, 2023-01-31 19:08 |
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Error with options -dunbrack_prob_buried_semi and -dunbrack_prob_nonburied_semi by SamuelGong » Fri, 2023-01-27 06:20 |
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644 |
by rmoretti Mon, 2023-01-30 08:04 |
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Error when attempting to relax pdb, "flag_input_relax" not found by Wexter300 » Mon, 2023-01-23 11:32 |
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678 |
by Wexter300 Wed, 2023-01-25 12:34 |
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Why are 'fa_rep' and 'fa_intra_rep' higher in 'ref2015_soft.wts' than in 'ref2015.wts'? by JW_24 » Tue, 2023-01-24 04:40 |
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539 |
by JW_24 Tue, 2023-01-24 14:52 |
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Structure Prediction of protein mutant using relax by Delfosse57 » Tue, 2023-01-10 13:26 |
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451 |
by JW_24 Tue, 2023-01-24 04:55 |
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undefined symbol: ZN9CifString12UnknownValueE error meaning? by aniyaz » Wed, 2023-01-04 08:37 |
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873 |
by aniyaz Wed, 2023-01-11 01:24 |
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Different dG_separated from RAbD and InterfaceAnalyzer by brubin » Mon, 2022-12-19 13:58 |
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660 |
by brubin Tue, 2022-12-20 13:26 |
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Unexpected length of light chain FR1 by mgupta » Fri, 2022-12-09 01:03 |
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505 |
by mgupta Fri, 2022-12-09 01:03 |
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Prepacking crashing using metalloprotein by mb0261 » Tue, 2022-12-06 10:16 |
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450 |
by mb0261 Tue, 2022-12-06 10:16 |
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What should I do to lower down the fa_sol scores? by JasonIsaac » Mon, 2022-12-05 18:57 |
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457 |
by JasonIsaac Mon, 2022-12-05 18:57 |
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Adding NCAA with Metal Ion by MustafaBughio » Mon, 2022-11-28 15:07 |
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646 |
by JasonIsaac Mon, 2022-12-05 18:41 |
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Predicting structure of protein after a few mutations by Delfosse57 » Thu, 2022-12-01 20:40 |
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451 |
by Delfosse57 Thu, 2022-12-01 20:40 |
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Loop modeling by Robertofg » Tue, 2022-11-22 00:34 |
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438 |
by Robertofg Tue, 2022-11-22 00:34 |
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N-Terminal Galactose by SebastianBB » Mon, 2022-11-21 08:33 |
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411 |
by SebastianBB Mon, 2022-11-21 08:33 |
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Error in rosetta_scripts.mpi.linuxgccrelease: double free or corruption (!prev): 0x0000000007697a90 by almeida85 » Thu, 2022-11-17 01:04 |
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405 |
by almeida85 Thu, 2022-11-17 01:04 |
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Where is Sicdock application now? Can I find a substitute？ by JasonIsaac » Sun, 2022-11-13 03:41 |
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757 |
by rmoretti Mon, 2022-11-14 07:27 |
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pose.energies().total_enegies().show_nonzero() changes after packer is applied by Liviu Copoiu » Mon, 2022-11-07 16:51 |
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647 |
by Liviu Copoiu Tue, 2022-11-08 10:43 |
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What is virtual atom means in a params file and how to generate it？ by JasonIsaac » Fri, 2022-11-04 04:53 |
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1,066 |
by JasonIsaac Mon, 2022-11-07 19:15 |
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Error with sequence_tolerance.R processing the checkpoint files, *.ga.entities and *.ga.generations. by He Xiao » Mon, 2022-11-07 03:41 |
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408 |
by He Xiao Mon, 2022-11-07 04:10 |
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total_score changes when decomposing bb hbonds ref2015 by Liviu Copoiu » Mon, 2022-10-31 15:40 |
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617 |
by Liviu Copoiu Mon, 2022-10-31 16:03 |
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Failure to produce a cst file by biotech » Wed, 2022-10-26 11:17 |
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385 |
by biotech Wed, 2022-10-26 11:17 |
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On iterations in ddg_monomer by Proteinmechanic » Fri, 2022-09-30 21:23 |
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386 |
by Proteinmechanic Fri, 2022-09-30 21:23 |
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Save silent results to individual directory by process ID by Payne » Sat, 2022-09-24 05:23 |
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797 |
by rmoretti Thu, 2022-09-29 00:15 |
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Ensemble Docking with RosettaDock 4.0 Protocol by mb0261 » Wed, 2022-07-27 07:00 |
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855 |
by mb0261 Mon, 2022-09-26 07:50 |
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GeneralizedKIC side chain closure. by almeida85 » Mon, 2022-09-19 06:13 |
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432 |
by almeida85 Mon, 2022-09-19 07:22 |
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Rosettascript - change residue number and chain ID by cttm4a1 » Wed, 2022-09-14 23:40 |
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390 |
by cttm4a1 Wed, 2022-09-14 23:40 |
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core.pack.rotamer_set.RotamerSet_: (0) Using simple Rotamer generation logic for pdb_NAP by to-qinbin@163.com » Wed, 2022-09-14 06:06 |
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508 |
by rmoretti Wed, 2022-09-14 09:14 |
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Residue outside res_map range by to-qinbin@163.com » Sat, 2022-09-10 01:56 |
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854 |
by rmoretti Mon, 2022-09-12 07:01 |
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clean_pdb_keep_ligand.py IndexError by to-qinbin@163.com » Sat, 2022-09-10 04:04 |
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580 |
by rmoretti Mon, 2022-09-12 06:58 |
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Proper indexing of grafted residues by CCDEndsGraftMover by cttm4a1 » Wed, 2022-09-07 23:41 |
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386 |
by cttm4a1 Wed, 2022-09-07 23:41 |
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Sequence symmetry during FastDesign for repeat protein design by cttm4a1 » Tue, 2022-09-06 21:02 |
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539 |
by rmoretti Wed, 2022-09-07 09:19 |
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Multiple Relax runnings by mb0261 » Sat, 2022-08-27 05:42 |
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576 |
by rmoretti Tue, 2022-09-06 08:22 |
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PDB weird to PDB rosetta friendly by jpfuenzalidawx » Fri, 2022-09-02 04:43 |
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587 |
by rmoretti Tue, 2022-09-06 08:13 |
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Residue outside res_map range by amcallister » Fri, 2022-04-22 11:26 |
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727 |
by aneeqh Fri, 2022-09-02 13:36 |
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Get fasta from PDB script correction - Solved by ialvy » Tue, 2022-08-30 00:00 |
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414 |
by ialvy Tue, 2022-08-30 00:00 |
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Using specific rotamers by sahn97 » Fri, 2022-08-26 13:45 |
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581 |
by rmoretti Fri, 2022-08-26 14:51 |
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GeneralizedKIC disulfide closure by Ken » Tue, 2022-08-16 13:32 |
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788 |
by Ken Wed, 2022-08-17 08:04 |
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Designing Feasible Backbones by csvajda » Sat, 2022-08-13 08:08 |
0 |
457 |
by csvajda Sat, 2022-08-13 08:08 |
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Unrecognized D-Leu name / C-terminal ACE by almeida85 » Thu, 2022-08-11 07:43 |
1 |
542 |
by almeida85 Fri, 2022-08-12 05:56 |
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ERROR: Unable to open weights/patch file by almeida85 » Tue, 2022-08-09 05:33 |
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808 |
by almeida85 Thu, 2022-08-11 00:32 |
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Repeated entries in silent file by almeida85 » Fri, 2022-08-05 02:52 |
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1,104 |
by almeida85 Thu, 2022-08-11 00:29 |
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Interface scores comparison by NingNing » Tue, 2022-08-09 17:36 |
0 |
393 |
by NingNing Tue, 2022-08-09 17:36 |
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Problems with ICOOR when generating polymer params file by liuwenxi » Tue, 2022-08-09 08:33 |
0 |
402 |
by liuwenxi Tue, 2022-08-09 08:33 |
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ERROR: Your compiler does not have full support for C++11 regex, and therefore can't support RegEx_based_CDR_Detector/antibody g by yliang20 » Mon, 2022-08-08 16:59 |
1 |
762 |
by rmoretti Tue, 2022-08-09 06:52 |
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Temperature by mrosam » Mon, 2022-08-08 01:37 |
0 |
385 |
by mrosam Mon, 2022-08-08 01:37 |
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