You are here

Rosetta 3 - General

Pages

Topic / Topic starter Replies Views Last postsort ascending
Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:16
0
5,720 by admin
Fri, 2015-09-04 16:17
Normal topic adding NCAA to the N-terminal of RCSB pdb
by ate » Tue, 2021-06-08 08:24
4
131 by Subhrodeep Saha
Sat, 2021-06-19 07:17
Normal topic Flex-pep-docking (ab-initio mode)
by ate » Wed, 2021-06-16 19:19
0
34 by ate
Wed, 2021-06-16 19:19
Normal topic Obtaining all PDB IDs containing similar binding sites for a specific ligand
by Antonia » Wed, 2021-06-16 12:30
0
28 by Antonia
Wed, 2021-06-16 12:30
Normal topic Obtain score during prediction
by CameronJA » Mon, 2021-06-14 16:12
0
49 by CameronJA
Mon, 2021-06-14 16:12
Normal topic Internal error while running AbinitioRelax
by Subhrodeep Saha » Sun, 2021-06-13 03:44
1
56 by rmoretti
Mon, 2021-06-14 06:53
Normal topic covalent ligand docking in Rosetta
by rohi » Mon, 2021-06-07 06:39
3
112 by matteoferla
Thu, 2021-06-10 10:51
Normal topic Blast error for rosetta antibody: No argument value given for Query file
by dngusdnr1 » Tue, 2021-06-08 17:32
1
78 by taylorjones
Wed, 2021-06-09 16:30
Normal topic parameter file of GLU protonated (GLU_P1.params)
by rohi » Sat, 2021-06-05 20:44
1
77 by nannemdp
Sun, 2021-06-06 09:26
Normal topic Segmentation fault on antibody structure prediction
by dkesar » Fri, 2021-06-04 19:09
0
71 by dkesar
Fri, 2021-06-04 19:09
Normal topic FastRelax Mover with symmetry, ligand and membrane
by Michele.Bonus » Wed, 2021-05-26 04:43
1
165 by matteoferla
Thu, 2021-06-03 08:24
Normal topic partial charge of params file in ligand docking
by rohi » Fri, 2021-05-28 08:43
1
131 by rmoretti
Fri, 2021-05-28 08:54
Normal topic Meaning of Metalbinding_constraint
by Corvin » Wed, 2021-05-19 07:54
0
176 by Corvin
Wed, 2021-05-19 07:54
Normal topic Rosetta Double changing mmCIF chain ID
by Victor Tobiasson » Thu, 2021-05-13 07:57
2
230 by Victor Tobiasson
Thu, 2021-05-13 08:33
Normal topic Rotate chain
by Germanico » Sun, 2021-05-09 16:36
3
272 by danpf
Mon, 2021-05-10 10:04
Normal topic Calibur not listing cluster members
by Swillard » Sun, 2018-07-01 13:07
2
1,074 by benhardy
Fri, 2021-05-07 07:22
Normal topic Using NCAA
by ate » Sat, 2021-05-01 02:52
0
219 by ate
Sat, 2021-05-01 02:52
Normal topic Using NCAA
by ate » Sat, 2021-05-01 02:22
0
220 by ate
Sat, 2021-05-01 02:22
Normal topic Speeding up FastDesign
by ebetica0 » Wed, 2021-04-28 13:08
1
201 by vmulligan
Wed, 2021-04-28 14:20
Normal topic Clustering problem
by Suuo » Tue, 2021-04-20 01:40
1
215 by rmoretti
Tue, 2021-04-20 13:06
Normal topic opencl support programs
by x_wuxi » Mon, 2021-04-12 18:17
1
213 by rmoretti
Tue, 2021-04-13 06:42
Normal topic ab initio structure modeling
by pci112 » Mon, 2021-04-12 08:07
0
197 by pci112
Mon, 2021-04-12 08:12
Normal topic Sequence Profile/Checkpoint file
by ojmel » Fri, 2021-04-02 17:29
1
264 by taylorjones
Mon, 2021-04-05 13:17
Normal topic Ligand being read as part of protein structure
by MarkusAurelius » Thu, 2021-04-01 11:00
2
250 by MarkusAurelius
Fri, 2021-04-02 11:44
Normal topic params file for beta-amino acids
by phonez » Mon, 2021-03-29 18:30
4
384 by everyday847
Thu, 2021-04-01 11:59
Normal topic clean_pdb.py
by duz » Wed, 2021-03-24 13:36
2
274 by duz
Thu, 2021-04-01 09:34
Normal topic Show I be using beta_nov16 scorefxn?
by matteoferla » Thu, 2021-04-01 04:06
0
139 by matteoferla
Thu, 2021-04-01 04:06
Normal topic de novo RNA loop
by c.ocasion » Sun, 2021-02-14 18:34
5
565 by everyday847
Mon, 2021-03-29 20:19
Normal topic Chain name being read as residue
by MarkusAurelius » Mon, 2021-03-22 11:19
2
230 by MarkusAurelius
Mon, 2021-03-29 09:06
Normal topic de novo protein prediction
by pci112 » Tue, 2021-03-23 10:13
2
273 by pci112
Thu, 2021-03-25 01:44
Normal topic MPI optimization on TACC stampede2 HPC
by rlwoltz » Tue, 2021-03-16 18:07
2
268 by rlwoltz
Wed, 2021-03-24 22:36
Normal topic I Need Help on Validation for a Ligand Docking Experiment.
by tbelec » Sat, 2021-03-20 13:27
1
229 by matteoferla
Mon, 2021-03-22 08:29
Normal topic Suppress printing to STDOUT for applications
by tylerborrman » Tue, 2015-11-24 11:37
5
3,159 by code_Monkey
Thu, 2021-03-18 08:03
Normal topic small molecule charge generated by molfile_to_params.py
by rohi » Wed, 2021-03-17 09:35
3
241 by rmoretti
Wed, 2021-03-17 13:52
Normal topic Rosetta and design of ligand binding site
by rohi » Mon, 2021-03-15 06:00
0
162 by rohi
Mon, 2021-03-15 06:31
Normal topic Recommendations for CoupledMoves enzyme redesign
by dgm3 » Thu, 2021-03-04 10:53
1
321 by aloshbau
Tue, 2021-03-09 02:47
Normal topic Ab Initio Modelling of Protein with Small-Molecule Cofactor
by jurkm » Thu, 2011-03-10 06:56
14
10,996 by jseco
Mon, 2021-03-08 03:46
Normal topic C-term amidation
by tttt » Tue, 2021-03-02 07:46
2
306 by tttt
Wed, 2021-03-03 09:22
Normal topic Running RosettaScripts, but got an error "src/utility/options/OptionCollection.cc, line 1153, No values of the appropriate type"
by zhoubin » Sun, 2021-02-28 08:51
3
311 by zhoubin
Mon, 2021-03-01 22:11
Normal topic How to export high energy state pdb out of backrub?
by whiteqiu » Mon, 2021-03-01 18:32
0
175 by whiteqiu
Mon, 2021-03-01 18:32
Normal topic ERROR: Not complementary at positions
by szcshr123 » Fri, 2021-02-26 05:58
2
320 by szcshr123
Fri, 2021-02-26 14:41
Normal topic Remodel and the depracated EMPTY NC
by matteoferla » Fri, 2021-02-26 07:12
0
166 by matteoferla
Fri, 2021-02-26 07:12
Normal topic Fragment Picker score type weights
by wellsm10 » Mon, 2020-12-14 13:05
1
398 by dgront
Thu, 2021-02-11 08:30
Normal topic multi state protein design
by rohi » Fri, 2020-09-04 08:14
2
642 by rmoretti
Tue, 2021-02-09 13:45
Normal topic running Rosetta with MPI
by rohi » Sat, 2020-09-05 16:06
1
568 by rmoretti
Tue, 2021-02-09 13:44
Normal topic Help with filtering (Rosetta scripts)
by wentlewi » Sat, 2020-10-24 10:12
1
404 by rmoretti
Tue, 2021-02-09 12:35
Normal topic protein design for increasing its affinity towards ligand
by rohi » Fri, 2020-10-30 11:33
1
375 by rmoretti
Tue, 2021-02-09 12:25
Normal topic error running "helix_preassemble_setup.py"
by zahra_AZ » Tue, 2020-11-03 01:54
1
449 by rmoretti
Tue, 2021-02-09 12:19
Normal topic clustering ligand binding mood by ligand RMSD
by rohi » Tue, 2021-01-26 21:11
1
293 by brownbp1
Tue, 2021-02-09 12:12
Normal topic constraint are not imposed during protein-ligand docking
by rohi » Wed, 2020-12-02 11:28
1
369 by rmoretti
Tue, 2021-02-09 12:02
Normal topic Rotamer Library Generation in Rosetta3
by jcminerlanl » Wed, 2016-11-30 07:34
5
3,162 by rmoretti
Tue, 2021-02-09 11:52
Normal topic enzyme design implementation
by rohi » Wed, 2020-12-16 09:54
1
408 by rmoretti
Tue, 2021-02-09 11:30
Normal topic dealing with Large ligand in Ligand docking and enzyme design
by rohi » Mon, 2021-01-04 09:58
1
288 by rmoretti
Tue, 2021-02-09 10:48
Normal topic ddG of multiple mutations on a monomer
by hltorresvera » Mon, 2021-02-01 16:54
0
239 by hltorresvera
Tue, 2021-02-09 10:44
Normal topic Help - Protein-Protein interface design
by Dinesh Kumar » Thu, 2021-01-28 00:47
1
249 by rmoretti
Tue, 2021-02-09 10:29
Normal topic computing Pnear for Rosetta ligand docking
by rohi » Mon, 2021-02-01 08:27
1
285 by rmoretti
Tue, 2021-02-09 09:37
Normal topic Problem with protein and ligand preparation before ligand docking.
by zg148119@ohio.edu » Fri, 2021-02-05 06:47
3
413 by rmoretti
Tue, 2021-02-09 09:22
Normal topic Segfault with docking protocol
by almeida85 » Mon, 2021-02-08 06:39
2
269 by almeida85
Mon, 2021-02-08 09:50
Normal topic Can I compare binding affinity of different ligands using Rosetta?
by zg148119@ohio.edu » Sun, 2020-12-06 11:30
4
940 by nannemdp
Fri, 2021-02-05 06:49
Normal topic There is a problem executing “rosetta_scripts.static.linuxgccrelease ”
by zjya » Tue, 2021-02-02 23:44
1
222 by rmoretti
Wed, 2021-02-03 14:45
Normal topic problem plotting results from docking_analyser with provided Rscript
by madammolecular » Mon, 2021-02-01 14:44
0
166 by madammolecular
Mon, 2021-02-01 22:41
Normal topic rna_denovo secstruct_general function
by rvandamme » Mon, 2021-02-01 13:39
0
193 by rvandamme
Mon, 2021-02-01 13:39
Normal topic Issues with angle Constraints during Docking
by LeonhardJS » Thu, 2021-01-28 04:40
2
354 by LeonhardJS
Fri, 2021-01-29 01:12
Normal topic contribution of interface residues in binding energy
by rohi » Wed, 2021-01-20 07:33
1
265 by rmoretti
Wed, 2021-01-20 07:39
Normal topic De novo backbone trace from fragments
by Victor Tobiasson » Tue, 2020-12-22 06:34
2
521 by Victor Tobiasson
Tue, 2020-12-22 09:18
Normal topic error in ligand docking
by rohi » Fri, 2020-11-13 10:52
1
522 by rmoretti
Fri, 2020-11-13 12:58
Normal topic Error on rna_denovo_setup.py
by zahra_AZ » Mon, 2020-11-09 02:23
0
368 by zahra_AZ
Mon, 2020-11-09 02:23
Normal topic Chain specific flags
by helenah » Mon, 2020-10-19 03:31
5
985 by rmoretti
Fri, 2020-11-06 08:04
Normal topic Problems with Cterm_amidation.txt
by helenah » Thu, 2020-10-08 04:52
8
1,384 by helenah
Tue, 2020-11-03 04:33
Normal topic Comparatively modelled chains are far apart in final structure while the template pdb has all chains in a close-knit complex
by Sunidhi » Sun, 2020-11-01 11:00
0
291 by Sunidhi
Sun, 2020-11-01 11:01
Normal topic location of define_interface.py
by rohi » Mon, 2020-10-26 19:42
1
416 by rmoretti
Mon, 2020-10-26 19:52
Normal topic Extracting PDBs from a Silent file: "Can't find residue type for ARG"
by avsrivatsa » Sat, 2020-10-17 16:20
2
502 by avsrivatsa
Mon, 2020-10-19 18:16
Normal topic using full atom constraint in docking
by rohi » Thu, 2020-10-15 10:28
0
324 by rohi
Thu, 2020-10-15 10:28
Normal topic Score function: unable to open input_files/1qys.pdb
by Cyrrusm » Tue, 2020-10-13 11:35
1
429 by rmoretti
Tue, 2020-10-13 11:40
Normal topic analyzing the protein protein docking without native structure
by rohi » Sun, 2020-10-11 20:42
2
544 by rohi
Tue, 2020-10-13 09:15
Normal topic loop modelling on complex structure
by Tianyang89 » Fri, 2020-09-18 07:24
1
498 by amelie.stein
Mon, 2020-09-28 10:41
Normal topic I used mpirun/mpiexec and it runs same job 32times
by leygkn » Mon, 2020-09-21 00:53
6
1,143 by jadolfbr
Thu, 2020-09-24 10:04
Normal topic RosettaRemodel gives no increased output when setting higher -num_trajectory
by JW_24 » Tue, 2020-09-22 11:49
2
555 by JW_24
Wed, 2020-09-23 01:27
Normal topic Error with simple_cycpep_predict protocol while using a native pdb file
by Florent Langenfeld » Tue, 2019-03-26 10:05
3
1,065 by Florent Langenfeld
Tue, 2020-09-22 03:03
Normal topic CryoEM model refinement with covalent conjugated prosthetic Phosphopantetheine carrying acyl group
by ZhijunW » Thu, 2020-09-03 18:36
11
1,911 by matteoferla
Sat, 2020-09-12 03:02
Normal topic 4mer 6mer fragment database
by bjharris » Wed, 2020-09-09 15:12
2
642 by bjharris
Wed, 2020-09-09 20:04
Normal topic RosettaCM: help to generate similar models as those from Robetta Server
by haom » Wed, 2020-09-09 09:19
0
356 by haom
Wed, 2020-09-09 09:19
Normal topic what factors determine the lowest (best) LigInterfaceEnergy score?
by jmaly » Wed, 2020-08-26 13:07
0
411 by jmaly
Wed, 2020-09-02 16:16
Normal topic How RosettaCM can perform part of C terminal domain (CTD) structure prediction without proper template structures (coordinates)
by haom » Tue, 2020-09-01 13:21
0
347 by haom
Tue, 2020-09-01 18:50
Normal topic RosettaCM: adding constraints while keeping AUTO constraints
by Michele.Bonus » Sun, 2020-08-30 10:42
2
625 by Michele.Bonus
Sun, 2020-08-30 23:06
Normal topic Error: Element 'RandomizeBBByRamaPrePro': This element is not expected.
by nferruz » Fri, 2020-08-28 06:04
0
393 by nferruz
Fri, 2020-08-28 06:05
Normal topic Compile C++ Rosetta to Pyrosetta ERROR
by michelleqyh » Fri, 2020-08-21 09:00
0
318 by michelleqyh
Fri, 2020-08-21 09:00
Normal topic DockingProtocol mover ensemble error
by dfcoelho » Tue, 2018-10-16 08:32
2
1,273 by brspurri
Thu, 2020-08-20 13:22
Normal topic selecting pivot_residue in Backrub for ensemble generation
by rohi » Fri, 2020-08-07 15:41
6
1,324 by matteoferla
Tue, 2020-08-11 10:00
Normal topic Controlling Input in the Tutorial
by Smbat » Wed, 2020-07-29 22:41
2
617 by Smbat
Thu, 2020-07-30 03:07
Normal topic type of docking
by rohi » Mon, 2020-07-06 06:55
11
2,527 by rohi
Sun, 2020-07-26 17:03
Normal topic Gaussian Constraint For Dihedrals
by jinli711 » Thu, 2020-07-23 10:47
1
516 by matteoferla
Fri, 2020-07-24 03:06
Normal topic Quick mysql output question
by pedro.guillem » Thu, 2020-07-23 03:45
0
315 by pedro.guillem
Thu, 2020-07-23 03:45
Normal topic I made a params file generation webpage
by matteoferla » Wed, 2020-07-22 03:08
0
328 by matteoferla
Wed, 2020-07-22 03:08
Normal topic This element is not expected.
by ac.research » Fri, 2017-10-13 03:47
6
3,743 by vmulligan
Thu, 2020-07-16 23:31
Normal topic "Rosetta predictions of density, heat of vaporization (∆Hvap) and heat capacity (Cp(l))"
by matteoferla » Tue, 2020-07-14 01:51
0
350 by matteoferla
Tue, 2020-07-14 01:51
Normal topic Make fragments
by jeanramos » Mon, 2020-07-13 00:56
0
348 by jeanramos
Mon, 2020-07-13 00:56
Normal topic where is PyIgClassfiy.py ?
by mxp » Tue, 2020-07-07 23:57
2
618 by mxp
Wed, 2020-07-08 23:25
Normal topic Questions about alanine scanning in Rosetta
by LTJ » Mon, 2020-07-06 14:13
0
351 by LTJ
Mon, 2020-07-06 14:13
Normal topic simple_cycpep_predict issue modifying terminal residue
by JEaston » Thu, 2020-06-25 13:15
1
509 by vmulligan
Mon, 2020-06-29 13:09

Pages

New posts
No new posts
Hot topic with new posts
Hot topic without new posts
Sticky topic
Locked topic
Subscribe to RSS - Rosetta 3 - General