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Rosetta 3 - General

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:16
0
4,851 by admin
Fri, 2015-09-04 16:17
Normal topic Is it better to have smaller nstruct but many runs?
by Loki01 » Mon, 2018-11-19 11:50
3
25 by smlewis
Mon, 2018-11-19 13:20
Normal topic InterfaceAnalyzer packstat score = 0.000
by vmc99 » Fri, 2018-11-16 11:30
4
34 by vmc99
Mon, 2018-11-19 11:42
Normal topic Denovo density didn't output a structure
by ahmadkhalifa » Mon, 2018-02-12 08:10
3
325 by ylwang
Wed, 2018-11-14 03:03
Normal topic How to minimize only a few key residues' orientation
by Ronghai Cheng » Mon, 2018-11-05 18:37
2
51 by Ronghai Cheng
Tue, 2018-11-13 21:56
Normal topic Rosetta lack of necessary application
by ylwang » Wed, 2018-11-07 01:13
2
58 by ylwang
Tue, 2018-11-13 00:41
Normal topic Rosetta CM - Ignore Sporadic Errors
by Swillard » Wed, 2018-06-13 05:47
6
307 by rmoretti
Mon, 2018-11-12 14:29
Normal topic Ab Initio large threshold for clustering
by Swillard » Mon, 2018-11-12 14:14
0
16 by Swillard
Mon, 2018-11-12 14:15
Normal topic Rosetta-based projects using and licensing
by SergeyP » Fri, 2018-10-26 15:45
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104 by SergeyP
Mon, 2018-11-12 09:19
Normal topic Incorporating Rosetta Binary and Database to a Web Server Pipeline
by smkim » Fri, 2018-09-28 20:35
1
162 by rmoretti
Fri, 2018-11-09 12:22
Normal topic Rosetta script to relax a neighborhood only
by matteoferla » Mon, 2018-10-29 03:34
1
44 by jadolfbr
Fri, 2018-11-09 09:17
Normal topic Iterative local rebuilding vs automated structure refinement
by ahmadkhalifa » Fri, 2018-09-14 07:44
3
150 by ahmadkhalifa
Tue, 2018-11-06 08:57
Normal topic Consistent XYZvector length() zero failure in EnzDes
by mwfranklin » Thu, 2018-11-01 12:44
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34 by mwfranklin
Thu, 2018-11-01 12:44
Normal topic crashed when loading RDC data
by yangshen12 » Fri, 2018-10-26 12:34
0
58 by yangshen12
Fri, 2018-10-26 12:34
Normal topic DockingProtocol mover ensemble error
by dfcoelho » Tue, 2018-10-16 08:32
1
65 by dfcoelho
Tue, 2018-10-16 08:35
Normal topic Error in enzyme_design.default.linuxgccrelease: corrupted size vs. prev_size
by dasdevashishdas » Fri, 2018-10-12 00:55
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69 by dasdevashishdas
Fri, 2018-10-12 00:55
Normal topic env energy term
by bazzoli » Wed, 2018-10-10 01:59
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62 by bazzoli
Wed, 2018-10-10 01:59
Normal topic Params file for Methane
by dasdevashishdas » Sun, 2018-10-07 21:34
1
52 by rmoretti
Mon, 2018-10-08 11:20
Normal topic Peripheral membrane protein modeling
by Fukiishi » Tue, 2018-10-02 02:09
3
86 by matteoferla
Thu, 2018-10-04 01:30
Normal topic Constraints use in RosettaCM
by a.book » Wed, 2018-10-03 12:11
0
64 by a.book
Wed, 2018-10-03 15:56
Normal topic How to define the surface (???.surf) for surface_docking?
by Anpu » Thu, 2018-09-27 07:34
0
61 by Anpu
Thu, 2018-09-27 23:36
Normal topic Is CST_Design required for enzdes protocol?
by dasdevashishdas » Mon, 2018-09-03 00:51
2
150 by dasdevashishdas
Thu, 2018-09-27 03:35
Normal topic Fluctuations in I_sc
by eminegenetics » Thu, 2018-09-13 12:07
4
126 by eminegenetics
Fri, 2018-09-21 07:42
Normal topic lysine-aspartate isopeptide bond
by matteoferla » Tue, 2016-11-01 10:54
11
2,595 by matteoferla
Tue, 2018-09-18 15:36
Normal topic known disulfides in Remodel sequence
by matteoferla » Mon, 2018-09-10 06:43
1
85 by matteoferla
Thu, 2018-09-13 06:21
Normal topic Docking tree issues
by salvatta » Tue, 2018-07-17 05:57
5
225 by salvatta
Mon, 2018-09-10 10:04
Normal topic incomparable ddG values
by ela » Fri, 2018-08-31 02:53
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88 by ela
Fri, 2018-08-31 02:53
Normal topic RosettaCM density guided rebuilding methodology
by ahmadkhalifa » Thu, 2018-08-30 06:45
4
153 by ahmadkhalifa
Thu, 2018-08-30 23:09
Normal topic Reading chloride anions
by Martin Floor » Mon, 2018-08-27 14:29
2
113 by Martin Floor
Tue, 2018-08-28 13:21
Normal topic Rosetta CM incorrect threading
by ahmadkhalifa » Mon, 2018-08-06 11:09
6
239 by rmoretti
Fri, 2018-08-24 11:59
Normal topic Do Rosetta support hydroxide(OH-) and oxide(O2-) params?
by dasdevashishdas » Thu, 2018-08-16 21:15
2
167 by dasdevashishdas
Thu, 2018-08-23 18:02
Normal topic recommended function type for cross links data
by meravb » Sun, 2018-08-05 06:57
2
133 by rmoretti
Mon, 2018-08-20 11:51
Normal topic Atomic refinement with fixed ligand
by ahmadkhalifa » Tue, 2018-07-24 10:41
6
269 by rmoretti
Mon, 2018-08-20 11:45
Normal topic ddG = dGmutant ‐ dGwildtype
by ela » Thu, 2018-07-26 09:17
3
243 by ela
Thu, 2018-08-09 08:04
Normal topic ab initio struction prediction
by Negarsardar » Mon, 2018-08-06 15:50
1
109 by smlewis
Tue, 2018-08-07 16:59
Normal topic Undocumented changes in BackrubDD
by abhi_pe_acharya » Mon, 2018-07-16 00:24
2
175 by abhi_pe_acharya
Sun, 2018-08-05 22:03
Normal topic De novo density assembly weights don't add up to a 100
by ahmadkhalifa » Fri, 2018-08-03 12:07
1
95 by rmoretti
Fri, 2018-08-03 12:37
Normal topic rosettaScore.py has a typo, I think. Can I fix it in my own copy?
by mdeklotz » Thu, 2018-08-02 15:15
4
178 by rmoretti
Fri, 2018-08-03 11:39
Normal topic Rosetta structure refinement alters bound ligand
by ahmadkhalifa » Mon, 2018-07-23 07:49
1
130 by rmoretti
Fri, 2018-08-03 08:59
Normal topic Propagating the same mutation over "different" chains
by mdeklotz » Thu, 2018-07-26 09:27
3
145 by rmoretti
Fri, 2018-08-03 08:42
Normal topic Question about FlexPepDock score
by aelatico » Thu, 2018-07-19 20:39
1
111 by rmoretti
Wed, 2018-08-01 16:04
Normal topic How did you begin to learn Rosetta?
by mdeklotz » Mon, 2018-07-30 10:08
1
123 by jkleman
Tue, 2018-07-31 13:19
Normal topic Why I_sc of Rosetta 2016.02 and 2018.21 are so different?
by eminegenetics » Mon, 2018-07-16 12:51
2
190 by eminegenetics
Wed, 2018-07-18 13:48
Normal topic which make_fragments.pl
by renedominik » Mon, 2018-06-04 08:58
2
217 by renedominik
Sat, 2018-07-07 03:03
Normal topic Efficient implementation of MPI with protein design programs
by zachdebruine » Thu, 2018-06-28 10:41
5
270 by smlewis
Tue, 2018-07-03 11:22
Normal topic Calibur not listing cluster members
by Swillard » Sun, 2018-07-01 13:07
0
125 by Swillard
Sun, 2018-07-01 13:07
Normal topic Free FSC score for validating refinement
by ahmadkhalifa » Thu, 2018-05-10 05:53
2
200 by ahmadkhalifa
Fri, 2018-06-29 07:54
Normal topic Total Rama Score
by jcminerlanl » Thu, 2018-05-10 07:19
1
178 by rmoretti
Thu, 2018-06-28 14:28
Normal topic Docking a ligand to two movable domains of a protein
by brspurri » Wed, 2018-05-16 08:27
1
165 by rmoretti
Thu, 2018-06-28 14:22
Normal topic Rosetta CM round_thread.pdb doesn't exist and can't find pose (id = round)
by ahmadkhalifa » Wed, 2018-05-23 09:51
2
332 by rmoretti
Thu, 2018-06-28 14:09
Normal topic Questions regarding fragmentation using Robetta
by ahmadkhalifa » Thu, 2018-06-28 13:24
1
92 by smlewis
Thu, 2018-06-28 13:34
Normal topic Amino acid post-translational modifications
by aelatico » Tue, 2018-06-19 03:29
1
134 by smlewis
Tue, 2018-06-19 10:31
Normal topic ERROR: Unused "free" argument specified: GDP.fa.tors
by ahmadkhalifa » Fri, 2018-06-15 11:27
10
416 by smlewis
Tue, 2018-06-19 09:28
Normal topic Cannot use SimpleMetrics
by Vedasheersh » Sun, 2018-06-10 23:38
5
280 by smlewis
Tue, 2018-06-12 10:54
Normal topic Fragments for short peptides using Robetta
by renedominik » Wed, 2018-05-16 14:21
3
308 by renedominik
Mon, 2018-06-04 00:04
Normal topic "caught exception" for PDB with membrane "DUM" residues
by nitroamos » Wed, 2018-05-30 08:35
1
213 by smlewis
Wed, 2018-05-30 11:15
Normal topic solution of the length of peptide candidates is larger than substrate with FlexPepDock and Flexpepbind
by ziqi1234 » Thu, 2018-05-24 02:18
0
148 by ziqi1234
Thu, 2018-05-24 02:18
Normal topic Problems with "pdb_renumber.py" in tutorial Advanced Protein-Protein Docking
by Sunyp_IM » Sun, 2017-06-25 02:40
9
1,427 by ac.research
Mon, 2018-05-14 10:20
Normal topic RosettaDesign improvements
by ac.research » Mon, 2018-05-14 08:27
0
129 by ac.research
Mon, 2018-05-14 08:27
Normal topic Mutate multidomain protein
by frankfurter1 » Wed, 2018-05-09 04:40
0
129 by frankfurter1
Wed, 2018-05-09 04:40
Normal topic Denovo density excess map input and segmentation
by ahmadkhalifa » Mon, 2018-04-30 07:28
0
123 by ahmadkhalifa
Fri, 2018-05-04 07:50
Normal topic restrict PackRotamersMover
by pmit » Thu, 2018-05-03 01:48
0
124 by pmit
Thu, 2018-05-03 01:48
Normal topic Question about CartesianMD
by orionshih » Sun, 2018-04-29 21:07
2
191 by orionshih
Tue, 2018-05-01 21:16
Normal topic Structure refinement guided by Cryo-EM density maps
by ahmadkhalifa » Thu, 2018-03-08 08:22
7
758 by ahmadkhalifa
Tue, 2018-05-01 09:04
Normal topic Issue with Loop Analyzer Mover ouput
by abhi_pe_acharya » Mon, 2018-04-30 09:55
2
186 by abhi_pe_acharya
Mon, 2018-04-30 22:54
Normal topic Denovo density corrupted silent file
by ahmadkhalifa » Mon, 2018-04-23 07:30
4
298 by ahmadkhalifa
Thu, 2018-04-26 09:11
Normal topic The concept of unsatisfied hydrogen bond
by asbelx » Wed, 2018-04-25 01:32
2
240 by asbelx
Thu, 2018-04-26 00:23
Normal topic Encouraging better packing in enzyme_design
by linucks » Thu, 2018-03-01 07:05
5
673 by linucks
Wed, 2018-04-25 08:50
Normal topic Molfile to Params File Issue
by jferrie » Mon, 2018-04-23 15:25
0
147 by jferrie
Mon, 2018-04-23 15:25
Normal topic Error running GenericMonteCarlo mover within MultipleOutputWrapper mover
by abhi_pe_acharya » Mon, 2018-04-16 04:58
1
205 by abhi_pe_acharya
Thu, 2018-04-19 03:49
Normal topic Refinement of a PDB structure containing multiple models
by ahmadkhalifa » Wed, 2018-04-18 07:44
3
251 by smlewis
Wed, 2018-04-18 19:03
Normal topic FARFAR and RNA_Tools: problem executing the command helix_preassemble_setup.py
by obdulia » Wed, 2018-04-18 00:45
0
121 by obdulia
Wed, 2018-04-18 00:45
Normal topic Segmentation fault (core dumped) denovo_density.linuxgccrelease
by ahmadkhalifa » Sun, 2018-04-15 17:52
1
200 by smlewis
Mon, 2018-04-16 16:32
Normal topic Modeling transmembrane and intracellular domain
by Sunyp_IM » Sun, 2018-04-08 06:44
1
201 by jkleman
Sat, 2018-04-14 10:55
Normal topic segmentation fault when using design_hpatch scoring function
by rbjacob » Mon, 2018-04-09 11:05
5
338 by smlewis
Wed, 2018-04-11 11:45
Normal topic Multiprocessing and running jobs on server using slurm
by ahmadkhalifa » Mon, 2018-04-09 10:59
1
474 by rmoretti
Tue, 2018-04-10 16:00
Normal topic Abinitio isolated
by ac.research » Wed, 2018-04-04 07:36
3
253 by smlewis
Wed, 2018-04-04 10:42
Normal topic build local user guide
by coomteng@gmail.com » Wed, 2018-03-28 13:55
3
265 by coomteng@gmail.com
Wed, 2018-03-28 14:58
Normal topic Secondary Structure Relax
by ac.research » Sat, 2018-03-17 10:50
5
474 by smlewis
Wed, 2018-03-21 08:42
Normal topic Running a ReportFSC mover between two .mrc maps
by ahmadkhalifa » Mon, 2018-03-12 07:52
9
683 by brandon.frenz
Tue, 2018-03-20 10:28
Normal topic Calling a Rosetta xml script in a Python script gives fail to validate error
by ahmadkhalifa » Tue, 2018-03-06 08:00
3
314 by rmoretti
Mon, 2018-03-19 12:35
Normal topic hbnet
by mintseris » Mon, 2018-03-19 09:02
1
180 by rmoretti
Mon, 2018-03-19 09:08
Normal topic The algorithm of adding missing Hydrogen to a backbone
by ac.research » Tue, 2018-03-06 03:48
1
211 by rmoretti
Sat, 2018-03-17 10:43
Normal topic Rosetta matching error
by purvi24 » Mon, 2018-03-12 02:38
1
209 by smlewis
Mon, 2018-03-12 09:57
Normal topic ERROR: Assertion Fdensity.u2 and Fdensity.u3 failed
by ahmadkhalifa » Wed, 2017-12-06 07:38
13
1,121 by brandon.frenz
Thu, 2018-03-08 09:28
Normal topic demos/public/ideal_proteins Segmentation fault
by coomteng@gmail.com » Wed, 2018-03-07 00:15
5
437 by rmoretti
Thu, 2018-03-08 07:46
Normal topic Rosetta relax application for generating ensemble of structures.
by abhi_pe_acharya » Mon, 2018-02-26 09:08
3
364 by ssrb
Tue, 2018-03-06 14:15
Normal topic RestrictToRepackingRLT and PreventRepackingRLT
by coomteng@gmail.com » Mon, 2018-03-05 11:19
2
240 by coomteng@gmail.com
Tue, 2018-03-06 02:31
Normal topic Molecular oxygen
by matteoferla » Sat, 2018-02-24 06:05
3
380 by matteoferla
Mon, 2018-02-26 02:05
Normal topic Unrecognised resiudues when rescoring PDB files generated by enzyme_design under MPI
by linucks » Tue, 2018-02-13 03:41
4
442 by linucks
Fri, 2018-02-23 08:08
Normal topic How to specify a specific rotamer
by Lior_UCSF » Wed, 2018-02-21 20:35
1
200 by rmoretti
Thu, 2018-02-22 09:29
Normal topic log files
by shadrinams » Fri, 2018-01-26 07:29
7
781 by shadrinams
Mon, 2018-02-12 11:47
Normal topic Icouldnot find DDMI protocol for design protein
by ladimafakher » Mon, 2018-02-12 09:22
1
176 by rmoretti
Mon, 2018-02-12 09:39
Normal topic Repeating sequence in Rosetta de novo protein folding
by orionshih » Wed, 2018-02-07 20:52
2
270 by sheehajh
Thu, 2018-02-08 21:18
Normal topic Calculate ddG in mutation scan of a homodimer
by zachdebruine » Thu, 2018-02-01 10:02
1
259 by rmoretti
Mon, 2018-02-05 15:44
Normal topic Using NCAAs in protocols with native heme proteins
by htorres » Wed, 2018-01-24 08:32
2
339 by htorres
Mon, 2018-02-05 06:53
Normal topic ERROR: FragmentIO: could not open file
by ahmadkhalifa » Wed, 2018-01-31 13:30
1
207 by rmoretti
Wed, 2018-01-31 14:57
Normal topic Structure refinement with RDC constraint
by shushunur » Thu, 2018-01-18 00:44
1
438 by rmoretti
Tue, 2018-01-30 09:08
Normal topic [dev] quickest way to determine bond distance between polymeric-bonded residues in Pose/Conformation
by ipetrik_ambry » Thu, 2018-01-18 12:26
1
276 by rmoretti
Tue, 2018-01-30 08:29
Normal topic changing the chain id
by aneamtu » Tue, 2018-01-09 00:08
2
455 by aneamtu
Thu, 2018-01-18 00:56

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