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Rosetta 3 - General

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:16
0
5,323 by admin
Fri, 2015-09-04 16:17
Normal topic type of docking
by rohi » Mon, 2020-07-06 06:55
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35 by rohi
Thu, 2020-07-09 14:00
Normal topic where is PyIgClassfiy.py ?
by mxp » Tue, 2020-07-07 23:57
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19 by mxp
Wed, 2020-07-08 23:25
Normal topic Questions about alanine scanning in Rosetta
by LTJ » Mon, 2020-07-06 14:13
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16 by LTJ
Mon, 2020-07-06 14:13
Normal topic simple_cycpep_predict issue modifying terminal residue
by JEaston » Thu, 2020-06-25 13:15
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59 by vmulligan
Mon, 2020-06-29 13:09
Normal topic Unrecognized atom parameter with denovo_density
by kalabharath » Mon, 2020-06-29 06:59
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40 by kalabharath
Mon, 2020-06-29 06:59
Normal topic str::out_of_range with mpiexec and relax
by pedro.guillem » Fri, 2020-06-19 10:39
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79 by pedro.guillem
Wed, 2020-06-24 04:49
Normal topic BUG REPORT: MySql column protocol.protocol_id must have the AUTO_INCREMENT flag set
by pedro.guillem » Wed, 2020-05-13 18:31
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83 by pedro.guillem
Wed, 2020-06-24 04:42
Normal topic Setting output values using a database (with relax app)
by pedro.guillem » Thu, 2020-05-14 04:33
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116 by pedro.guillem
Wed, 2020-06-24 04:41
Normal topic Finding affinity-reducing mutants towards a ligand in Ligand-based interface design protocol
by adityapadhi » Wed, 2020-06-24 01:29
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58 by adityapadhi
Wed, 2020-06-24 01:29
Normal topic patch file modification for ser_phosphorylated.txt
by hajar » Sun, 2020-06-21 00:49
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65 by matteoferla
Tue, 2020-06-23 10:58
Normal topic How to create a native file for Protein-Protein docking
by Kotimedidhi » Mon, 2020-06-22 08:10
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47 by Kotimedidhi
Mon, 2020-06-22 08:10
Normal topic Ligand docking: how to generate the crystal_complex.pdb with hydrogens added
by nhinguyen26 » Wed, 2020-06-17 15:03
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57 by matteoferla
Sat, 2020-06-20 03:56
Normal topic error when using script best_ifaceE.py
by windmill » Thu, 2020-06-18 21:30
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51 by windmill
Thu, 2020-06-18 21:32
Normal topic Structure refinement for helical assembles using Rosetta
by xiaoyanzi » Thu, 2020-06-18 00:34
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46 by xiaoyanzi
Thu, 2020-06-18 00:36
Normal topic Clustering error - Help, please
by karolcia1010 » Wed, 2020-06-17 11:19
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36 by karolcia1010
Wed, 2020-06-17 11:19
Normal topic reading of AtomPair failed in relax with constraint
by hajar » Wed, 2020-06-10 10:02
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50 by hajar
Wed, 2020-06-10 11:17
Normal topic Difference between interface_delta_X and dG_separated?
by Nicole Deng » Sat, 2020-06-06 06:31
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83 by Nicole Deng
Sat, 2020-06-06 06:40
Normal topic Method for WebServer Fragment Generation
by Jacob_Verburgt » Tue, 2020-06-02 07:29
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85 by Jacob_Verburgt
Tue, 2020-06-02 10:26
Normal topic Protein Interface Design using PSSM
by ccruz » Sun, 2020-05-24 14:27
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124 by nannemdp
Tue, 2020-05-26 06:33
Normal topic Error in molfile_to_params_polymer.py for NCAA
by kkuo33 » Mon, 2020-05-18 16:41
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112 by matteoferla
Sat, 2020-05-23 03:09
Normal topic Side-chain grafting in fixed scaffold
by Kazu » Wed, 2020-05-20 08:45
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92 by Kazu
Wed, 2020-05-20 11:58
Normal topic Errors in Interface design  
by Kazu » Thu, 2019-10-31 17:48
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378 by Kazu
Mon, 2020-05-18 10:52
Normal topic Calibur not listing cluster members
by Swillard » Sun, 2018-07-01 13:07
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469 by LWilliamson
Sun, 2020-05-17 15:36
Normal topic Error in flex ddG tutorial
by wentlewi » Sat, 2020-05-16 08:06
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111 by wentlewi
Sat, 2020-05-16 08:06
Normal topic How to specify constraints during fold-and-dock?
by sarah_b » Tue, 2020-05-12 01:55
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146 by matteoferla
Thu, 2020-05-14 07:01
Normal topic Output "per-residue" energy score to database
by pedro.guillem » Thu, 2020-05-14 04:22
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93 by pedro.guillem
Thu, 2020-05-14 04:22
Normal topic Error with filter in rosseta_scripts
by Osmany Guirola » Mon, 2020-05-11 04:52
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81 by Osmany Guirola
Mon, 2020-05-11 04:52
Normal topic I made a RDKit Chem.Mol to params converter — feedback welcome!
by matteoferla » Sun, 2020-05-03 10:14
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111 by jadolfbr
Sun, 2020-05-03 19:38
Normal topic "caught exception" for PDB with membrane "DUM" residues
by nitroamos » Wed, 2018-05-30 08:35
2
960 by Awagner7
Tue, 2020-04-28 10:51
Normal topic error in mol2 to params conversion for GAliganddocking
by jalan » Wed, 2020-04-22 06:08
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125 by jalan
Thu, 2020-04-23 05:19
Normal topic ligand docking error
by YuFei » Wed, 2020-04-22 17:27
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98 by YuFei
Wed, 2020-04-22 17:27
Normal topic Error when trying to thread target sequence over template pdbs, partial_thread.static.macosclangrelease not working properly
by DGR95 » Wed, 2020-04-15 14:42
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107 by DGR95
Fri, 2020-04-17 11:25
Normal topic use_truncated_termini not working in combination with params files
by georg » Thu, 2020-03-26 13:14
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184 by matteoferla
Tue, 2020-04-14 03:36
Normal topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:18
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392 by jalan
Sun, 2020-04-12 08:01
Normal topic Program frozen at "protocols.jobdist.JobDistributors: (0) Master Node -- Waiting for job request; tag_ = 1"
by Xinhang » Sat, 2020-04-11 14:30
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110 by vmulligan
Sat, 2020-04-11 17:40
Normal topic Correct way to force a specific histidine tautomer
by matteoferla » Fri, 2020-04-10 02:40
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82 by matteoferla
Fri, 2020-04-10 02:40
Normal topic Is there other online server for generate fragment?
by ylwang » Wed, 2020-04-01 01:39
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155 by rmoretti
Wed, 2020-04-01 10:10
Normal topic I got so many atoms in one residue
by ylwang » Tue, 2020-03-24 04:40
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168 by ylwang
Tue, 2020-03-24 19:35
Normal topic SARS-CoV-2: call for compound predictions against protease
by matteoferla » Sun, 2020-03-22 05:29
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176 by matteoferla
Sun, 2020-03-22 05:29
Normal topic I generated a table of images & info of the premade NCAA params in the database
by matteoferla » Sun, 2020-02-16 06:27
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349 by matteoferla
Sat, 2020-03-21 09:14
Normal topic NR Database Download in install_dependencies.pl (for make_fragments.pl) Broken
by Jacob_Verburgt » Tue, 2020-03-10 08:58
6
441 by Jacob_Verburgt
Wed, 2020-03-11 05:18
Normal topic Rosetta changing Atom Name in PDB ATOM record?
by chrisHKL » Tue, 2020-03-03 20:50
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152 by smlewis
Wed, 2020-03-04 07:40
Normal topic Are 100 structures the maximum generated when using homology_with_end_extension (broker protocol)?
by thaisarns » Fri, 2020-02-21 05:46
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175 by sheehajh
Fri, 2020-02-21 12:41
Normal topic Does it make sense to perform Docking on a complex?
by chrisHKL » Mon, 2020-02-17 09:12
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133 by chrisHKL
Mon, 2020-02-17 09:12
Normal topic Job Distribution Error
by ac.research » Mon, 2020-02-10 08:22
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245 by ac.research
Fri, 2020-02-14 23:33
Normal topic Error in src/protocols/membrane/util.cc line: 1224
by renedominik » Tue, 2020-02-11 08:10
1
211 by renedominik
Wed, 2020-02-12 06:16
Normal topic DesignByCavityProximity: element not expected
by karenjgonzalez » Tue, 2020-01-28 05:16
4
362 by karenjgonzalez
Tue, 2020-02-11 08:44
Normal topic Rosetta job distribution error
by ss » Thu, 2019-08-01 09:26
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914 by ac.research
Mon, 2020-02-10 08:19
Normal topic MotifGraft error: "Residue connection id changed when creating a new residue at seqpos"
by dfcoelho » Mon, 2020-02-03 11:09
1
181 by dfcoelho
Tue, 2020-02-04 07:45
Normal topic What is the best way to make a residue-specific SASA constraint?
by jmaly » Thu, 2020-01-23 16:40
2
277 by matteoferla
Wed, 2020-01-29 12:18
Normal topic Working through tutorials: expected output scorces differ from calculated results
by j.schmue » Sat, 2020-01-18 13:16
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220 by j.schmue
Tue, 2020-01-28 13:31
Normal topic Rosetta Resfile header
by G Mustafa » Mon, 2020-01-20 06:45
2
262 by G Mustafa
Tue, 2020-01-21 06:04
Normal topic mpi + mp_mutate_relax
by decrSTL » Thu, 2020-01-16 10:47
1
192 by jkleman
Thu, 2020-01-16 11:05
Normal topic Error in enzyme_design.default.linuxgccrelease: corrupted size vs. prev_size
by dasdevashishdas » Fri, 2018-10-12 00:55
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537 by jyy
Mon, 2020-01-13 17:19
Normal topic What is the best protocol to predict the missing residues in X-ray crystallisation?
by lanselibai » Sun, 2019-12-29 04:44
1
236 by matteoferla
Wed, 2020-01-01 04:30
Normal topic Seasons greetings with a Christmas tree shaped protein
by matteoferla » Sun, 2019-12-22 03:37
4
506 by matteoferla
Mon, 2019-12-23 07:24
Normal topic Rosetta Antibody: Unable to open file and terminates
by denatured » Thu, 2019-12-12 11:26
1
385 by denatured
Fri, 2019-12-13 11:19
Normal topic Performace Benchmarking
by Tushar Kush » Wed, 2019-12-04 02:50
2
314 by smlewis
Wed, 2019-12-04 13:07
Normal topic Does Rosetta have a class diagram for each class in the source code?
by ylwang » Thu, 2019-11-21 04:24
3
365 by ylwang
Sat, 2019-11-23 06:26
Normal topic Docking Metalloprotein-Protein
by fgomes » Fri, 2019-11-22 19:12
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189 by fgomes
Fri, 2019-11-22 19:12
Normal topic Ddg calculation for a metalloprotein using APBS
by dfcoelho » Tue, 2019-11-19 10:06
2
268 by dfcoelho
Wed, 2019-11-20 05:39
Normal topic Is cis-Glycine okay?
by matteoferla » Tue, 2019-11-19 07:26
5
455 by matteoferla
Wed, 2019-11-20 02:32
Normal topic protein surface design
by tatsiana.bylund » Sun, 2019-09-15 03:44
2
340 by dfcoelho
Tue, 2019-11-19 10:16
Normal topic AbInitioRelax.mpi Hangs - Waiting for Job Request
by nleroy » Thu, 2019-10-31 07:30
2
425 by nleroy
Fri, 2019-11-08 12:44
Normal topic Can I thread a two chained structure in RosettaCM?
by ahmadkhalifa » Mon, 2018-01-08 09:41
3
1,089 by aaxx
Wed, 2019-11-06 01:44
Normal topic Error in Hybridize of Rosetta Comparative Modeling.
by Ivan » Fri, 2019-11-01 07:46
1
266 by rmoretti
Mon, 2019-11-04 12:54
Normal topic De novo density assembly weights don't add up to a 100
by ahmadkhalifa » Fri, 2018-08-03 12:07
3
624 by rmoretti
Tue, 2019-10-22 07:05
Normal topic Does Rosetta have a separate refinement function?
by ylwang » Tue, 2019-09-24 19:08
2
514 by ylwang
Tue, 2019-10-08 18:34
Normal topic Ab initio structure prediction for long amino acid sequence
by maruhuang » Fri, 2019-08-02 03:38
4
515 by maruhuang
Thu, 2019-09-26 18:55
Normal topic how to perform model quality assessment of rosetta generated models?
by Danielsebas » Tue, 2019-09-24 05:03
0
254 by Danielsebas
Tue, 2019-09-24 05:03
Normal topic How to get fragment library from robetta server for mre than 1000 residue sequence?
by Danielsebas » Wed, 2019-09-18 07:53
1
295 by rmoretti
Wed, 2019-09-18 10:49
Normal topic Ligand question - aromatic bonds not being enforced?
by Rick_Baker » Wed, 2019-09-11 09:08
1
281 by Rick_Baker
Wed, 2019-09-11 15:35
Normal topic lysine-aspartate isopeptide bond
by matteoferla » Tue, 2016-11-01 10:54
13
5,118 by ablakely7
Wed, 2019-09-11 15:33
Normal topic AbinitioRelax of RCSB PDB structures
by ac.research » Tue, 2019-09-03 02:35
1
290 by danpf
Tue, 2019-09-03 10:39
Normal topic Fixing certain residues during refinement
by ckdenist » Thu, 2019-08-29 14:00
1
297 by jadolfbr
Thu, 2019-08-29 14:29
Normal topic problem parsing a THR residue
by decrSTL » Wed, 2019-08-21 12:25
4
554 by decrSTL
Tue, 2019-08-27 10:24
Closed topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:20
1
339 by rmoretti
Mon, 2019-08-26 15:01
Normal topic MakeRotLib
by yinasun » Sun, 2019-07-28 20:08
1
315 by rmoretti
Mon, 2019-08-26 15:00
Normal topic Unable to create col_complex.pdb file
by sayan500 » Tue, 2019-07-30 22:08
1
310 by rmoretti
Mon, 2019-08-26 14:52
Normal topic Design with non-canonical amino acids (NCAA)
by yinasun » Mon, 2019-08-05 00:34
2
445 by matteoferla
Thu, 2019-08-22 05:39
Normal topic Flag to not use PDB ligands
by matteoferla » Wed, 2019-08-21 10:14
2
404 by matteoferla
Wed, 2019-08-21 11:58
Normal topic Where to find old version of Rosetta with git version number
by mao_x » Wed, 2019-08-07 01:22
2
460 by mao_x
Thu, 2019-08-08 01:37
Normal topic RosettaDesign
by ac.research » Sun, 2019-07-21 01:20
2
1,113 by ac.research
Sat, 2019-08-03 08:12
Normal topic Disulfidize mover
by karenjgonzalez » Wed, 2019-07-31 12:35
0
273 by karenjgonzalez
Wed, 2019-07-31 12:35
Normal topic Error in Loop Modeling
by sayan500 » Tue, 2019-07-30 22:20
0
373 by sayan500
Tue, 2019-07-30 22:20
Normal topic rosetta run error
by isengupta13 » Thu, 2010-06-03 19:00
2
1,397 by aminzia
Fri, 2019-07-26 13:14
Normal topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:17
0
233 by yinasun
Fri, 2019-07-26 02:17
Normal topic This element is not expected.
by ac.research » Fri, 2017-10-13 03:47
5
2,176 by BioPython
Fri, 2019-07-12 03:15
Normal topic How to determine the value size in block of *.cst files?
by weifulei » Sun, 2019-05-05 19:56
1
301 by rmoretti
Tue, 2019-07-09 15:59
Normal topic The question about FavorNativeResidue
by asbelx » Fri, 2019-04-12 20:02
1
425 by rmoretti
Tue, 2019-07-09 15:57
Normal topic How to determine the value size in block of *.cst files?
by weifulei » Sun, 2019-05-05 19:56
1
360 by rmoretti
Tue, 2019-07-09 15:48
Normal topic how to design binding interface?
by Lindsay » Mon, 2013-12-02 19:06
8
6,360 by rmoretti
Tue, 2019-07-09 12:50
Normal topic How to define a theozyme from the .pdb crystal structure without ligand?
by weifulei » Mon, 2019-05-20 21:18
1
436 by rmoretti
Tue, 2019-07-09 12:31
Normal topic ERROR: Unable to open weights/patch file
by peony » Sun, 2013-11-17 02:49
4
4,344 by rmoretti
Tue, 2019-07-09 10:29
Normal topic Rosetta3 Tutorials
by smlewis » Fri, 2011-11-18 07:33
8
12,417 by rmoretti
Tue, 2019-07-09 10:24
Normal topic IS there any source code about protein structure prediction with only sequences information?
by ylwang » Mon, 2019-07-08 02:36
1
319 by rmoretti
Mon, 2019-07-08 08:05
Normal topic Mutations are ignored (fixbb) when using -auto_setup_metals option
by hdelrisco » Wed, 2019-06-19 15:43
1
332 by smlewis
Fri, 2019-06-28 13:56
Normal topic Hydrogen bond detection and shape complementarity
by sujigeorge1979 » Fri, 2019-06-14 02:39
3
637 by sujigeorge1979
Thu, 2019-06-27 01:30
Normal topic InterfaceAnalyzer total score = 0.000
by vmc99 » Wed, 2019-06-12 14:06
3
661 by jadolfbr
Wed, 2019-06-12 20:17

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