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Rosetta 3 - General

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:16
0
4,431 by admin
Fri, 2015-09-04 16:17
Normal topic optimisation of a protein-protein interface
by sdh_h » Thu, 2017-05-04 05:06
1
67 by rmoretti
Mon, 2017-05-15 09:03
Normal topic rosetta compile
by MA » Wed, 2017-04-26 00:46
2
86 by MA
Thu, 2017-04-27 18:53
Normal topic Adding centroid .params files for non-canonical residues based on all-atom .params files
by jcminerlanl » Thu, 2017-04-27 09:28
2
57 by vmulligan
Thu, 2017-04-27 16:41
Normal topic Is there a way to calculate chi1 and chi1+chi differences between two structures?
by sn » Thu, 2017-04-20 21:46
1
78 by rmoretti
Fri, 2017-04-21 07:52
Normal topic Problem with running turtorial of rna denovo
by myle » Fri, 2017-04-14 09:23
3
78 by rmoretti
Tue, 2017-04-18 13:49
Normal topic Library of unnatural amino acid parameters
by saxen » Mon, 2017-04-17 11:08
1
73 by smlewis
Tue, 2017-04-18 08:33
Normal topic Error using InterfaceHoles filter
by SenyorDrew » Fri, 2017-04-14 08:55
2
72 by SenyorDrew
Fri, 2017-04-14 10:12
Normal topic can not find a residue type that matches the residue HIS_P:NtermProteinFull
by tarsis » Wed, 2017-04-05 08:51
1
80 by rmoretti
Fri, 2017-04-14 08:37
Normal topic constraints
by lah435 » Sun, 2017-03-12 03:25
2
110 by lah435
Mon, 2017-04-03 19:50
Normal topic Data Check for a newb
by ac.research » Sun, 2017-03-12 23:42
2
124 by ac.research
Fri, 2017-03-31 07:36
Normal topic Extremely low interface scores with "local refinement"
by eminegenetics » Wed, 2017-03-29 12:24
1
75 by rmoretti
Wed, 2017-03-29 12:37
Normal topic Computing energy gradients for side chain minimization
by pachecoj » Wed, 2017-03-29 08:03
5
158 by pachecoj
Wed, 2017-03-29 12:32
Normal topic Error running snugdock
by SenyorDrew » Tue, 2017-03-14 10:00
5
235 by SenyorDrew
Wed, 2017-03-29 06:40
Normal topic Error while trying to run r_noe_assign
by sn » Mon, 2017-03-13 11:40
1
86 by rmoretti
Tue, 2017-03-28 09:02
Normal topic Using logic in resfile, Rosetta Scripts
by tsztain » Wed, 2017-03-22 13:50
1
84 by smlewis
Wed, 2017-03-22 14:02
Normal topic [dev] not seeing energy in pose row for new energy term in design
by ipetrik_ambry » Fri, 2017-03-03 13:16
1
105 by ipetrik_ambry
Tue, 2017-03-14 14:09
Normal topic scoring with omega energy term
by SergeyP » Thu, 2017-03-09 12:03
2
135 by SergeyP
Fri, 2017-03-10 11:16
Normal topic Rosetta Antibody Prepack - Problem HL_A vs. LH_A
by cannond » Fri, 2017-03-03 02:41
5
287 by cannond
Wed, 2017-03-08 03:00
Normal topic combine_silent ERROR: unknown atom_name: CYS SG
by freedman » Mon, 2017-03-06 10:56
5
189 by freedman
Mon, 2017-03-06 13:24
Normal topic Looking for collaboration.
by ac.research » Mon, 2017-03-06 04:54
1
108 by rmoretti
Mon, 2017-03-06 08:37
Normal topic [dev] Using h-bonding values in new energy term
by ipetrik_ambry » Wed, 2017-03-01 11:33
4
217 by ipetrik_ambry
Thu, 2017-03-02 15:35
Normal topic Typical relax options not applied in relax.mpi.linuxiccrelease??
by David Weis » Mon, 2017-02-27 11:35
3
166 by rmoretti
Wed, 2017-03-01 12:55
Normal topic Antibody Homology Modeling - Antibody vs. Antibody_legacy
by cannond » Tue, 2017-02-14 05:53
4
248 by cannond
Wed, 2017-03-01 08:05
Normal topic Antibody homology modeling fails after blastp
by sunhwan » Sat, 2017-02-18 11:25
7
363 by sunhwan
Mon, 2017-02-27 11:02
Hot topic protein design question
by bo » Fri, 2012-08-24 10:41
32
8,266 by ac.research
Sat, 2017-02-11 07:33
Normal topic Robetta nstruct number
by ac.research » Tue, 2017-01-31 14:27
1
139 by rmoretti
Thu, 2017-02-02 08:52
Normal topic Does the fold count reset if abinitio is restarted?
by burkheadlab » Mon, 2011-06-13 11:39
10
2,261 by rmoretti
Thu, 2017-02-02 08:32
Normal topic ETABLE constraint function type
by allan.ferrari » Tue, 2017-01-10 08:01
8
523 by smlewis
Sun, 2017-01-15 18:14
Normal topic Different weights in the constraints for each stage of AbinitioRelax
by allan.ferrari » Sun, 2017-01-15 04:35
2
193 by smlewis
Sun, 2017-01-15 18:10
Normal topic Error with non-canonical amino acid in SnugDock.
by sk0319 » Thu, 2016-12-29 16:12
8
481 by sk0319
Wed, 2017-01-11 10:52
Normal topic Rotamer Library Generation in Rosetta3
by jcminerlanl » Wed, 2016-11-30 07:34
3
321 by sk0319
Thu, 2017-01-05 17:07
Normal topic distances definition in course-grained (centroid mode) steps
by allan.ferrari » Tue, 2017-01-03 05:15
6
414 by allan.ferrari
Tue, 2017-01-03 11:15
Normal topic relax - P6G molecule
by allan.ferrari » Wed, 2016-11-30 05:01
3
274 by allan.ferrari
Tue, 2017-01-03 05:02
Normal topic Why are all source codes .gz and not .tgz
by jasnyderjr » Tue, 2016-12-20 21:23
12
798 by smlewis
Thu, 2016-12-22 13:11
Normal topic General protein-protein docking when no info. on structure is availble
by jasnyderjr » Fri, 2016-12-09 04:55
3
338 by smlewis
Tue, 2016-12-20 10:40
Normal topic rosetta_scripts_BOGUS coords warning message
by Karol » Tue, 2016-12-13 02:35
5
454 by Karol
Thu, 2016-12-15 01:35
Normal topic dG_separated threshold for identifying non-binding peptides with InterfaceAnalyzer.
by jyotisutar9 » Thu, 2016-12-01 00:39
6
433 by jyotisutar9
Wed, 2016-12-14 09:39
Normal topic Error using FilterScan with rosettascripts
by SenyorDrew » Tue, 2016-12-13 14:29
0
111 by SenyorDrew
Tue, 2016-12-13 14:29
Normal topic Calibur-linux binary or source code availability?
by jasnyderjr » Sat, 2016-12-10 23:36
2
231 by jadolfbr
Sun, 2016-12-11 10:53
Normal topic lysine-aspartate isopeptide bond
by matteoferla » Tue, 2016-11-01 10:54
6
738 by matteoferla
Thu, 2016-11-17 02:02
Normal topic span and frags filefor multichain transmembrane protein
by zhiguang » Wed, 2016-10-26 13:28
4
415 by zhiguang
Tue, 2016-11-15 12:27
Normal topic Partial homology modeling in Rosetta
by al614 » Mon, 2016-10-31 12:30
1
201 by rmoretti
Mon, 2016-11-14 15:12
Normal topic Errors Rosetta symm refine
by ms4392 » Fri, 2016-10-21 13:56
1
212 by rmoretti
Mon, 2016-11-14 14:26
Normal topic DomainAssembly Mover with constraints (using RosettaScripts)
by resiros » Wed, 2016-09-21 11:19
3
442 by rmoretti
Mon, 2016-11-14 14:21
Normal topic Ligand Docking with Orphan GPCR
by marsaa » Thu, 2016-10-13 07:45
1
284 by rmoretti
Fri, 2016-10-14 16:43
Normal topic "abinitio" with mpi
by al614 » Wed, 2016-10-12 12:17
1
275 by rmoretti
Fri, 2016-10-14 15:46
Normal topic Histidine protonation
by DmitriiN » Mon, 2016-09-26 13:15
9
1,392 by rmoretti
Fri, 2016-10-14 14:08
Normal topic How to transform a pose from symmetric into non-symmetric?
by msardejani » Tue, 2016-10-04 16:55
2
304 by msardejani
Wed, 2016-10-05 10:53
Normal topic Rosetta remodel on intel Xeon Phi
by pablogalazdavison » Wed, 2016-09-14 15:35
3
358 by pablogalazdavison
Thu, 2016-09-15 16:36
Normal topic symmetric design without symmetrizing the structure
by sdh_h » Tue, 2016-09-13 05:49
1
243 by rmoretti
Tue, 2016-09-13 07:41
Normal topic restrain multiple portions of proteins with MinMover
by Karol » Wed, 2016-09-07 08:29
4
597 by rmoretti
Thu, 2016-09-08 10:56
Normal topic Negative fa_rep on ddG ?
by LiorZ » Thu, 2016-09-08 07:44
1
233 by rmoretti
Thu, 2016-09-08 07:56
Normal topic dock & design
by sdh_h » Fri, 2016-09-02 03:07
1
267 by rmoretti
Mon, 2016-09-05 09:39
Normal topic Conversion from Dihedral angle representation to Cartesian representation
by rodrigo.faccioli » Sat, 2012-02-25 11:57
3
10,869 by charlie.strauss
Fri, 2016-09-02 10:08
Normal topic Remodel introduces clashes when stitching
by achambe » Thu, 2016-08-25 17:51
1
239 by possu
Tue, 2016-08-30 16:57
Normal topic BridgeChainsMover
by msardejani » Sun, 2016-08-07 17:32
5
666 by smlewis
Tue, 2016-08-30 13:47
Normal topic Cryo-EM: problem with RosettaCM using multiple template models as input
by Karol » Mon, 2016-08-29 05:26
0
210 by Karol
Mon, 2016-08-29 05:27
Normal topic sequence_tolerance is very slow when -ms:num_packs > 1
by coomteng@gmail.com » Thu, 2016-08-25 13:17
3
372 by coomteng@gmail.com
Fri, 2016-08-26 00:01
Normal topic HBNetStapleInterface
by sdh_h » Wed, 2016-08-24 03:30
1
222 by smlewis
Wed, 2016-08-24 07:23
Normal topic Difficulties with Protein Docking using Harmonic Restraints
by Parker.deWaal » Fri, 2016-08-19 11:23
1
254 by smlewis
Mon, 2016-08-22 10:39
Normal topic Question about homology modelling
by DmitriiN » Sun, 2016-08-21 13:44
3
446 by smlewis
Mon, 2016-08-22 10:28
Normal topic Is the packer aware of non canonical amino acids?
by krdav » Tue, 2016-08-16 08:16
7
818 by krdav
Wed, 2016-08-17 12:57
Normal topic "Illegal Instruction" for particular Movers/Filters
by Jhreed » Thu, 2016-08-11 12:59
1
280 by smlewis
Thu, 2016-08-11 13:16
Normal topic Error using pHDock
by SenyorDrew » Thu, 2016-08-11 05:56
0
242 by SenyorDrew
Thu, 2016-08-11 05:56
Normal topic [Mover] is not known to the MoverFactory
by Jhreed » Fri, 2016-08-05 12:23
4
538 by msardejani
Sun, 2016-08-07 17:49
Normal topic reporting IteratedConvergence status
by sdh_h » Thu, 2016-08-04 10:05
2
319 by sdh_h
Thu, 2016-08-04 11:22
Normal topic how build (N-terminal 17 residues) structre /fragment file generation
by venkatazb » Wed, 2016-07-27 23:56
3
457 by smlewis
Fri, 2016-07-29 07:43
Normal topic combine silent.out file
by venkatazb » Fri, 2016-07-22 05:22
1
388 by smlewis
Fri, 2016-07-22 07:31
Normal topic Modeling protonated histidine
by SenyorDrew » Mon, 2016-07-18 07:34
2
444 by SenyorDrew
Mon, 2016-07-18 08:27
Normal topic short peptide fragment file generation
by cheyuk » Mon, 2016-07-11 00:04
4
599 by smlewis
Wed, 2016-07-13 23:41
Normal topic calculate RMSD (RNA modelling)
by obdulia » Tue, 2016-07-05 01:58
5
829 by obdulia
Wed, 2016-07-13 09:11
Normal topic pKa prediction using the Rosetta scoring function
by das » Tue, 2016-06-21 06:42
1
296 by ssrb
Tue, 2016-07-12 10:02
Normal topic TEST - who got this email?
by smlewis » Mon, 2016-05-23 17:24
1
305 by rmoretti
Tue, 2016-07-12 08:48
Normal topic ssDNA (aptamer)/protein docking
by JulienO » Fri, 2016-05-27 02:25
1
339 by rmoretti
Tue, 2016-07-12 08:47
Normal topic Problems with parametrisation
by DmitriiN » Fri, 2016-05-27 04:51
1
319 by rmoretti
Tue, 2016-07-12 08:43
Normal topic No output with docking full protocol
by JulienO » Mon, 2016-05-30 02:08
1
305 by rmoretti
Tue, 2016-07-12 08:40
Normal topic Rosetta: Clustering
by sskim » Sat, 2016-06-11 14:44
1
305 by rmoretti
Tue, 2016-07-12 08:36
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
by gsuchunli » Thu, 2016-06-30 11:06
2
792 by rmoretti
Tue, 2016-07-12 08:18
Normal topic Histidine phosphorylation by a patch
by felipet » Sat, 2016-07-09 06:51
2
447 by felipet
Sat, 2016-07-09 09:50
Normal topic Running CstFileToTheozyme for Mono-Atomic Metal
by Jhreed » Fri, 2016-07-08 13:43
0
212 by Jhreed
Fri, 2016-07-08 13:44
Normal topic Weird results from flexpepdock MPI
by gerdos » Fri, 2016-06-24 01:18
3
468 by smlewis
Thu, 2016-06-30 08:44
Normal topic multiple symmetry definition files
by sdh_h » Wed, 2016-06-29 09:31
1
273 by rmoretti
Wed, 2016-06-29 10:20
Hot topic New parametrization problems
by DmitriiN » Wed, 2016-06-08 05:09
25
3,011 by smlewis
Tue, 2016-06-28 09:05
Normal topic Score Differences between Ab Initio Scoring and Rescore
by mmarlett » Wed, 2016-06-15 09:14
2
376 by mmarlett
Thu, 2016-06-16 07:06
Normal topic Enumeration of Amino Acid identities
by achambe » Wed, 2016-06-15 15:28
1
286 by rmoretti
Wed, 2016-06-15 16:06
Normal topic CDR Cluster Constrained Relax Equivalent
by SenyorDrew » Wed, 2016-04-27 08:04
3
572 by SenyorDrew
Tue, 2016-06-14 06:43
Normal topic Parametrisation problems
by DmitriiN » Tue, 2016-05-31 09:37
2
388 by DmitriiN
Wed, 2016-06-01 15:46
Hot topic modified Serine: FoldTree::reorder( 1 ) failed, new/old edge_list_ size mismatch error
by Karol » Wed, 2016-05-04 08:47
17
2,094 by smlewis
Tue, 2016-05-17 08:06
Normal topic -RBSegmentRelax:cst_wt not present in ca_to_allatom.linuxgccrelease application?
by Karol » Thu, 2016-05-12 06:30
2
405 by Karol
Thu, 2016-05-12 07:58
Normal topic Structure-sequence alignment generation with selected PDB how?
by nzsuzsanna » Tue, 2016-05-10 07:39
0
257 by nzsuzsanna
Tue, 2016-05-10 07:39
Normal topic Submitting job to local cluster
by tusharranjanmoharana » Fri, 2016-04-15 01:38
8
1,669 by rmoretti
Mon, 2016-05-09 09:23
Normal topic backbone-independent density
by SergeyP » Sun, 2016-03-20 04:57
2
415 by SergeyP
Thu, 2016-05-05 02:07
Normal topic Ca-RMSD
by jrcf » Mon, 2016-02-29 16:39
2
571 by jrcf
Tue, 2016-05-03 17:40
Normal topic Comparative modeling Error: potential mismatch between sequence from alignment  and sequence from PDB!
by nzsuzsanna » Wed, 2016-04-27 05:32
4
858 by nzsuzsanna
Fri, 2016-04-29 04:30
Normal topic Generating Protein/NA decoys
by rbeier1 » Mon, 2016-01-11 03:25
1
434 by rmoretti
Thu, 2016-04-28 16:25
Normal topic Comparative Modeling databases?
by nitroamos » Wed, 2011-11-23 14:54
6
1,814 by rmoretti
Thu, 2016-04-28 16:15
Normal topic Error: Some problem with atom_id_mask in defining atom_id_map
by galvaner » Tue, 2016-03-01 13:23
1
352 by rmoretti
Thu, 2016-04-28 15:57
Normal topic RosettaDock decoys recoring with ZRANK
by cheyuk » Fri, 2014-04-11 01:40
5
2,764 by rmoretti
Thu, 2016-04-28 15:53
Normal topic setup_run error with multiple resonance lists
by aep » Fri, 2016-03-18 13:36
1
391 by rmoretti
Thu, 2016-04-28 15:49

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