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Rosetta 3 - General

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:16
0
5,583 by admin
Fri, 2015-09-04 16:17
Normal topic Ab Initio Modelling of Protein with Small-Molecule Cofactor
by jurkm » Thu, 2011-03-10 06:56
14
10,325 by jseco
Mon, 2021-03-08 03:46
Normal topic Recommendations for CoupledMoves enzyme redesign
by dgm3 » Thu, 2021-03-04 10:53
0
47 by dgm3
Thu, 2021-03-04 10:53
Normal topic C-term amidation
by tttt » Tue, 2021-03-02 07:46
2
65 by tttt
Wed, 2021-03-03 09:22
Normal topic Running RosettaScripts, but got an error "src/utility/options/OptionCollection.cc, line 1153, No values of the appropriate type"
by zhoubin » Sun, 2021-02-28 08:51
3
61 by zhoubin
Mon, 2021-03-01 22:11
Normal topic How to export high energy state pdb out of backrub?
by whiteqiu » Mon, 2021-03-01 18:32
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41 by whiteqiu
Mon, 2021-03-01 18:32
Normal topic ERROR: Not complementary at positions
by szcshr123 » Fri, 2021-02-26 05:58
2
90 by szcshr123
Fri, 2021-02-26 14:41
Normal topic Remodel and the depracated EMPTY NC
by matteoferla » Fri, 2021-02-26 07:12
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58 by matteoferla
Fri, 2021-02-26 07:12
Normal topic de novo RNA loop
by c.ocasion » Sun, 2021-02-14 18:34
3
141 by everyday847
Tue, 2021-02-23 21:31
Normal topic Fragment Picker score type weights
by wellsm10 » Mon, 2020-12-14 13:05
1
275 by dgront
Thu, 2021-02-11 08:30
Normal topic multi state protein design
by rohi » Fri, 2020-09-04 08:14
2
457 by rmoretti
Tue, 2021-02-09 13:45
Normal topic running Rosetta with MPI
by rohi » Sat, 2020-09-05 16:06
1
427 by rmoretti
Tue, 2021-02-09 13:44
Normal topic Help with filtering (Rosetta scripts)
by wentlewi » Sat, 2020-10-24 10:12
1
259 by rmoretti
Tue, 2021-02-09 12:35
Normal topic protein design for increasing its affinity towards ligand
by rohi » Fri, 2020-10-30 11:33
1
223 by rmoretti
Tue, 2021-02-09 12:25
Normal topic error running "helix_preassemble_setup.py"
by zahra_AZ » Tue, 2020-11-03 01:54
1
274 by rmoretti
Tue, 2021-02-09 12:19
Normal topic clustering ligand binding mood by ligand RMSD
by rohi » Tue, 2021-01-26 21:11
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121 by brownbp1
Tue, 2021-02-09 12:12
Normal topic constraint are not imposed during protein-ligand docking
by rohi » Wed, 2020-12-02 11:28
1
216 by rmoretti
Tue, 2021-02-09 12:02
Normal topic Rotamer Library Generation in Rosetta3
by jcminerlanl » Wed, 2016-11-30 07:34
5
2,771 by rmoretti
Tue, 2021-02-09 11:52
Normal topic enzyme design implementation
by rohi » Wed, 2020-12-16 09:54
1
243 by rmoretti
Tue, 2021-02-09 11:30
Normal topic dealing with Large ligand in Ligand docking and enzyme design
by rohi » Mon, 2021-01-04 09:58
1
143 by rmoretti
Tue, 2021-02-09 10:48
Normal topic ddG of multiple mutations on a monomer
by hltorresvera » Mon, 2021-02-01 16:54
0
94 by hltorresvera
Tue, 2021-02-09 10:44
Normal topic Help - Protein-Protein interface design
by Dinesh Kumar » Thu, 2021-01-28 00:47
1
96 by rmoretti
Tue, 2021-02-09 10:29
Normal topic computing Pnear for Rosetta ligand docking
by rohi » Mon, 2021-02-01 08:27
1
90 by rmoretti
Tue, 2021-02-09 09:37
Normal topic Problem with protein and ligand preparation before ligand docking.
by zg148119@ohio.edu » Fri, 2021-02-05 06:47
3
116 by rmoretti
Tue, 2021-02-09 09:22
Normal topic Segfault with docking protocol
by almeida85 » Mon, 2021-02-08 06:39
2
79 by almeida85
Mon, 2021-02-08 09:50
Normal topic Can I compare binding affinity of different ligands using Rosetta?
by zg148119@ohio.edu » Sun, 2020-12-06 11:30
4
593 by nannemdp
Fri, 2021-02-05 06:49
Normal topic There is a problem executing “rosetta_scripts.static.linuxgccrelease ”
by zjya » Tue, 2021-02-02 23:44
1
77 by rmoretti
Wed, 2021-02-03 14:45
Normal topic problem plotting results from docking_analyser with provided Rscript
by madammolecular » Mon, 2021-02-01 14:44
0
81 by madammolecular
Mon, 2021-02-01 22:41
Normal topic rna_denovo secstruct_general function
by rvandamme » Mon, 2021-02-01 13:39
0
92 by rvandamme
Mon, 2021-02-01 13:39
Normal topic Issues with angle Constraints during Docking
by LeonhardJS » Thu, 2021-01-28 04:40
2
132 by LeonhardJS
Fri, 2021-01-29 01:12
Normal topic contribution of interface residues in binding energy
by rohi » Wed, 2021-01-20 07:33
1
125 by rmoretti
Wed, 2021-01-20 07:39
Normal topic De novo backbone trace from fragments
by Victor Tobiasson » Tue, 2020-12-22 06:34
2
288 by Victor Tobiasson
Tue, 2020-12-22 09:18
Normal topic error in ligand docking
by rohi » Fri, 2020-11-13 10:52
1
335 by rmoretti
Fri, 2020-11-13 12:58
Normal topic Error on rna_denovo_setup.py
by zahra_AZ » Mon, 2020-11-09 02:23
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254 by zahra_AZ
Mon, 2020-11-09 02:23
Normal topic Chain specific flags
by helenah » Mon, 2020-10-19 03:31
5
650 by rmoretti
Fri, 2020-11-06 08:04
Normal topic Problems with Cterm_amidation.txt
by helenah » Thu, 2020-10-08 04:52
8
854 by helenah
Tue, 2020-11-03 04:33
Normal topic Comparatively modelled chains are far apart in final structure while the template pdb has all chains in a close-knit complex
by Sunidhi » Sun, 2020-11-01 11:00
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185 by Sunidhi
Sun, 2020-11-01 11:01
Normal topic location of define_interface.py
by rohi » Mon, 2020-10-26 19:42
1
277 by rmoretti
Mon, 2020-10-26 19:52
Normal topic Extracting PDBs from a Silent file: "Can't find residue type for ARG"
by avsrivatsa » Sat, 2020-10-17 16:20
2
329 by avsrivatsa
Mon, 2020-10-19 18:16
Normal topic using full atom constraint in docking
by rohi » Thu, 2020-10-15 10:28
0
213 by rohi
Thu, 2020-10-15 10:28
Normal topic Score function: unable to open input_files/1qys.pdb
by Cyrrusm » Tue, 2020-10-13 11:35
1
293 by rmoretti
Tue, 2020-10-13 11:40
Normal topic analyzing the protein protein docking without native structure
by rohi » Sun, 2020-10-11 20:42
2
364 by rohi
Tue, 2020-10-13 09:15
Normal topic loop modelling on complex structure
by Tianyang89 » Fri, 2020-09-18 07:24
1
372 by amelie.stein
Mon, 2020-09-28 10:41
Normal topic I used mpirun/mpiexec and it runs same job 32times
by leygkn » Mon, 2020-09-21 00:53
6
798 by jadolfbr
Thu, 2020-09-24 10:04
Normal topic RosettaRemodel gives no increased output when setting higher -num_trajectory
by JW_24 » Tue, 2020-09-22 11:49
2
381 by JW_24
Wed, 2020-09-23 01:27
Normal topic Error with simple_cycpep_predict protocol while using a native pdb file
by Florent Langenfeld » Tue, 2019-03-26 10:05
3
845 by Florent Langenfeld
Tue, 2020-09-22 03:03
Normal topic CryoEM model refinement with covalent conjugated prosthetic Phosphopantetheine carrying acyl group
by ZhijunW » Thu, 2020-09-03 18:36
11
1,356 by matteoferla
Sat, 2020-09-12 03:02
Normal topic 4mer 6mer fragment database
by bjharris » Wed, 2020-09-09 15:12
2
456 by bjharris
Wed, 2020-09-09 20:04
Normal topic RosettaCM: help to generate similar models as those from Robetta Server
by haom » Wed, 2020-09-09 09:19
0
254 by haom
Wed, 2020-09-09 09:19
Normal topic what factors determine the lowest (best) LigInterfaceEnergy score?
by jmaly » Wed, 2020-08-26 13:07
0
316 by jmaly
Wed, 2020-09-02 16:16
Normal topic How RosettaCM can perform part of C terminal domain (CTD) structure prediction without proper template structures (coordinates)
by haom » Tue, 2020-09-01 13:21
0
259 by haom
Tue, 2020-09-01 18:50
Normal topic RosettaCM: adding constraints while keeping AUTO constraints
by Michele.Bonus » Sun, 2020-08-30 10:42
2
442 by Michele.Bonus
Sun, 2020-08-30 23:06
Normal topic Error: Element 'RandomizeBBByRamaPrePro': This element is not expected.
by nferruz » Fri, 2020-08-28 06:04
0
280 by nferruz
Fri, 2020-08-28 06:05
Normal topic Compile C++ Rosetta to Pyrosetta ERROR
by michelleqyh » Fri, 2020-08-21 09:00
0
231 by michelleqyh
Fri, 2020-08-21 09:00
Normal topic DockingProtocol mover ensemble error
by dfcoelho » Tue, 2018-10-16 08:32
2
1,009 by brspurri
Thu, 2020-08-20 13:22
Normal topic selecting pivot_residue in Backrub for ensemble generation
by rohi » Fri, 2020-08-07 15:41
6
934 by matteoferla
Tue, 2020-08-11 10:00
Normal topic Controlling Input in the Tutorial
by Smbat » Wed, 2020-07-29 22:41
2
436 by Smbat
Thu, 2020-07-30 03:07
Normal topic type of docking
by rohi » Mon, 2020-07-06 06:55
11
1,862 by rohi
Sun, 2020-07-26 17:03
Normal topic Gaussian Constraint For Dihedrals
by jinli711 » Thu, 2020-07-23 10:47
1
351 by matteoferla
Fri, 2020-07-24 03:06
Normal topic Quick mysql output question
by pedro.guillem » Thu, 2020-07-23 03:45
0
228 by pedro.guillem
Thu, 2020-07-23 03:45
Normal topic I made a params file generation webpage
by matteoferla » Wed, 2020-07-22 03:08
0
246 by matteoferla
Wed, 2020-07-22 03:08
Normal topic This element is not expected.
by ac.research » Fri, 2017-10-13 03:47
6
3,273 by vmulligan
Thu, 2020-07-16 23:31
Normal topic "Rosetta predictions of density, heat of vaporization (∆Hvap) and heat capacity (Cp(l))"
by matteoferla » Tue, 2020-07-14 01:51
0
234 by matteoferla
Tue, 2020-07-14 01:51
Normal topic Make fragments
by jeanramos » Mon, 2020-07-13 00:56
0
259 by jeanramos
Mon, 2020-07-13 00:56
Normal topic where is PyIgClassfiy.py ?
by mxp » Tue, 2020-07-07 23:57
2
457 by mxp
Wed, 2020-07-08 23:25
Normal topic Questions about alanine scanning in Rosetta
by LTJ » Mon, 2020-07-06 14:13
0
266 by LTJ
Mon, 2020-07-06 14:13
Normal topic simple_cycpep_predict issue modifying terminal residue
by JEaston » Thu, 2020-06-25 13:15
1
369 by vmulligan
Mon, 2020-06-29 13:09
Normal topic Unrecognized atom parameter with denovo_density
by kalabharath » Mon, 2020-06-29 06:59
0
280 by kalabharath
Mon, 2020-06-29 06:59
Normal topic str::out_of_range with mpiexec and relax
by pedro.guillem » Fri, 2020-06-19 10:39
1
439 by pedro.guillem
Wed, 2020-06-24 04:49
Normal topic BUG REPORT: MySql column protocol.protocol_id must have the AUTO_INCREMENT flag set
by pedro.guillem » Wed, 2020-05-13 18:31
0
288 by pedro.guillem
Wed, 2020-06-24 04:42
Normal topic Setting output values using a database (with relax app)
by pedro.guillem » Thu, 2020-05-14 04:33
1
437 by pedro.guillem
Wed, 2020-06-24 04:41
Normal topic Finding affinity-reducing mutants towards a ligand in Ligand-based interface design protocol
by adityapadhi » Wed, 2020-06-24 01:29
0
275 by adityapadhi
Wed, 2020-06-24 01:29
Normal topic patch file modification for ser_phosphorylated.txt
by hajar » Sun, 2020-06-21 00:49
1
399 by matteoferla
Tue, 2020-06-23 10:58
Normal topic How to create a native file for Protein-Protein docking
by Kotimedidhi » Mon, 2020-06-22 08:10
0
262 by Kotimedidhi
Mon, 2020-06-22 08:10
Normal topic Ligand docking: how to generate the crystal_complex.pdb with hydrogens added
by nhinguyen26 » Wed, 2020-06-17 15:03
1
381 by matteoferla
Sat, 2020-06-20 03:56
Normal topic error when using script best_ifaceE.py
by windmill » Thu, 2020-06-18 21:30
1
342 by windmill
Thu, 2020-06-18 21:32
Normal topic Structure refinement for helical assembles using Rosetta
by xiaoyanzi » Thu, 2020-06-18 00:34
0
280 by xiaoyanzi
Thu, 2020-06-18 00:36
Normal topic Clustering error - Help, please
by karolcia1010 » Wed, 2020-06-17 11:19
0
273 by karolcia1010
Wed, 2020-06-17 11:19
Normal topic reading of AtomPair failed in relax with constraint
by hajar » Wed, 2020-06-10 10:02
0
331 by hajar
Wed, 2020-06-10 11:17
Normal topic Difference between interface_delta_X and dG_separated?
by Nicole Deng » Sat, 2020-06-06 06:31
0
371 by Nicole Deng
Sat, 2020-06-06 06:40
Normal topic Method for WebServer Fragment Generation
by Jacob_Verburgt » Tue, 2020-06-02 07:29
2
565 by Jacob_Verburgt
Tue, 2020-06-02 10:26
Normal topic Protein Interface Design using PSSM
by ccruz » Sun, 2020-05-24 14:27
1
519 by nannemdp
Tue, 2020-05-26 06:33
Normal topic Error in molfile_to_params_polymer.py for NCAA
by kkuo33 » Mon, 2020-05-18 16:41
1
528 by matteoferla
Sat, 2020-05-23 03:09
Normal topic Side-chain grafting in fixed scaffold
by Kazu » Wed, 2020-05-20 08:45
0
318 by Kazu
Wed, 2020-05-20 11:58
Normal topic Errors in Interface design  
by Kazu » Thu, 2019-10-31 17:48
4
1,048 by Kazu
Mon, 2020-05-18 10:52
Normal topic Calibur not listing cluster members
by Swillard » Sun, 2018-07-01 13:07
1
785 by LWilliamson
Sun, 2020-05-17 15:36
Normal topic Error in flex ddG tutorial
by wentlewi » Sat, 2020-05-16 08:06
0
396 by wentlewi
Sat, 2020-05-16 08:06
Normal topic How to specify constraints during fold-and-dock?
by sarah_b » Tue, 2020-05-12 01:55
3
738 by matteoferla
Thu, 2020-05-14 07:01
Normal topic Output "per-residue" energy score to database
by pedro.guillem » Thu, 2020-05-14 04:22
0
286 by pedro.guillem
Thu, 2020-05-14 04:22
Normal topic Error with filter in rosseta_scripts
by Osmany Guirola » Mon, 2020-05-11 04:52
0
301 by Osmany Guirola
Mon, 2020-05-11 04:52
Normal topic I made a RDKit Chem.Mol to params converter — feedback welcome!
by matteoferla » Sun, 2020-05-03 10:14
1
529 by jadolfbr
Sun, 2020-05-03 19:38
Normal topic "caught exception" for PDB with membrane "DUM" residues
by nitroamos » Wed, 2018-05-30 08:35
2
1,646 by Awagner7
Tue, 2020-04-28 10:51
Normal topic error in mol2 to params conversion for GAliganddocking
by jalan » Wed, 2020-04-22 06:08
2
563 by jalan
Thu, 2020-04-23 05:19
Normal topic ligand docking error
by YuFei » Wed, 2020-04-22 17:27
0
312 by YuFei
Wed, 2020-04-22 17:27
Normal topic Error when trying to thread target sequence over template pdbs, partial_thread.static.macosclangrelease not working properly
by DGR95 » Wed, 2020-04-15 14:42
0
355 by DGR95
Fri, 2020-04-17 11:25
Normal topic use_truncated_termini not working in combination with params files
by georg » Thu, 2020-03-26 13:14
1
479 by matteoferla
Tue, 2020-04-14 03:36
Normal topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:18
2
853 by jalan
Sun, 2020-04-12 08:01
Normal topic Program frozen at "protocols.jobdist.JobDistributors: (0) Master Node -- Waiting for job request; tag_ = 1"
by Xinhang » Sat, 2020-04-11 14:30
1
469 by vmulligan
Sat, 2020-04-11 17:40
Normal topic Correct way to force a specific histidine tautomer
by matteoferla » Fri, 2020-04-10 02:40
0
325 by matteoferla
Fri, 2020-04-10 02:40
Normal topic Is there other online server for generate fragment?
by ylwang » Wed, 2020-04-01 01:39
1
489 by rmoretti
Wed, 2020-04-01 10:10

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