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FARFAR2 Error With Secondary Structure File

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FARFAR2 Error With Secondary Structure File

Any help with the following error? Thank you


[FILE]: src/core/pose/rna/
[LINE]: 139
[ ERROR ] UtilityExitException
ERROR: Number of right brackets does not match left brackets



Post Situation: 
Thu, 2023-11-02 09:01

What's your secondary structure file's contents? The error message is telling you that the number of left brackets does not match the number of right brackets, which is definitionally a problem (there is no such thing as a base paired residue that's not base paired to anything). You should confirm that your secondary structure file is correctly formatted.

Thu, 2023-11-02 12:09

thank you for responding I figured out what the erroer was. I accidentially had the the following example for the secondary structure file:


incorrect formatting




correct formatting




Sun, 2023-11-05 16:04