Any help with the following error? Thank you
--------------------------------------------------------------------
[FILE]: src/core/pose/rna/RNA_SecStruct.cc
[LINE]: 139
[START_MESSAGE]
[ ERROR ] UtilityExitException
ERROR: Number of right brackets does not match left brackets
[END_MESSAGE]
[END_CRASH_REPORT]
Category:
Post Situation:
What's your secondary structure file's contents? The error message is telling you that the number of left brackets does not match the number of right brackets, which is definitionally a problem (there is no such thing as a base paired residue that's not base paired to anything). You should confirm that your secondary structure file is correctly formatted.
thank you for responding I figured out what the erroer was. I accidentially had the the following example for the secondary structure file:
------------------------------------
incorrect formatting
>file_descriptor
...(((((...)))))...
sequence_here
---------------------------
correct formatting
...(((((...)))))...
sequence_here