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Rosetta 3 - General
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extract 10001+ pdbs by viochemist » Thu, 2010-07-29 16:25 |
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1,978 |
by smlewis Mon, 2014-04-21 06:47 |
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Bug in Loop Modeling by dseelig » Thu, 2010-09-23 05:55 |
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2,848 |
by smlewis Mon, 2014-04-21 06:47 |
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Does Rosetta have homology modeling protocol? by SunH » Thu, 2010-11-04 07:36 |
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4,309 |
by smlewis Mon, 2014-04-21 06:47 |
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mode=release compile on a mac-pro , seg faults and bus errors by dnasmith » Thu, 2010-09-09 16:56 |
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2,564 |
by dnasmith Mon, 2014-04-21 06:47 |
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RosettaHoles in 3.1 by enoee » Thu, 2010-10-14 07:12 |
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2,454 |
by smlewis Mon, 2014-04-21 06:47 |
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relax with restraints by jtmacd » Mon, 2010-11-08 09:11 |
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2,899 |
by jtmacd Mon, 2014-04-21 06:47 |
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Can't find the source code of FlexPepDock protocol in Rosetta3.1 by SunH » Thu, 2010-09-16 06:28 |
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2,868 |
by barak Mon, 2014-04-21 06:47 |
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Running Backrub by enoee » Wed, 2010-10-27 07:51 |
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2,275 |
by smlewis Mon, 2014-04-21 06:47 |
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is it possbile to cluster pdb files? by albumns » Wed, 2010-10-06 02:38 |
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5,383 |
by smlewis Mon, 2014-04-21 06:47 |
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What is the different between dun08 and default dunbrack library? by SunH » Mon, 2010-11-08 06:14 |
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2,476 |
by smlewis Mon, 2014-04-21 06:47 |
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AbinitioRelax under different directories without -constant_seed -jran flag by xpzhang » Wed, 2010-09-15 14:56 |
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7,694 |
by rmoretti Mon, 2014-04-21 06:47 |
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error running rosetta3.1 demos by lvtun » Thu, 2010-10-21 20:43 |
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3,151 |
by lvtun Mon, 2014-04-21 06:47 |
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ddG from backrub by jte » Tue, 2010-10-05 14:09 |
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3,380 |
by smlewis Mon, 2014-04-21 06:47 |
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Predict the N-terminal of a protein by aliaselin » Mon, 2010-11-08 03:23 |
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2,636 |
by smlewis Mon, 2014-04-21 06:47 |
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Installing on windows using MinGW by abdullah_ahmed » Wed, 2010-09-15 08:45 |
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2,026 |
by smlewis Mon, 2014-04-21 06:47 |
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Introduction or tutorial about RosettaMatch by kwak » Thu, 2010-10-21 06:37 |
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6,477 |
by kwak Mon, 2014-04-21 06:47 |
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Abinitio Calculations - typical parameters by vamsi » Thu, 2010-11-11 07:06 |
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6,032 |
by smlewis Mon, 2014-04-21 06:47 |
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packing option "explicit_h2o" and "solvate" by SunH » Wed, 2010-11-17 00:03 |
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2,531 |
by smlewis Mon, 2014-04-21 06:47 |
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Binding energy calculation by SunH » Thu, 2010-12-09 19:29 |
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6,028 |
by jadolfbr Mon, 2014-04-21 06:47 |
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how to do cluster after low resolution protein-protein docking? by albumns » Sat, 2010-11-27 01:17 |
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4,507 |
by albumns Mon, 2014-04-21 06:47 |
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general question about protein docking by albumns » Mon, 2010-12-13 23:26 |
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2,494 |
by JeffreyGray Mon, 2014-04-21 06:47 |
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Rosetta groups in Scandinavia by knutjbj » Mon, 2010-11-15 23:50 |
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2,321 |
by smlewis Mon, 2014-04-21 06:47 |
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Read svn acces or acces to developmen version of rosetta by knutjbj » Thu, 2010-12-09 17:06 |
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2,440 |
by smlewis Mon, 2014-04-21 06:47 |
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question about protein docking results by albumns » Thu, 2010-11-25 08:19 |
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2,243 |
by smlewis Mon, 2014-04-21 06:47 |
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Loop modeling with ligand in the receptor by cno » Mon, 2010-12-13 14:07 |
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6,485 |
by smlewis Mon, 2014-04-21 06:47 |
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error message of runing make_fragment by joseph » Fri, 2010-11-12 11:46 |
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1,880 |
by joseph Mon, 2014-04-21 06:47 |
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high resolution protein docking doesn't work by albumns » Thu, 2010-12-02 02:36 |
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14,258 |
by albumns Mon, 2014-04-21 06:47 |
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could restta consider the flexibility of backbone duirng protein docking? by albumns » Wed, 2010-11-24 01:00 |
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2,499 |
by smlewis Mon, 2014-04-21 06:47 |
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RosettaDOM by ndousis » Sun, 2010-12-12 01:08 |
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3,323 |
by ndousis Mon, 2014-04-21 06:47 |
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Entropy calculation by abdullah_ahmed » Wed, 2010-12-01 07:52 |
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2,455 |
by smlewis Mon, 2014-04-21 06:47 |
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Bug in LoopMover_Refine_Backrub.cc ? by SunH » Wed, 2010-12-15 00:08 |
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2,215 |
by smlewis Mon, 2014-04-21 06:47 |
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All possible mutations by abdullah_ahmed » Tue, 2011-01-04 02:11 |
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2,440 |
by smlewis Mon, 2014-04-21 06:47 |
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'-norepack_disulf' flag NOT work in Ligand-protein docking ? by darlintai » Tue, 2011-01-11 22:21 |
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6,320 |
by smlewis Mon, 2014-04-21 06:47 |
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Collecting 3.2 documentation holes by smlewis » Wed, 2011-01-26 10:39 |
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19,425 |
by FrankVerdin86 Mon, 2014-04-21 06:47 |
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RosettaMatch in 3.2 by jtmacd » Mon, 2010-12-20 08:04 |
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5,080 |
by jtmacd Mon, 2014-04-21 06:47 |
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how to cluster loop? by albumns » Wed, 2011-01-05 19:48 |
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6,534 |
by smlewis Mon, 2014-04-21 06:47 |
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Using rosetta 3 to make a fragment library and then use it to model loop of a protein structure by bharat_46010 » Sun, 2011-01-23 05:22 |
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7,561 |
by dgront Mon, 2014-04-21 06:47 |
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ERROR: Unable to open weights. by libai2098 » Thu, 2010-12-30 17:54 |
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2,198 |
by smlewis Mon, 2014-04-21 06:47 |
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Symmetric local protein docking by efratmas » Tue, 2011-01-11 03:00 |
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4,425 |
by smlewis Mon, 2014-04-21 06:47 |
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Docking an iron atom to a peptide by buzb » Wed, 2011-01-26 09:49 |
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14,441 |
by smlewis Mon, 2014-04-21 06:47 |
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why docking results are different? by albumns » Sat, 2010-12-18 23:53 |
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3,530 |
by smlewis Mon, 2014-04-21 06:47 |
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where do new .params files go? by einew » Wed, 2011-01-05 12:09 |
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2,409 |
by smlewis Mon, 2014-04-21 06:47 |
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Is the Fold&Dock protocol availabe in Rosetta3.1 by justin » Mon, 2011-01-17 02:41 |
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2,551 |
by smlewis Mon, 2014-04-21 06:47 |
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I'm a total beginner to Rosetta 3.2 and there are no tutorials for me to follow. Can someone help.? =) by monos_morpheus » Wed, 2011-02-02 08:11 |
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11,262 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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does rosetta good at peptide-protein docking? by albumns » Mon, 2010-12-27 18:51 |
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5,268 |
by smlewis Mon, 2014-04-21 06:47 |
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error about 'std::bad_alloc' during running by zhisheng » Mon, 2011-01-10 09:45 |
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11,404 |
by smlewis Mon, 2014-04-21 06:47 |
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Relax protocoll short pdb of AAA petide by knutjbj » Wed, 2011-01-26 05:01 |
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5,048 |
by smlewis Mon, 2014-04-21 06:47 |
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cluster error by albumns » Thu, 2010-12-16 18:06 |
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4,699 |
by smlewis Mon, 2014-04-21 06:47 |
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first try at relaxing a structure by einew » Wed, 2011-01-05 11:09 |
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6,727 |
by einew Mon, 2014-04-21 06:47 |
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Generating Fragment Libraries for Metal Binding Proteins by buzb » Wed, 2011-01-26 12:43 |
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2,874 |
by kaue Mon, 2014-04-21 06:47 |
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about the option -constraints:cst_fa_file & -constraints:cst_fa_weight by jiongzhang » Sat, 2010-12-25 12:55 |
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3,381 |
by smlewis Mon, 2014-04-21 06:47 |
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why not scoring function in loop model? by albumns » Thu, 2011-01-06 00:13 |
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2,299 |
by smlewis Mon, 2014-04-21 06:47 |
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is the RosettaNMR protocol available in Rosetta 3.x? by murgantia » Wed, 2011-01-26 00:39 |
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2,210 |
by smlewis Mon, 2014-04-21 06:47 |
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I have a .tab file. How do I extract information from it? by monos_morpheus » Tue, 2011-02-08 09:30 |
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5,357 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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Symmetric abrelax modeling by SenyorDrew » Fri, 2011-02-18 10:14 |
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4,514 |
by IAndre Mon, 2014-04-21 06:47 |
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obtaing pdb files by knutjbj » Fri, 2011-02-25 11:05 |
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3,484 |
by scombs Mon, 2014-04-21 06:47 |
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NMR / NOE related tools in 3.2 ? by smg3d » Sun, 2011-02-06 06:11 |
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2,319 |
by smlewis Mon, 2014-04-21 06:47 |
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How to design a stand-alone loop from a binding interface? by guangdianzi3 » Fri, 2011-02-11 21:11 |
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2,224 |
by smlewis Mon, 2014-04-21 06:47 |
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sam.predict-2nd for make_fragments.pl script by sumukh21 » Tue, 2011-02-22 17:40 |
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1,611 |
by sumukh21 Mon, 2014-04-21 06:47 |
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FlexPepDocking.mpi.linuxgccrelease bails out ERROR: total_residue() != 0 ERROR:: Exit from: src/core/pose/Pose.cc line: 1369 by knutjbj » Thu, 2011-02-03 03:24 |
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4,529 |
by knutjbj Mon, 2014-04-21 06:47 |
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idealization error by albumns » Mon, 2011-02-07 01:28 |
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2,187 |
by smlewis Mon, 2014-04-21 06:47 |
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how to relax structure constraining CA in Rosetta3.2? by albumns » Tue, 2011-02-15 06:15 |
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2,719 |
by smlewis Mon, 2014-04-21 06:47 |
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snugdock and rosetta 3.2?? by sudhar » Thu, 2011-02-24 00:36 |
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2,294 |
by smlewis Mon, 2014-04-21 06:47 |
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I got the message "ERROR: Residue names must be unique!". by monos_morpheus » Sun, 2011-02-06 03:55 |
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3,728 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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mpi / jd2 with AbinitioRelax and relax (3.2) by smg3d » Wed, 2011-02-09 10:39 |
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24,956 |
by Gaurav_kumar Mon, 2014-04-21 06:47 |
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Patches for post-translational modifications by ltrabuco » Tue, 2011-02-22 01:00 |
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4,144 |
by ltrabuco Mon, 2014-04-21 06:47 |
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questions about ab init membrane protein by albumns » Mon, 2011-02-07 01:09 |
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5,446 |
by zeynep Mon, 2014-04-21 06:47 |
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ab inito memberane error by albumns » Mon, 2011-02-14 10:58 |
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8,144 |
by albumns Mon, 2014-04-21 06:47 |
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How do I add virtual atom to my cofactor (metal ion) in rosettadock? by monos_morpheus » Sat, 2011-02-05 21:24 |
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3,404 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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Domain Insertion equivalent in Rosetta 3.2 by SenyorDrew » Wed, 2011-02-09 09:47 |
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2,163 |
by smlewis Mon, 2014-04-21 06:47 |
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constrain files tutorial by knutjbj » Fri, 2011-02-18 23:57 |
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2,778 |
by smlewis Mon, 2014-04-21 06:47 |
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ERROR READING PDB FILE by asmi » Sat, 2011-02-26 07:23 |
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8,912 |
by smlewis Mon, 2014-04-21 06:47 |
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Performance improvement in AbinitioRelax and relax 3.2 ??? by smg3d » Sun, 2011-02-06 08:59 |
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2,292 |
by smlewis Mon, 2014-04-21 06:47 |
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is it possible to ab initio only a part of a protein? by albumns » Sun, 2011-02-13 08:10 |
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5,034 |
by albumns Mon, 2014-04-21 06:47 |
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make_fragments by sumukh21 » Wed, 2011-02-23 09:29 |
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3,864 |
by sumukh21 Mon, 2014-04-21 06:47 |
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I got the message "bad format in first line of silent file". How do I resolve this? by monos_morpheus » Thu, 2011-02-03 21:09 |
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2,411 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta3.2 cluster application file-reading error by mdyini » Wed, 2011-03-09 16:59 |
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5,650 |
by smlewis Mon, 2014-04-21 06:47 |
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Structure prediction based on template -> Documentation comparative modeling of protein structures by maxebert » Sun, 2011-03-20 01:15 |
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3,205 |
by rmoretti Mon, 2014-04-21 06:47 |
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Using 2 non-standard residues in one run by einew » Tue, 2011-03-08 21:24 |
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6,680 |
by einew Mon, 2014-04-21 06:47 |
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dock_mcm not found by libai2098 » Mon, 2011-03-14 00:02 |
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2,263 |
by smlewis Mon, 2014-04-21 06:47 |
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help with perturbation docking please by einew » Fri, 2011-03-25 16:16 |
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3,173 |
by einew Mon, 2014-04-21 06:47 |
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trying to create heme.params by einew » Mon, 2011-02-28 13:33 |
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4,474 |
by einew Mon, 2014-04-21 06:47 |
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interpreting score values in silent output file after running abinitiorelax by burkheadlab » Wed, 2011-03-09 15:42 |
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3,594 |
by smlewis Mon, 2014-04-21 06:47 |
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I am a beginner in rosetta software and need help to build params file by nais » Fri, 2011-03-18 13:37 |
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6,969 |
by rmoretti Mon, 2014-04-21 06:47 |
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Docking 2 proteins including ligands by einew » Tue, 2011-03-08 13:33 |
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3,685 |
by einew Mon, 2014-04-21 06:47 |
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rosetta 3.1 recognizes PO4 group in dockinglocalrefine option? by nilkoeg » Thu, 2011-03-10 23:19 |
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5,469 |
by nilkoeg Mon, 2014-04-21 06:47 |
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abintio clustering - funnel plot by vamsi » Fri, 2011-03-25 09:18 |
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2,683 |
by smlewis Mon, 2014-04-21 06:47 |
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Loop Insertion/Extension using rosetta suite by bharat_46010 » Mon, 2011-02-28 04:45 |
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2,145 |
by smlewis Mon, 2014-04-21 06:47 |
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Where is the flag -preserve_input_cb? by mdyini » Wed, 2011-03-09 14:40 |
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2,021 |
by smlewis Mon, 2014-04-21 06:47 |
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ERROR: Illegal value for real option -docking:dock_pert specified: 8 by libai2098 » Tue, 2011-03-15 02:26 |
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2,241 |
by smlewis Mon, 2014-04-21 06:47 |
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How do I add hydrogen atoms to my PDB file? by monos_morpheus » Wed, 2011-03-30 03:30 |
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13,843 |
by rmoretti Mon, 2014-04-21 06:47 |
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cluster error by albumns » Sun, 2011-03-06 03:02 |
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4,544 |
by smlewis Mon, 2014-04-21 06:47 |
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low resolution blind protein-protein docking with a ligand by einew » Sun, 2011-03-20 13:59 |
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5,984 |
by einew Mon, 2014-04-21 06:47 |
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Having trouble producing a .pdb file from a silent output file after running abinitio relax by burkheadlab » Wed, 2011-03-09 12:48 |
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3,091 |
by burkheadlab Mon, 2014-04-21 06:47 |
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Re: Basic python scripts for File Manipulation by bharat_46010 » Mon, 2011-03-14 19:44 |
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3,365 |
by smlewis Mon, 2014-04-21 06:47 |
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Help with get_pdb.py for PDB file cleaning by lzx32 » Mon, 2011-03-28 02:11 |
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9,098 |
by smlewis Mon, 2014-04-21 06:47 |
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first run of abinitio in rosetta 3.2 produces an error right away by burkheadlab » Fri, 2011-03-04 22:50 |
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3,671 |
by smlewis Mon, 2014-04-21 06:47 |
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How to set up options in rosetta by alejandro » Wed, 2011-04-06 02:08 |
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5,108 |
by smlewis Mon, 2014-04-21 06:47 |
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Does Rosetta recognise OXT atom type in PDB.? by monos_morpheus » Mon, 2011-04-11 23:57 |
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5,483 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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How to relax only one domain of a protein and keep the rest of them fixed by tevang » Sun, 2011-04-10 03:16 |
14 |
14,578 |
by smlewis Mon, 2014-04-21 06:47 |
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