Unsolved

Hi,

I just wanted to report what I think is an error in the documentation for versions 3.3 & 3.4.

On the "Using Constraints Files in Rosetta" page, in the function definition for a SPLINE function, the documentation currently says:
"SPLINE: histogram_file_path experimental_value weight bin_size ... If using RosettaEPR knowledge-based potential, replace with EPR_DISTANCE"

According to my reading of the source code (and my experience using it!) there is a field missing in that description. It should read something like:

Hi,
I found that is dfire in rosetta3.4. I am curious that if I want to use this energy, what option should I use when run the rosetta design? Thank you!

I need to do certain symmetric docking to generate its homodimer and homotrimer and I am using Rosetta 3.4 Symmetric docking to achieve it.

I used the following command to generate homodimers :

./bin/SymDock.linuxgccrelease -docking:dock_ppk -symmetry:symmetry_definition ./sym_def_dimer.dat -symmetry:initialize_rigid_
body_dofs -database ../rosetta_database/ -out:nstruct 2 -out:file:fullatom -s S_00000001.pdb

Hi,
I found that there are optimize_weights directory in the protocol directory in the rosetta 3.3 and 3.4. What's the function of this protocol and how to use it? I think this is for weights optimization. If I understand correct In this case, if I have 1 more energy term(suppose this term is totally new), how do I use ”optimize_weights“ to optimize the weights? Thank you very much！